| Definition | Candidatus Phytoplasma australiense, complete genome. |
|---|---|
| Accession | NC_010544 |
| Length | 879,959 |
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The map label for this gene is nrdA [H]
Identifier: 197294206
GI number: 197294206
Start: 57002
End: 59572
Strand: Direct
Name: nrdA [H]
Synonym: PAa_0056
Alternate gene names: 197294206
Gene position: 57002-59572 (Clockwise)
Preceding gene: 197294205
Following gene: 197294207
Centisome position: 6.48
GC content: 31.27
Gene sequence:
>2571_bases ATGTTAGAACAAAAAATCAAAATAATTTATGACGGTTTAAAAAACGGCCAAGTTTATAATATGGCGCAAAGTCTTGGTTT TGATTTCAAACATATTAGCGAATGCCAAGCAAACGCTATAGATAATGATGTTTTTTTATTAACTCGTAGTGTTAAATTTG GCGAAGTATCTCAAGAAGCGAAACTTTTTTTAGATCAAAATCGTGATAAAGTCATTGGAGTTGCTGTTTCTGGCAATAAA ACCTGGGGTCAAAATTATGGCAAAGCAGGCGATATTATTGCCTCTACTTACAACATCCCTTTAGTTTTAAAATTTGAGGG TTCAGGAATCCAAGAAGAAAGACTTTTTTTAAAAAAATGGCTTCTTAGTTACAAAAAAGAAAAAAATTCCTCATTTTCTT TCAAAAAACCATTACAAAATGATTCTAATTTTTCGGATGTTACTGTTAAAAACACAAATGAACCAACCCCTCCCACACAA AAAATTTTGCCACCCTGGATTCTTCTTAATAATCAAATTATTGATGAAAATGGCAATATTAAAGATTTAAACAAAGACCA AGAAGCTTTAACAAGTTTTTTGTTAGAAGAAGTAAAGCCAAAATTAAAACACTTTGATACTTTAAAAGAAAAATTGACTT TTTTACAAACTAACGAATATTATGAAACTGATTTTTTAAGTCAATATAACGAACAACAAATTAAAGATATTTATAAAATA GCTTATCAAAAACAATTTCGTTTTTCTACTTTTATGGGAGCTTTCAAATTTTATAACGATTATGCCTTAAAAAGCAGAGA CAAAAAGTATTATTTAGAGACTTATGAAGACAGATTGTGCGTTAATGCTTTGTATCACGCTCAAGGAGATTTTGAAATTG CTAAAAGATTGATTAAATCTTTGATTAACCAAGATTTCACCCCAGCAACCCCAACTTTATTAAATGCAGGTAAAAAACAT CGTGGTGAATTTGTTTCTTGTTTCTTGTTAGAAGCAGGTGATTCTTTAAACGATATTGCTCGCATTAATGAATTTTCAAT GCAACTTTCCAAAATTGGTGGTGGAGTTTCTATTAACATTACTAATTTGCGTGCGAAAGGTGAAAGTATTAAAGGAATTA AGGGCGTGTGCAAAGGAGTTGTTGGCGTTTGTAAATTACTCGATCATAGTTTTCGTTATGCCGATCAAATGGGTCAAAGA ACGGGTGCGGGAGCAGTTTATTTAAGTGTTTTTCATGCCGATATTGAAGATTTTTTAAGTACTAAAAAACTGAATGCTGA TGAAGATGTTCGTGTAAAAACTTTATCTCTAGGAGTTATAGTGCCTAATAAAATGATTGAATTGGCAAGAAAAAACGAAG TCATGTATACTTTTTATCCTCATACTGTTTTTTTGGAATACGAAAAAAACTTCGCTGATATTGCAGTTAACATGGATTAT TGGTATGATATTTTGGTAAGCAATCCGAAAGTTCGCAAAAAAGCTATTCAACCGCGTCAATTATTAGAATTGATTGCTCG TATGCAAGGTGAGTCAGGCTATCCTTATTTAATGTTTTGCGATAACGTTAATCAAAACAACACCTCTCATTTACAAGTTA AATTTTCTAACTTATGCACAGAAATTCTTCAACCAACTATCACTTCTCATTATACTGATTACAACCACACCCAAGAAGAT AAAATTGGAATGGATGTATCTTGTAATTTAGCATCCGGTCACATGTCTAATATGATTAATAACAACACCATCAAAGAAAC TGTTTTTATGGCGATGGAAGTGATGAATACAGTTTCCATGAAAACAAATATCAATTATGTTCCTGCAGTGGCCAAAGCTA ATCGATTAAACCGAAGTGTTGGTTTTGGAATCATGGGTCATCATGGTTTTCTAGCTCAAAATTACATTGCTTTTGGCAGT GAAGAAAACAAAGATTTGATTGATGTTTTTTTTAATGCTATTAATTATTATAGTCTCTTGCATTCTTGTCAAAAAGCCAA AAAAACAGGACAAAAATTTTATCTTTTTGAAAAATCTCATTATGCGGATGGATCTTATTTTAAAGGCCGTGGAGAAATTT TACCAAAAACTGATAAAATCAAAAAAATGTTTGCCAATATTCCTTTGCCAAGTGAAAAAGATTGGCAACAACTTAAAAAA GATGTTCAACAATTTGGTCTTTTTAATTCTCATCGTCTAGCTGTTGCACCTAATGGCACAATTGGTTATATTATGGGAAC AACTCCTTCTTTAACACCAATTAAACAATTAGTAGAAGAACGTACATATGGAAATTCCAAAACTTATTGTCCAATGCCTG GATTAAAAGAAACCTCTTTTATGTATGTTACTGCTTACAAGATGAATAAATACCAATTAATTGATGTTATTGCTACCGCT CAAAAACATGTTGATCAAGGGATTTCCTTTGAACTTGGGATAACTTCTGATATTACAACACGTGAATTGCAAAGATATTA TCTTTACGCTCATCATAAAGGTATAAAAACACTTTATTATACTCGCACACAAAAATTAAAAGTTGATGAATGTGAAGCTT GTGGTGTTTAA
