Click here to switch to the map view.

The map label for this gene is araR [H]

Identifier: 19746529

GI number: 19746529

Start: 1332187

End: 1333227

Strand: Reverse

Name: araR [H]

Synonym: spyM18_1609

Alternate gene names: 19746529

Gene position: 1333227-1332187 (Counterclockwise)

Preceding gene: 19746532

Following gene: 19746528

Centisome position: 70.35

GC content: 41.98

Gene sequence:

>1041_bases
ATGACAAAATTATTATACAAAAAGATATATCATTTCATTAAAGAGCAGATAGCATCAGGTCGTTTGCAAATTGGTGACCG
CCTACCTACTGAAAAAGAGTTGTCAGAACAGTTCTCGGTTAGCCGTATCACTTCTAAGCGAGCGCTTGTAGAACTGGAGC
AAGAAGGCTTGATTACGAGAAGTCGTGGGAAAGGAAGCTTCGTAGCTAAAAAGCAAGTGACATCCCCTGAAGCGAATAAG
GATTTATTGTTGATTCTTCCTTTTGCTTCTGATTATGAATTGGGTGATTATGCCAAGGGGATTATGACCTCCATTGCTGA
AACAGGTTACCGTCTCATGGTTCAATTGGCCAGTACGGTAAGGCTAGACACCCTATCAGACTATGCTGGGATTATTTATT
ATCCTGAAGATGTCAATCACAGTATTGATTTCCTGTTTTACTGCGACCATCATCACATTCCGCTAGTCTTGTTGGATAAA
TCTCTGGACCTTTTTCAGTTTCCGGCTGTTGTGGCGGATAATAAAGGCGGTGCCTATCAATTGACTCAGCACTTGATTGA
CCAAGGCTGCGACCAGATTTGGTTTGTGGCAATCGAATCCTTTGGGGAAGTGTCATCGGTCAGAGATCGTTATTTGGGTT
ATTTAGCGGCAATGGCAGAATCGTCTCTAAAATCCCATTATTTTCCTAAGACAGAGACTGAAACAACAGATGCTTATTTG
GAGCGTTTGGTGAAAACCTTATCGGAGACGACAGCCACTAAAAAGGGGCTTGTCGTGGAAAACGATTGGTTGGCTATTCA
GCTGATTCAAAAAATCACACAGGTAGGCTTATCTATTCCTGATCAAGTCGCTATTGTAGGCTTTGATAATAATCAAGCCT
CCCGTTTGTTGAGTCCCAAATTAAGCACAGCAGCTCAAGATTTTTACCAAATGGGGCAAGAAGCAGCTAAAGTCTTGTTG
CAGATTATTCATGAGCCAGACCAAGCAGTGGTGTCTTGCCAGTTACCTGTTCAAGTATTTATCAGAGAAAGTAGTCACTA
A

Upstream 100 bases:

>100_bases
TTCGGTTTCATTATAAATGATAAGTTAAACTTTGTCTATAAGTTTTTGAAAAGGTTTACAACTCTTTTTTGACATGTTAT
ACTGATAACAGGAGTAAAGA

Downstream 100 bases:

>100_bases
AAAAGACGTTACTAGCATGAGTTGGTTAGCTCAGGTAAAGGAGACCAGAAATGACCATTTATCACGCCTTAAAGGATTAT
CAAGAAGTCATGACAAGAGG

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MTKLLYKKIYHFIKEQIASGRLQIGDRLPTEKELSEQFSVSRITSKRALVELEQEGLITRSRGKGSFVAKKQVTSPEANK
DLLLILPFASDYELGDYAKGIMTSIAETGYRLMVQLASTVRLDTLSDYAGIIYYPEDVNHSIDFLFYCDHHHIPLVLLDK
SLDLFQFPAVVADNKGGAYQLTQHLIDQGCDQIWFVAIESFGEVSSVRDRYLGYLAAMAESSLKSHYFPKTETETTDAYL
ERLVKTLSETTATKKGLVVENDWLAIQLIQKITQVGLSIPDQVAIVGFDNNQASRLLSPKLSTAAQDFYQMGQEAAKVLL
QIIHEPDQAVVSCQLPVQVFIRESSH

Sequences:

