Click here to switch to the map view.

The map label for this gene is int [H]

Identifier: 19745752

GI number: 19745752

Start: 578093

End: 579508

Strand: Reverse

Name: int [H]

Synonym: spyM18_0716

Alternate gene names: 19745752

Gene position: 579508-578093 (Counterclockwise)

Preceding gene: 19745753

Following gene: 19745744

Centisome position: 30.58

GC content: 32.06

Gene sequence:

>1416_bases
ATGAGAAAAGTAGCTATTTACTCTAGAGTATCAACAATAAATCAAGCCGAAGAAGGATATTCCATTCAAGGACAGATTGA
AGCTTTAACAAAGTATTGTGAGGCAATGGAATGGAAAATTTACAAAAACTACTCTGATGCAGGTTTTTCAGGCGGTAAAC
TTGAACGACCGGCAATAACAGAATTGATTGAAGACGGTAAAAACAATAAATTTGATACTATTTTAGTCTATAAACTAGAC
AGGCTATCAAGAAATGTAAAAGACACACTTTACTTAGTCAAAGATGTATTTACTGCTAACAATATCCATTTTGTCAGCTT
AAAAGAAAATATCGACACTTCTTCAGCAATGGGAAATCTCTTTCTCACTCTCTTGTCAGCTATTGCAGAGTTTGAAAGAG
AACAGATTAAAGAGCGAATGCAGTTTGGTGTTATGAATAGAGCAAAATCTGGAAAAACAACGGCTTGGAAAACACCACCT
TATGGATATAGATACAACAAAGACGAAAAAACATTGTCGGTCAACGAGTTAGAGGCTGCTAATGTCAGGCAGATGTTTGA
CATGATAATCTCTGGCTGCTCAATCATGTCAATTACAAATTACGCGAGAGACAATTTCGTCGGGAATACGTGGACACATG
TAAAAGTAAAAAGAATATTAGAAAACGAAACATATAAAGGATTAGTGAAGTATAGGGAACAAACTTTCTCAGGTGATCAT
CAAGCCATTATCGACGAAAAAACATATAATAAAGCGCAAATAGCTTTAGCACATAGGACAGATACGAAAACAAATACTAG
ACCTTTTCAAGGGAAATATATGCTTTCTCACATAGCAAAATGCGGTTATTGTGGTGCCCCTTTAAAAGTATGCACAGGAA
GAGCTAAGAACGATGGTACGAGAAGGCAAACTTACGTTTGTGTTAATAAAACAGAAAGTTTGGCTAGACGAAGTGTTAAT
AATTATAATAACCAAAAGATTTGTAACACTGGTCGATATGAAAAAAAACACATCGAAAAATATGTTATTGATGTTCTTTA
TAAACTTCAACACGATAAAGAATATCTTAAAAAAATAAAAAAAGATGACAATATAATTGATATTACACCTTTAAAAAAAG
AAATAGAGATAATCGATAAAAAAATCAATCGTCTAAACGATTTATATATTAATGATTTGATTGACCTACCAAAACTAAAA
AAAGACATCGAAGAACTCAATCATTTAAAAGATGATTATAACAAAGCAATTAAATTGAATTATTTAGACAAGAAAAACGA
AGACTCTCTTGGAATGCTGATGGATAACATTGACATTAGAAAATCTTCGTATGATGTTCAATCTAGGATAGTTAAGCAAT
TGATAGATAGAGTCGAGGTTACTATGGATAACATCGATATTATTTTTAAGTTTTAA

Upstream 100 bases:

>100_bases
TTGGCGACTCTGAGCGTGAGGCGAATCTAGTATAGTAAAAACCTGCTTTAAGTAGGTCTCTTTACTGTACTCATTTTAAC
AAAAAATGAGGTAAAAAACA

Downstream 100 bases:

>100_bases
AAGCATTATTTAGGCACTACAACGAGTATAGTTGTACATGCCATTATCAGTCTCCTTTACAAACGTTATTATCCCTTTTA
TCATATCACAGAACATCAGA

Product: bacteriophage 370.1 integrase

Products: NA

Alternate protein names: Stage IV sporulation protein CA [H]

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MRKVAIYSRVSTINQAEEGYSIQGQIEALTKYCEAMEWKIYKNYSDAGFSGGKLERPAITELIEDGKNNKFDTILVYKLD
RLSRNVKDTLYLVKDVFTANNIHFVSLKENIDTSSAMGNLFLTLLSAIAEFEREQIKERMQFGVMNRAKSGKTTAWKTPP
YGYRYNKDEKTLSVNELEAANVRQMFDMIISGCSIMSITNYARDNFVGNTWTHVKVKRILENETYKGLVKYREQTFSGDH
QAIIDEKTYNKAQIALAHRTDTKTNTRPFQGKYMLSHIAKCGYCGAPLKVCTGRAKNDGTRRQTYVCVNKTESLARRSVN
NYNNQKICNTGRYEKKHIEKYVIDVLYKLQHDKEYLKKIKKDDNIIDITPLKKEIEIIDKKINRLNDLYINDLIDLPKLK
KDIEELNHLKDDYNKAIKLNYLDKKNEDSLGMLMDNIDIRKSSYDVQSRIVKQLIDRVEVTMDNIDIIFKF

Sequences:

>Translated_471_residues
MRKVAIYSRVSTINQAEEGYSIQGQIEALTKYCEAMEWKIYKNYSDAGFSGGKLERPAITELIEDGKNNKFDTILVYKLD
RLSRNVKDTLYLVKDVFTANNIHFVSLKENIDTSSAMGNLFLTLLSAIAEFEREQIKERMQFGVMNRAKSGKTTAWKTPP
YGYRYNKDEKTLSVNELEAANVRQMFDMIISGCSIMSITNYARDNFVGNTWTHVKVKRILENETYKGLVKYREQTFSGDH
QAIIDEKTYNKAQIALAHRTDTKTNTRPFQGKYMLSHIAKCGYCGAPLKVCTGRAKNDGTRRQTYVCVNKTESLARRSVN
NYNNQKICNTGRYEKKHIEKYVIDVLYKLQHDKEYLKKIKKDDNIIDITPLKKEIEIIDKKINRLNDLYINDLIDLPKLK
KDIEELNHLKDDYNKAIKLNYLDKKNEDSLGMLMDNIDIRKSSYDVQSRIVKQLIDRVEVTMDNIDIIFKF
>Mature_471_residues
MRKVAIYSRVSTINQAEEGYSIQGQIEALTKYCEAMEWKIYKNYSDAGFSGGKLERPAITELIEDGKNNKFDTILVYKLD
RLSRNVKDTLYLVKDVFTANNIHFVSLKENIDTSSAMGNLFLTLLSAIAEFEREQIKERMQFGVMNRAKSGKTTAWKTPP
YGYRYNKDEKTLSVNELEAANVRQMFDMIISGCSIMSITNYARDNFVGNTWTHVKVKRILENETYKGLVKYREQTFSGDH
QAIIDEKTYNKAQIALAHRTDTKTNTRPFQGKYMLSHIAKCGYCGAPLKVCTGRAKNDGTRRQTYVCVNKTESLARRSVN
NYNNQKICNTGRYEKKHIEKYVIDVLYKLQHDKEYLKKIKKDDNIIDITPLKKEIEIIDKKINRLNDLYINDLIDLPKLK
KDIEELNHLKDDYNKAIKLNYLDKKNEDSLGMLMDNIDIRKSSYDVQSRIVKQLIDRVEVTMDNIDIIFKF

Specific function: Putative site-specific recombinase having a very important role in sporulation. It probably plays a role in the recombination of spoIIIC and spoIVCB to form sigma K factor [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=104, Percent_Identity=38.4615384615385, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006118
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 54719; Mature: 54719

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKVAIYSRVSTINQAEEGYSIQGQIEALTKYCEAMEWKIYKNYSDAGFSGGKLERPAIT
CCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHH
ELIEDGKNNKFDTILVYKLDRLSRNVKDTLYLVKDVFTANNIHFVSLKENIDTSSAMGNL
HHHHCCCCCCCCEEEEEEEHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
FLTLLSAIAEFEREQIKERMQFGVMNRAKSGKTTAWKTPPYGYRYNKDEKTLSVNELEAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCEEEHHHHHHH
NVRQMFDMIISGCSIMSITNYARDNFVGNTWTHVKVKRILENETYKGLVKYREQTFSGDH
HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
QAIIDEKTYNKAQIALAHRTDTKTNTRPFQGKYMLSHIAKCGYCGAPLKVCTGRAKNDGT
CEEECCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCCC
RRQTYVCVNKTESLARRSVNNYNNQKICNTGRYEKKHIEKYVIDVLYKLQHDKEYLKKIK
CEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
KDDNIIDITPLKKEIEIIDKKINRLNDLYINDLIDLPKLKKDIEELNHLKDDYNKAIKLN
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEE
YLDKKNEDSLGMLMDNIDIRKSSYDVQSRIVKQLIDRVEVTMDNIDIIFKF
ECCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHEECCEEEEEEC
>Mature Secondary Structure
MRKVAIYSRVSTINQAEEGYSIQGQIEALTKYCEAMEWKIYKNYSDAGFSGGKLERPAIT
CCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHH
ELIEDGKNNKFDTILVYKLDRLSRNVKDTLYLVKDVFTANNIHFVSLKENIDTSSAMGNL
HHHHCCCCCCCCEEEEEEEHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
FLTLLSAIAEFEREQIKERMQFGVMNRAKSGKTTAWKTPPYGYRYNKDEKTLSVNELEAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCEEEHHHHHHH
NVRQMFDMIISGCSIMSITNYARDNFVGNTWTHVKVKRILENETYKGLVKYREQTFSGDH
HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
QAIIDEKTYNKAQIALAHRTDTKTNTRPFQGKYMLSHIAKCGYCGAPLKVCTGRAKNDGT
CEEECCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCCC
RRQTYVCVNKTESLARRSVNNYNNQKICNTGRYEKKHIEKYVIDVLYKLQHDKEYLKKIK
CEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
KDDNIIDITPLKKEIEIIDKKINRLNDLYINDLIDLPKLKKDIEELNHLKDDYNKAIKLN
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEE
YLDKKNEDSLGMLMDNIDIRKSSYDVQSRIVKQLIDRVEVTMDNIDIIFKF
ECCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHEECCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2105293; 7704261; 8969508; 9384377 [H]