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The map label for this gene is ylmH [H]

Identifier: 19746466

GI number: 19746466

Start: 1264874

End: 1265668

Strand: Reverse

Name: ylmH [H]

Synonym: spyM18_1533

Alternate gene names: 19746466

Gene position: 1265668-1264874 (Counterclockwise)

Preceding gene: 19746467

Following gene: 19746465

Centisome position: 66.79

GC content: 31.57

Gene sequence:

>795_bases
ATGGTTAGTCATAGTAAGATTTATCAGCATTTTCACCAAGAAGAATATCCTTTTATTGATAGAATGTCTGATATGATTAA
TAGAGTTGGAGATTACTATCTTTTAGAAGTTACTGAGTTTTTAAATCCTAGAGAAGTGATGATTTTAAAAAGTTTGATTG
CTTTAACAGATCTAAAAATGTTCGTATCAACAGATTACTACCCAAGCGAATATGGTCGTGTCATTATTGCACCTGGTTAC
TATGACTTAGAACAAAGTGATTTTCAAATAGCTTTAGTAGAGATAAGTTATCAGGCAAAGTTTAATCAGTTGACACATAG
TCAAATTTTAGGAACTTTAATTAATGAATTAGGAGTAAAGCGAAATTTATTTGGAGATGTTTTTGTTGAAATGGGATATG
CCCAGCTCATGATTAAGCGGGAGTTATTGGATTATTTTTTAGGAACAATTACTAAAATAGCTAAAACTAGTGTGAAATTA
AGAGAAGTTAACTTTGATCAGTTAATTAGGTCTATTGATAACAGCCAGACCCTGGATATTCTAGTTTCTAGTTTTCGATT
AGATGGTGTAGTTGCTACTATCTTAAAAAAATCTCGAACGCAAGTTATAGCATTAATTGAAGCAAATAAGATTAAGGTAA
ACTATCGACTCGCTAATAAAGCTTCAGATAATCTAGTCATAGGGGGGGATATGGTGAGTATCAGAGGTCACGGACGTTTT
ACTCTTTTAGCAGATAATGGAGTGACCAAACATGGCAAACAAAAAATAACACTAAGTAAAATGATACATAAATAA

Upstream 100 bases:

>100_bases
GAGCATTTAATTTACAATTTGCCGGTCTTGACTTCACTATTTTTGTCGTCATTATTAGTTTGAATTTTTTAGCTCAAGTT
TTGGTCCGTGTGTTTATTTA

Downstream 100 bases:

>100_bases
GGAGATACAATGGCACTTACAACGCTAGAAATTAAAGATAAAACTTTTAAGACAAAATTCCGAGGATACTGTGAAGAAGA
AGTCAATGAATTCCTTGATA

Product: RNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MVSHSKIYQHFHQEEYPFIDRMSDMINRVGDYYLLEVTEFLNPREVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY
YDLEQSDFQIALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFVEMGYAQLMIKRELLDYFLGTITKIAKTSVKL
REVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKKSRTQVIALIEANKIKVNYRLANKASDNLVIGGDMVSIRGHGRF
TLLADNGVTKHGKQKITLSKMIHK

Sequences:

>Translated_264_residues
MVSHSKIYQHFHQEEYPFIDRMSDMINRVGDYYLLEVTEFLNPREVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY
YDLEQSDFQIALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFVEMGYAQLMIKRELLDYFLGTITKIAKTSVKL
REVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKKSRTQVIALIEANKIKVNYRLANKASDNLVIGGDMVSIRGHGRF
TLLADNGVTKHGKQKITLSKMIHK
>Mature_264_residues
MVSHSKIYQHFHQEEYPFIDRMSDMINRVGDYYLLEVTEFLNPREVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGY
YDLEQSDFQIALVEISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFVEMGYAQLMIKRELLDYFLGTITKIAKTSVKL
REVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKKSRTQVIALIEANKIKVNYRLANKASDNLVIGGDMVSIRGHGRF
TLLADNGVTKHGKQKITLSKMIHK

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30226; Mature: 30226

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSHSKIYQHFHQEEYPFIDRMSDMINRVGDYYLLEVTEFLNPREVMILKSLIALTDLKM
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHH
FVSTDYYPSEYGRVIIAPGYYDLEQSDFQIALVEISYQAKFNQLTHSQILGTLINELGVK
HHCCCCCCCCCCEEEEECCEECCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCH
RNLFGDVFVEMGYAQLMIKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNSQTLDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHCCCHHHHH
LVSSFRLDGVVATILKKSRTQVIALIEANKIKVNYRLANKASDNLVIGGDMVSIRGHGRF
HHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEEECCCCCCCEEECCCEEEEECCCEE
TLLADNGVTKHGKQKITLSKMIHK
EEEECCCCCCCCCCEEHHHHHHCC
>Mature Secondary Structure
MVSHSKIYQHFHQEEYPFIDRMSDMINRVGDYYLLEVTEFLNPREVMILKSLIALTDLKM
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEEEHHHHCCCHHHHHHHHHHHHHHHHH
FVSTDYYPSEYGRVIIAPGYYDLEQSDFQIALVEISYQAKFNQLTHSQILGTLINELGVK
HHCCCCCCCCCCEEEEECCEECCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCH
RNLFGDVFVEMGYAQLMIKRELLDYFLGTITKIAKTSVKLREVNFDQLIRSIDNSQTLDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHCCCHHHHH
LVSSFRLDGVVATILKKSRTQVIALIEANKIKVNYRLANKASDNLVIGGDMVSIRGHGRF
HHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEEECCCCCCCEEECCCEEEEECCCEE
TLLADNGVTKHGKQKITLSKMIHK
EEEECCCCCCCCCCEEHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]