>Translated_346_residues
MTKLLYKKIYHFIKEQIASGRLQIGDRLPTEKELSEQFSVSRITSKRALVELEQEGLITRSRGKGSFVAKKQVTSPEANK
DLLLILPFASDYELGDYAKGIMTSIAETGYRLMVQLASTVRLDTLSDYAGIIYYPEDVNHSIDFLFYCDHHHIPLVLLDK
SLDLFQFPAVVADNKGGAYQLTQHLIDQGCDQIWFVAIESFGEVSSVRDRYLGYLAAMAESSLKSHYFPKTETETTDAYL
ERLVKTLSETTATKKGLVVENDWLAIQLIQKITQVGLSIPDQVAIVGFDNNQASRLLSPKLSTAAQDFYQMGQEAAKVLL
QIIHEPDQAVVSCQLPVQVFIRESSH
>Mature_345_residues
TKLLYKKIYHFIKEQIASGRLQIGDRLPTEKELSEQFSVSRITSKRALVELEQEGLITRSRGKGSFVAKKQVTSPEANKD
LLLILPFASDYELGDYAKGIMTSIAETGYRLMVQLASTVRLDTLSDYAGIIYYPEDVNHSIDFLFYCDHHHIPLVLLDKS
LDLFQFPAVVADNKGGAYQLTQHLIDQGCDQIWFVAIESFGEVSSVRDRYLGYLAAMAESSLKSHYFPKTETETTDAYLE
RLVKTLSETTATKKGLVVENDWLAIQLIQKITQVGLSIPDQVAIVGFDNNQASRLLSPKLSTAAQDFYQMGQEAAKVLLQ
IIHEPDQAVVSCQLPVQVFIRESSH

Specific function: Transcriptional repressor of the arabinose utilization genes [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789202, Length=149, Percent_Identity=27.5167785234899, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786540, Length=219, Percent_Identity=28.310502283105, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790369, Length=310, Percent_Identity=21.9354838709677, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082252, Length=71, Percent_Identity=40.8450704225352, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR001761
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 38848; Mature: 38717

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLLYKKIYHFIKEQIASGRLQIGDRLPTEKELSEQFSVSRITSKRALVELEQEGLITR
CCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
SRGKGSFVAKKQVTSPEANKDLLLILPFASDYELGDYAKGIMTSIAETGYRLMVQLASTV
CCCCCCEEEHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLDTLSDYAGIIYYPEDVNHSIDFLFYCDHHHIPLVLLDKSLDLFQFPAVVADNKGGAYQ
HHHHHHCCCCEEECCCCCCCCEEEEEEECCCCCEEEEECCCCCHHHCCEEEECCCCCHHH
LTQHLIDQGCDQIWFVAIESFGEVSSVRDRYLGYLAAMAESSLKSHYFPKTETETTDAYL
HHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
ERLVKTLSETTATKKGLVVENDWLAIQLIQKITQVGLSIPDQVAIVGFDNNQASRLLSPK
HHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHCCCH
LSTAAQDFYQMGQEAAKVLLQIIHEPDQAVVSCQLPVQVFIRESSH
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCEEEEEECCCC
>Mature Secondary Structure 
TKLLYKKIYHFIKEQIASGRLQIGDRLPTEKELSEQFSVSRITSKRALVELEQEGLITR
CHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
SRGKGSFVAKKQVTSPEANKDLLLILPFASDYELGDYAKGIMTSIAETGYRLMVQLASTV
CCCCCCEEEHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLDTLSDYAGIIYYPEDVNHSIDFLFYCDHHHIPLVLLDKSLDLFQFPAVVADNKGGAYQ
HHHHHHCCCCEEECCCCCCCCEEEEEEECCCCCEEEEECCCCCHHHCCEEEECCCCCHHH
LTQHLIDQGCDQIWFVAIESFGEVSSVRDRYLGYLAAMAESSLKSHYFPKTETETTDAYL
HHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
ERLVKTLSETTATKKGLVVENDWLAIQLIQKITQVGLSIPDQVAIVGFDNNQASRLLSPK
HHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHCCCH
LSTAAQDFYQMGQEAAKVLLQIIHEPDQAVVSCQLPVQVFIRESSH
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA