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The map label for this gene is agaC [H]

Identifier: 19745731

GI number: 19745731

Start: 555305

End: 556087

Strand: Reverse

Name: agaC [H]

Synonym: spyM18_0695

Alternate gene names: 19745731

Gene position: 556087-555305 (Counterclockwise)

Preceding gene: 19745732

Following gene: 19745730

Centisome position: 29.34

GC content: 43.42

Gene sequence:

>783_bases
ATGGTTATCAATTTGTTACAGGCACTTTTAATTGGTCTTTGGACAGCCTTTTGTTTCAGCGGAATGTTACTTGGCATCTA
CACCAACCGTTGTATTATTCTGTCTTTTGGTGTAGGGATTATCTTAGGTGACTTGCCAACTGCACTTAGCATGGGAGCTA
TCTCCGAATTAGCTTATATGGGATTTGGAGTGGGTGCCGGTGGTACCGTTCCTCCTAATCCTATCGGCCCTGGTATCTTT
GGTACCTTGATGGCTATTACCAGTGCTGGTAAAGTCACCCCAGAAGCGGCCCTAGCCTTATCAACACCAATCGCAGTTGC
CATCCAATTCCTTCAGACATTCGCCTATACAGCTTTCGCTGGGGCTCCTGAAACCGCTAAAAAACAATTGCAAAAAGGCA
ATATTAGAGGCTTCAAATTCGCTGCCAACGGCACTATCTGGGCTTTCGCTTTTATCGGATTAGGCCTTGGTTTATTAGGT
GCCTTGTCAATGGATACTCTCCTTCACTTGGTTGATTATATCCCACCTGTCTTGCTCAATGGATTGACTGTTGCTGGTAA
AATGTTACCTGCTATCGGATTTGCCATGATCTTATCAGTTATGGCCAAGAAGGAGTTGATTCCTTTTGTACTAATTGGTT
ATGTTTGTGCAGCCTACCTCCAAATTCCAACCATTGGTATCGCTATTATTGGTATCATTTTCGCCTTGAATGAATTTTAC
AACAAACCTAAACAAGTCGATGCAACAACTGTCCAAGGAGGCCAACAAGATGACTGGATCTAA

Upstream 100 bases:

>100_bases
TGACCACCAAGTGGTTTTTAACACCAAAACAACTCCAGCTGGCAATAGCGCCTCTGACGTTGACATCTTAGATTATATTT
AATGAATAAAGGAGATTGAT

Downstream 100 bases:

>100_bases
TAAATTAACCAAGAAAGATTACCTCAAAACAGCTCTGAGAGCTTTCTTCCTACAAAATGGGTTTAATTACAGTAATTACC
AAGGTATCGGATACGCCAAT

Product: PTS system, N-acetylgalactosamine-specific IIC component

Products: NA

Alternate protein names: EIIC-Aga; PTS system N-acetylgalactosamine-specific EIIC component 1 [H]

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MVINLLQALLIGLWTAFCFSGMLLGIYTNRCIILSFGVGIILGDLPTALSMGAISELAYMGFGVGAGGTVPPNPIGPGIF
GTLMAITSAGKVTPEAALALSTPIAVAIQFLQTFAYTAFAGAPETAKKQLQKGNIRGFKFAANGTIWAFAFIGLGLGLLG
ALSMDTLLHLVDYIPPVLLNGLTVAGKMLPAIGFAMILSVMAKKELIPFVLIGYVCAAYLQIPTIGIAIIGIIFALNEFY
NKPKQVDATTVQGGQQDDWI

Sequences:

>Translated_260_residues
MVINLLQALLIGLWTAFCFSGMLLGIYTNRCIILSFGVGIILGDLPTALSMGAISELAYMGFGVGAGGTVPPNPIGPGIF
GTLMAITSAGKVTPEAALALSTPIAVAIQFLQTFAYTAFAGAPETAKKQLQKGNIRGFKFAANGTIWAFAFIGLGLGLLG
ALSMDTLLHLVDYIPPVLLNGLTVAGKMLPAIGFAMILSVMAKKELIPFVLIGYVCAAYLQIPTIGIAIIGIIFALNEFY
NKPKQVDATTVQGGQQDDWI
>Mature_260_residues
MVINLLQALLIGLWTAFCFSGMLLGIYTNRCIILSFGVGIILGDLPTALSMGAISELAYMGFGVGAGGTVPPNPIGPGIF
GTLMAITSAGKVTPEAALALSTPIAVAIQFLQTFAYTAFAGAPETAKKQLQKGNIRGFKFAANGTIWAFAFIGLGLGLLG
ALSMDTLLHLVDYIPPVLLNGLTVAGKMLPAIGFAMILSVMAKKELIPFVLIGYVCAAYLQIPTIGIAIIGIIFALNEFY
NKPKQVDATTVQGGQQDDWI

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3715

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIC type-4 domain [H]

Homologues:

Organism=Escherichia coli, GI1789528, Length=245, Percent_Identity=31.0204081632653, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788121, Length=249, Percent_Identity=28.9156626506024, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004700
- InterPro:   IPR018404 [H]

Pfam domain/function: PF03609 EII-Sor [H]

EC number: NA

Molecular weight: Translated: 27218; Mature: 27218

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS51106 PTS_EIIC_TYPE_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCHHHCCCCCCCCCC
>Mature Secondary Structure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CCCCCCCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 8932697 [H]