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The map label for this gene is ypsC [H]

Identifier: 19746566

GI number: 19746566

Start: 1376998

End: 1378152

Strand: Reverse

Name: ypsC [H]

Synonym: spyM18_1656

Alternate gene names: 19746566

Gene position: 1378152-1376998 (Counterclockwise)

Preceding gene: 19746567

Following gene: 19746565

Centisome position: 72.73

GC content: 39.13

Gene sequence:

>1155_bases
ATGAAAGAAACATTTAGATTAGTCGCAACTGCAGCCGCAGGTTTAGAAGCTGTCGTTGGTAAAGAAGTCAGAGCACTAGG
TTTTGATTGTCAGGTTGAAAATGGGAAAGTTTATTTTGAAGGTGATGTAGAAGCGATTGTTAAAACAAATCTTTGGTTAC
GTGCAGCAGATCGTATCAAAATTATCGTAGGACAATTTCCTGCTAGAACCTTTGAAGAATTATTCCAAGGTGTCTTTGCC
TTGGATTGGGAAAATTATTTACCGCTAGGAGCTAAATTTCCAATCTCAAAAGCCAAATGTGTTAAGTCTAAATTGCATAA
CGAGCCAAGTGTTCAGGCGATTACCAAAAAAGCTGTTGTTAAGAAACTGCAAAAACATTTCCACAGGCCAGAAGGAGTTC
CTCTTCAAGAAGTTGGGTCAACGTTTAACATTGAGGTATCTATTTTAAAAGACCAAGCCACTATTATGATTGACACGACA
GGATCTAGCCTATTTAAACGAGGGTACCGCGTTCAAAAGGGTGGGGCTCCTATTAAAGAAAATATGGCAGCTGCTATTTT
GGCATTATCTAACTGGTTTCCAGATAAACCTCTGGTTGATCCCACCTGTGGATCGGGAACGTTTTGCATCGAGGCAGCCC
TGATTGGGATGAATATTGCTCCAGGATTTAACCGTTCGTTTGCTTTTGAAGAATGGAGCTGGGTAGATAAAGACATGGTG
CAACAAGTTCGTGATGATGCCGAACAAGAAGCTAATTATGAAATCGAATTAGATATTTCTGGCTTTGATATCGATGGCCG
CATGATTGAGATTGCTAAAAGTAATGCTGAAGAAGCTGGTTTATCTGATGTGATTATCTTTAAGCAAATGCGTCTGCAAG
ACTTTCGAACAGACAAGGTTAATGGTGTAGTGATATCAAATCCTCCTTATGGAGAACGGTTGCTTGATGACAAAGCGGTT
GACATCTTGTATAATGAAATGGGACAAACCTTTGCACCATTGAAAACATGGGGCAAATTTATCCTTACAAGTGATGAACT
TTTTGAACTAAAATACGGGCAAAAAGCTGATAAAAAACGTAAACTTTATAACGGCACCCTAAAAGTTGATTTGTACCAAT
TTTATGGGGAAAGGGTAAAGCGACATCTGATATAG

Upstream 100 bases:

>100_bases
TTCCTAGTTATTTCCGGAACAAAACATGGCTTATAGAAAATTGCATAATAGGTTAAGCTAGCACTTGCTAGCTTTTATTT
GATTTAAAAGAAAGAGATAT

Downstream 100 bases:

>100_bases
AGAGGTAGTAAGCGTGTCAGAAGAAAGCAAAGAAGTCGAAGTAACAAAAGAATCGCAAACATTGGGGCTTAATGAAGCCA
AGTCAATGACAATTGGTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MKETFRLVATAAAGLEAVVGKEVRALGFDCQVENGKVYFEGDVEAIVKTNLWLRAADRIKIIVGQFPARTFEELFQGVFA
LDWENYLPLGAKFPISKAKCVKSKLHNEPSVQAITKKAVVKKLQKHFHRPEGVPLQEVGSTFNIEVSILKDQATIMIDTT
GSSLFKRGYRVQKGGAPIKENMAAAILALSNWFPDKPLVDPTCGSGTFCIEAALIGMNIAPGFNRSFAFEEWSWVDKDMV
QQVRDDAEQEANYEIELDISGFDIDGRMIEIAKSNAEEAGLSDVIIFKQMRLQDFRTDKVNGVVISNPPYGERLLDDKAV
DILYNEMGQTFAPLKTWGKFILTSDELFELKYGQKADKKRKLYNGTLKVDLYQFYGERVKRHLI

Sequences:

