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The map label for this gene is ydiC [H]

Identifier: 19746801

GI number: 19746801

Start: 1610615

End: 1611313

Strand: Reverse

Name: ydiC [H]

Synonym: spyM18_1939

Alternate gene names: 19746801

Gene position: 1611313-1610615 (Counterclockwise)

Preceding gene: 19746804

Following gene: 19746800

Centisome position: 85.03

GC content: 39.91

Gene sequence:

>699_bases
ATGAAGACACTTGCATTTGATACCTCAAATAAAACCTTGTCCCTTGCTATACTTGATGATGAGACACTTCTAGCAGATAT
GACCCTTAACATTCAGAAAAATCATAGTGTTAGCCTTATGCCTGCTATTGATTTTTTGATGACTTGTACTGATCTTAAAC
CTCAAGATTTAGAAAGAATAGTGGTTGCAAAAGGCCCTGGATCTTACACAGGTTTACGAGTGGCAGTTGCTACTGCAAAA
ACGTTAGCGTACAGTTTAAATATTGCATTGGTCGGGATTTCCAGTCTATATGCTTTGGCTGCGTCTACTTGTAAACAGTA
TCCAAATACTTTGGTGGTGCCATTGATTGATGCTAGAAGGCAAAATGTGTATGTAGGTTATTATCGGCAAGGAAAATCAG
TGATGCCACAAGCCCATGCTCCACTAGAAGTTATTATAGAACAATTAGTAGAAGAAGGGCAGCTGATTTTTGTTGGGGAG
ACTGCTCCTTTTGCTGAGCAAATTCAAAAGAAACTACCTCAGGCGATACTACTTCCAACCCTGCCTTCTGCTTACGAATG
TGGTCTTTTGGGGCAAAGTTTGGCACCAGAAAATGTAGACGCCTTTGTCCCTCAATATCTCAAGAGAGTGGAAGCTGAAG
AAAACTGGCTCAAAGATAATGAGATAAAAGATGATAGTCACTACGTTAAGCGAATCTAA

Upstream 100 bases:

>100_bases
TTATGGTATAGTCTAAATCAAATTAAGAGTCAGCCTTTTTGTTTATGATTCTTAATTTGTGTTATAATTGATACTAGAAC
TTGCAGTAGAAAGGCATAAA

Downstream 100 bases:

>100_bases
TATGAAAACAGTTGAAGAACAAGCAAAAAATATTTATCAGCTTTTGGAAATGGTTTATGGCACGTCTCCTTGGACTTTAG
AACAAGTATTAATCGATATA

Product: glycoprotein endopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKTLAFDTSNKTLSLAILDDETLLADMTLNIQKNHSVSLMPAIDFLMTCTDLKPQDLERIVVAKGPGSYTGLRVAVATAK
TLAYSLNIALVGISSLYALAASTCKQYPNTLVVPLIDARRQNVYVGYYRQGKSVMPQAHAPLEVIIEQLVEEGQLIFVGE
TAPFAEQIQKKLPQAILLPTLPSAYECGLLGQSLAPENVDAFVPQYLKRVEAEENWLKDNEIKDDSHYVKRI

Sequences:

>Translated_232_residues
MKTLAFDTSNKTLSLAILDDETLLADMTLNIQKNHSVSLMPAIDFLMTCTDLKPQDLERIVVAKGPGSYTGLRVAVATAK
TLAYSLNIALVGISSLYALAASTCKQYPNTLVVPLIDARRQNVYVGYYRQGKSVMPQAHAPLEVIIEQLVEEGQLIFVGE
TAPFAEQIQKKLPQAILLPTLPSAYECGLLGQSLAPENVDAFVPQYLKRVEAEENWLKDNEIKDDSHYVKRI
>Mature_232_residues
MKTLAFDTSNKTLSLAILDDETLLADMTLNIQKNHSVSLMPAIDFLMTCTDLKPQDLERIVVAKGPGSYTGLRVAVATAK
TLAYSLNIALVGISSLYALAASTCKQYPNTLVVPLIDARRQNVYVGYYRQGKSVMPQAHAPLEVIIEQLVEEGQLIFVGE
TAPFAEQIQKKLPQAILLPTLPSAYECGLLGQSLAPENVDAFVPQYLKRVEAEENWLKDNEIKDDSHYVKRI

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=223, Percent_Identity=25.5605381165919, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 25610; Mature: 25610

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLAFDTSNKTLSLAILDDETLLADMTLNIQKNHSVSLMPAIDFLMTCTDLKPQDLERI
CCEEEEECCCCEEEEEEECCCEEEEEEEEEEECCCCEEHHHHHHHHHHHCCCCCCCCCEE
VVAKGPGSYTGLRVAVATAKTLAYSLNIALVGISSLYALAASTCKQYPNTLVVPLIDARR
EEECCCCCCCCEEEEEEHHHHHHEEEEEEEEHHHHHHHHHHHHHHHCCCEEEEEEECCCC
QNVYVGYYRQGKSVMPQAHAPLEVIIEQLVEEGQLIFVGETAPFAEQIQKKLPQAILLPT
CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCEEECCC
LPSAYECGLLGQSLAPENVDAFVPQYLKRVEAEENWLKDNEIKDDSHYVKRI
CCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCC
>Mature Secondary Structure
MKTLAFDTSNKTLSLAILDDETLLADMTLNIQKNHSVSLMPAIDFLMTCTDLKPQDLERI
CCEEEEECCCCEEEEEEECCCEEEEEEEEEEECCCCEEHHHHHHHHHHHCCCCCCCCCEE
VVAKGPGSYTGLRVAVATAKTLAYSLNIALVGISSLYALAASTCKQYPNTLVVPLIDARR
EEECCCCCCCCEEEEEEHHHHHHEEEEEEEEHHHHHHHHHHHHHHHCCCEEEEEEECCCC
QNVYVGYYRQGKSVMPQAHAPLEVIIEQLVEEGQLIFVGETAPFAEQIQKKLPQAILLPT
CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCEEECCC
LPSAYECGLLGQSLAPENVDAFVPQYLKRVEAEENWLKDNEIKDDSHYVKRI
CCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]