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The map label for this gene is psd [H]

Identifier: 197294669

GI number: 197294669

Start: 622233

End: 623105

Strand: Direct

Name: psd [H]

Synonym: PAa_0627

Alternate gene names: 197294669

Gene position: 622233-623105 (Clockwise)

Preceding gene: 197294668

Following gene: 197294670

Centisome position: 70.71

GC content: 25.89

Gene sequence:

>873_bases
ATGAAAATCGTTAATTTAGAAGGAAAGGTAATTCAGGCAACTACTGTTTCTTCCATCCAAAAATTTTTATACACTAACTT
AGACAAAAACTTTTTTAAAAGAATCCTTTTAAAAATACTTATCACAAAGCCTATTTCTTGGTTATTTACTTTGTATTGGA
AAACACCTTGGTCATGCAGTTATGCAAATAAAATCATCCAAAGACATCAAATTGTTTTAAAAAATTTTGAAAAACAAGAA
TTTAGTTGTTACAATGATTTTTTTACTAGAAAATATAAGCAAATATCTTTTGACACAAACATCTTTTCTTTCATAAGTCC
TTGTGAAAGCAAATTAAGTATTTATCCAATTAAAGAGAATTTTTTTTACCAAATTAAAAACACTAATTATAGTTTAGTTG
ATTTATTGCAAAACAAAGAATTAGCAACAGAATATCAAAACGGATATTTACTTGTTTTTCGCTTAGAACCTCAAGATTAC
CATCGTTATCTTTTTGTAGATCAAGGATTTTTTGTAAATAAAACTAAAAAAATTAAAGGAAAATTGCATACTGTAAACCC
CATTGCTTTTGAAAATTTTGATGTTTTTAAAGAAAACACAAGAGAATATAGTATTTTACAAACTAAAAATTTTGGAAAAA
TAGTCCAAATGGAAGTAGGAGCTTTATTGGTTGGTAAAATCAAAAATCACCTTTGCAAAAATTTTCAAAAAGGTGAAGAA
AAAGGTTATTTTGAGTGTGGTGGGTCTACTATTGTTATTTTAGTTAAAAAAAATACGGTTCTTTTTGACCCACGCATCTT
AGAAAACACAAAAAAAAATTATGAAACCCAAATTAAAATTGGTGAAACAATTGGAAAAAAAATAAGCGGGTAA

Upstream 100 bases:

>100_bases
GAAAGCCAAAATACAAAAAAACTATTATTATTTTCGGTCTTTTTGGTCTTGTTGAAATATTTATTTTATTTGGAGTACAC
ATCTTAAGGACTCGTAGTTA

Downstream 100 bases:

>100_bases
TTTTTTTGTTTTTTTAACCTTCAATATTAATTTTAATATCTTATTAAAAAAACTAAAGAAAGGACTCAAACACTTGAATA
ACAAAAAATTAAAATCAAAA

Product: Phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MKIVNLEGKVIQATTVSSIQKFLYTNLDKNFFKRILLKILITKPISWLFTLYWKTPWSCSYANKIIQRHQIVLKNFEKQE
FSCYNDFFTRKYKQISFDTNIFSFISPCESKLSIYPIKENFFYQIKNTNYSLVDLLQNKELATEYQNGYLLVFRLEPQDY
HRYLFVDQGFFVNKTKKIKGKLHTVNPIAFENFDVFKENTREYSILQTKNFGKIVQMEVGALLVGKIKNHLCKNFQKGEE
KGYFECGGSTIVILVKKNTVLFDPRILENTKKNYETQIKIGETIGKKISG

Sequences:

>Translated_290_residues
MKIVNLEGKVIQATTVSSIQKFLYTNLDKNFFKRILLKILITKPISWLFTLYWKTPWSCSYANKIIQRHQIVLKNFEKQE
FSCYNDFFTRKYKQISFDTNIFSFISPCESKLSIYPIKENFFYQIKNTNYSLVDLLQNKELATEYQNGYLLVFRLEPQDY
HRYLFVDQGFFVNKTKKIKGKLHTVNPIAFENFDVFKENTREYSILQTKNFGKIVQMEVGALLVGKIKNHLCKNFQKGEE
KGYFECGGSTIVILVKKNTVLFDPRILENTKKNYETQIKIGETIGKKISG
>Mature_290_residues
MKIVNLEGKVIQATTVSSIQKFLYTNLDKNFFKRILLKILITKPISWLFTLYWKTPWSCSYANKIIQRHQIVLKNFEKQE
FSCYNDFFTRKYKQISFDTNIFSFISPCESKLSIYPIKENFFYQIKNTNYSLVDLLQNKELATEYQNGYLLVFRLEPQDY
HRYLFVDQGFFVNKTKKIKGKLHTVNPIAFENFDVFKENTREYSILQTKNFGKIVQMEVGALLVGKIKNHLCKNFQKGEE
KGYFECGGSTIVILVKKNTVLFDPRILENTKKNYETQIKIGETIGKKISG

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 2 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790604, Length=260, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6321609, Length=229, Percent_Identity=33.6244541484716, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 34154; Mature: 34154

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIVNLEGKVIQATTVSSIQKFLYTNLDKNFFKRILLKILITKPISWLFTLYWKTPWSCS
CEEEECCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHEEEEECCCCCHH
YANKIIQRHQIVLKNFEKQEFSCYNDFFTRKYKQISFDTNIFSFISPCESKLSIYPIKEN
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCHHHHHHCCCCCCCEEEEECCC
FFYQIKNTNYSLVDLLQNKELATEYQNGYLLVFRLEPQDYHRYLFVDQGFFVNKTKKIKG
EEEEEECCCCHHHHHHHCCHHHHHHCCCEEEEEEECCCCCEEEEEEECCEEECCCHHHCC
KLHTVNPIAFENFDVFKENTREYSILQTKNFGKIVQMEVGALLVGKIKNHLCKNFQKGEE
EEEECCCEEECCCHHHHCCCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC
KGYFECGGSTIVILVKKNTVLFDPRILENTKKNYETQIKIGETIGKKISG
CCEEEECCCEEEEEEECCEEEECCHHHHCCCCCCEEEEEECHHHHHCCCC
>Mature Secondary Structure
MKIVNLEGKVIQATTVSSIQKFLYTNLDKNFFKRILLKILITKPISWLFTLYWKTPWSCS
CEEEECCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHEEEEECCCCCHH
YANKIIQRHQIVLKNFEKQEFSCYNDFFTRKYKQISFDTNIFSFISPCESKLSIYPIKEN
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCHHHHHHCCCCCCCEEEEECCC
FFYQIKNTNYSLVDLLQNKELATEYQNGYLLVFRLEPQDYHRYLFVDQGFFVNKTKKIKG
EEEEEECCCCHHHHHHHCCHHHHHHCCCEEEEEEECCCCCEEEEEEECCEEECCCHHHCC
KLHTVNPIAFENFDVFKENTREYSILQTKNFGKIVQMEVGALLVGKIKNHLCKNFQKGEE
EEEECCCEEECCCHHHHCCCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC
KGYFECGGSTIVILVKKNTVLFDPRILENTKKNYETQIKIGETIGKKISG
CCEEEECCCEEEEEEECCEEEECCHHHHCCCCCCEEEEEECHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]