>Translated_384_residues
MKETFRLVATAAAGLEAVVGKEVRALGFDCQVENGKVYFEGDVEAIVKTNLWLRAADRIKIIVGQFPARTFEELFQGVFA
LDWENYLPLGAKFPISKAKCVKSKLHNEPSVQAITKKAVVKKLQKHFHRPEGVPLQEVGSTFNIEVSILKDQATIMIDTT
GSSLFKRGYRVQKGGAPIKENMAAAILALSNWFPDKPLVDPTCGSGTFCIEAALIGMNIAPGFNRSFAFEEWSWVDKDMV
QQVRDDAEQEANYEIELDISGFDIDGRMIEIAKSNAEEAGLSDVIIFKQMRLQDFRTDKVNGVVISNPPYGERLLDDKAV
DILYNEMGQTFAPLKTWGKFILTSDELFELKYGQKADKKRKLYNGTLKVDLYQFYGERVKRHLI
>Mature_384_residues
MKETFRLVATAAAGLEAVVGKEVRALGFDCQVENGKVYFEGDVEAIVKTNLWLRAADRIKIIVGQFPARTFEELFQGVFA
LDWENYLPLGAKFPISKAKCVKSKLHNEPSVQAITKKAVVKKLQKHFHRPEGVPLQEVGSTFNIEVSILKDQATIMIDTT
GSSLFKRGYRVQKGGAPIKENMAAAILALSNWFPDKPLVDPTCGSGTFCIEAALIGMNIAPGFNRSFAFEEWSWVDKDMV
QQVRDDAEQEANYEIELDISGFDIDGRMIEIAKSNAEEAGLSDVIIFKQMRLQDFRTDKVNGVVISNPPYGERLLDDKAV
DILYNEMGQTFAPLKTWGKFILTSDELFELKYGQKADKKRKLYNGTLKVDLYQFYGERVKRHLI

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=348, Percent_Identity=32.4712643678161, Blast_Score=176, Evalue=3e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43196; Mature: 43196

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKETFRLVATAAAGLEAVVGKEVRALGFDCQVENGKVYFEGDVEAIVKTNLWLRAADRIK
CCCHHHHHHHHHHHHHHHHCCHHHHCCCEEEEECCEEEEECCCEEEEECCEEEEECCEEE
IIVGQFPARTFEELFQGVFALDWENYLPLGAKFPISKAKCVKSKLHNEPSVQAITKKAVV
EEEECCCHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
KKLQKHFHRPEGVPLQEVGSTFNIEVSILKDQATIMIDTTGSSLFKRGYRVQKGGAPIKE
HHHHHHHCCCCCCCHHHCCCEEEEEEEEEECCEEEEEECCCHHHHHCCCEEECCCCCHHH
NMAAAILALSNWFPDKPLVDPTCGSGTFCIEAALIGMNIAPGFNRSFAFEEWSWVDKDMV
HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHCCCCHHHH
QQVRDDAEQEANYEIELDISGFDIDGRMIEIAKSNAEEAGLSDVIIFKQMRLQDFRTDKV
HHHHHHHHHHCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCC
NGVVISNPPYGERLLDDKAVDILYNEMGQTFAPLKTWGKFILTSDELFELKYGQKADKKR
CEEEECCCCCCCHHHCCHHHHHHHHHHCCHHHHHHHCCCEEECCCHHEEECCCCCCHHHH
KLYNGTLKVDLYQFYGERVKRHLI
HHHCCEEEEHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKETFRLVATAAAGLEAVVGKEVRALGFDCQVENGKVYFEGDVEAIVKTNLWLRAADRIK
CCCHHHHHHHHHHHHHHHHCCHHHHCCCEEEEECCEEEEECCCEEEEECCEEEEECCEEE
IIVGQFPARTFEELFQGVFALDWENYLPLGAKFPISKAKCVKSKLHNEPSVQAITKKAVV
EEEECCCHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
KKLQKHFHRPEGVPLQEVGSTFNIEVSILKDQATIMIDTTGSSLFKRGYRVQKGGAPIKE
HHHHHHHCCCCCCCHHHCCCEEEEEEEEEECCEEEEEECCCHHHHHCCCEEECCCCCHHH
NMAAAILALSNWFPDKPLVDPTCGSGTFCIEAALIGMNIAPGFNRSFAFEEWSWVDKDMV
HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHCCCCHHHH
QQVRDDAEQEANYEIELDISGFDIDGRMIEIAKSNAEEAGLSDVIIFKQMRLQDFRTDKV
HHHHHHHHHHCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCC
NGVVISNPPYGERLLDDKAVDILYNEMGQTFAPLKTWGKFILTSDELFELKYGQKADKKR
CEEEECCCCCCCHHHCCHHHHHHHHHHCCHHHHHHHCCCEEECCCHHEEECCCCCCHHHH
KLYNGTLKVDLYQFYGERVKRHLI
HHHCCEEEEHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]