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The map label for this gene is ydeP [H]

Identifier: 19746970

GI number: 19746970

Start: 1812031

End: 1812369

Strand: Reverse

Name: ydeP [H]

Synonym: spyM18_2160

Alternate gene names: 19746970

Gene position: 1812369-1812031 (Counterclockwise)

Preceding gene: 19746973

Following gene: 19746968

Centisome position: 95.64

GC content: 44.25

Gene sequence:

>339_bases
ATGCTGAAAAAAAGACCGGCTTGTCCCGTAGAAACAACCTTATCGGTAATCGGGAATAAATGGAAATTATTAATATTAAG
GGACTTGCTAAAGGGGACCTTGCGTTTTGGGCAGTTGAAGTCCTCAATAGGTTCGGTCAGTCAAAAGGTACTTACTGCCC
AATTAAGGGCTATGGAAGCAGACGGATTGGTTCATCGGGAAGTGTATGCAGAAGTGCCACCTCGGGTGGAGTATTCCTTA
ACAGAAACTGGGTTGAGCTTAGCTCCTGTTATTGAAGCGATGTCGGATTGGGGCCAAACTTACCAAGAAAAACATGCCGA
TTTATTTGAAGAAGGCTAG

Upstream 100 bases:

>100_bases
AAAAAGTAACTCATTTGTCAGCCCTATCTTGTTTCTGTTCTCTCTAATAGTCTATAATGGGTTATAAGTTACAAAAAGAT
ACTAAGAGGAGCTGCTGCCT

Downstream 100 bases:

>100_bases
AGGAAAGAGTTGTCCGAGCATACTGAGACTTAGAGAAGCTGAGAGTTTTTAAAAAATGATATTATCACATTCTTTACAGT
TTGATAAAATTACTTTTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MLKKRPACPVETTLSVIGNKWKLLILRDLLKGTLRFGQLKSSIGSVSQKVLTAQLRAMEADGLVHREVYAEVPPRVEYSL
TETGLSLAPVIEAMSDWGQTYQEKHADLFEEG

Sequences:

>Translated_112_residues
MLKKRPACPVETTLSVIGNKWKLLILRDLLKGTLRFGQLKSSIGSVSQKVLTAQLRAMEADGLVHREVYAEVPPRVEYSL
TETGLSLAPVIEAMSDWGQTYQEKHADLFEEG
>Mature_112_residues
MLKKRPACPVETTLSVIGNKWKLLILRDLLKGTLRFGQLKSSIGSVSQKVLTAQLRAMEADGLVHREVYAEVPPRVEYSL
TETGLSLAPVIEAMSDWGQTYQEKHADLFEEG

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=90, Percent_Identity=43.3333333333333, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12485; Mature: 12485

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKRPACPVETTLSVIGNKWKLLILRDLLKGTLRFGQLKSSIGSVSQKVLTAQLRAMEA
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DGLVHREVYAEVPPRVEYSLTETGLSLAPVIEAMSDWGQTYQEKHADLFEEG
CCHHHHHHHHHCCCCCEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLKKRPACPVETTLSVIGNKWKLLILRDLLKGTLRFGQLKSSIGSVSQKVLTAQLRAMEA
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DGLVHREVYAEVPPRVEYSLTETGLSLAPVIEAMSDWGQTYQEKHADLFEEG
CCHHHHHHHHHCCCCCEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]