Upstream 100 bases:
>100_bases TTTTAAAGAATAATTTTTTAAGTCAAAAAAAGCTTAAAAAAGAGTTGCCTAAATTATTCCATTTTTTAAAAATAAAAAAA ATAAAATAAGGAGCGCTTTT
Downstream 100 bases:
>100_bases AATTTTTTTTAATAACGAGAATATAGTCCTTTAAAAATTGGGATTTTTGAATAAATAAAAATGATTTTTTCCAAACTGCT TATTAAAGTAGTTTGGTTTT
Product: Ribonucleotide reductase, alpha subunit
Products: NA
Alternate protein names: Ribonucleotide reductase large subunit [H]
Number of amino acids: Translated: 856; Mature: 856
Protein sequence:
>856_residues MLEQKIKIIYDGLKNGQVYNMAQSLGFDFKHISECQANAIDNDVFLLTRSVKFGEVSQEAKLFLDQNRDKVIGVAVSGNK TWGQNYGKAGDIIASTYNIPLVLKFEGSGIQEERLFLKKWLLSYKKEKNSSFSFKKPLQNDSNFSDVTVKNTNEPTPPTQ KILPPWILLNNQIIDENGNIKDLNKDQEALTSFLLEEVKPKLKHFDTLKEKLTFLQTNEYYETDFLSQYNEQQIKDIYKI AYQKQFRFSTFMGAFKFYNDYALKSRDKKYYLETYEDRLCVNALYHAQGDFEIAKRLIKSLINQDFTPATPTLLNAGKKH RGEFVSCFLLEAGDSLNDIARINEFSMQLSKIGGGVSINITNLRAKGESIKGIKGVCKGVVGVCKLLDHSFRYADQMGQR TGAGAVYLSVFHADIEDFLSTKKLNADEDVRVKTLSLGVIVPNKMIELARKNEVMYTFYPHTVFLEYEKNFADIAVNMDY WYDILVSNPKVRKKAIQPRQLLELIARMQGESGYPYLMFCDNVNQNNTSHLQVKFSNLCTEILQPTITSHYTDYNHTQED KIGMDVSCNLASGHMSNMINNNTIKETVFMAMEVMNTVSMKTNINYVPAVAKANRLNRSVGFGIMGHHGFLAQNYIAFGS EENKDLIDVFFNAINYYSLLHSCQKAKKTGQKFYLFEKSHYADGSYFKGRGEILPKTDKIKKMFANIPLPSEKDWQQLKK DVQQFGLFNSHRLAVAPNGTIGYIMGTTPSLTPIKQLVEERTYGNSKTYCPMPGLKETSFMYVTAYKMNKYQLIDVIATA QKHVDQGISFELGITSDITTRELQRYYLYAHHKGIKTLYYTRTQKLKVDECEACGV
Sequences:
>Translated_856_residues MLEQKIKIIYDGLKNGQVYNMAQSLGFDFKHISECQANAIDNDVFLLTRSVKFGEVSQEAKLFLDQNRDKVIGVAVSGNK TWGQNYGKAGDIIASTYNIPLVLKFEGSGIQEERLFLKKWLLSYKKEKNSSFSFKKPLQNDSNFSDVTVKNTNEPTPPTQ KILPPWILLNNQIIDENGNIKDLNKDQEALTSFLLEEVKPKLKHFDTLKEKLTFLQTNEYYETDFLSQYNEQQIKDIYKI AYQKQFRFSTFMGAFKFYNDYALKSRDKKYYLETYEDRLCVNALYHAQGDFEIAKRLIKSLINQDFTPATPTLLNAGKKH RGEFVSCFLLEAGDSLNDIARINEFSMQLSKIGGGVSINITNLRAKGESIKGIKGVCKGVVGVCKLLDHSFRYADQMGQR TGAGAVYLSVFHADIEDFLSTKKLNADEDVRVKTLSLGVIVPNKMIELARKNEVMYTFYPHTVFLEYEKNFADIAVNMDY WYDILVSNPKVRKKAIQPRQLLELIARMQGESGYPYLMFCDNVNQNNTSHLQVKFSNLCTEILQPTITSHYTDYNHTQED KIGMDVSCNLASGHMSNMINNNTIKETVFMAMEVMNTVSMKTNINYVPAVAKANRLNRSVGFGIMGHHGFLAQNYIAFGS EENKDLIDVFFNAINYYSLLHSCQKAKKTGQKFYLFEKSHYADGSYFKGRGEILPKTDKIKKMFANIPLPSEKDWQQLKK DVQQFGLFNSHRLAVAPNGTIGYIMGTTPSLTPIKQLVEERTYGNSKTYCPMPGLKETSFMYVTAYKMNKYQLIDVIATA QKHVDQGISFELGITSDITTRELQRYYLYAHHKGIKTLYYTRTQKLKVDECEACGV >Mature_856_residues MLEQKIKIIYDGLKNGQVYNMAQSLGFDFKHISECQANAIDNDVFLLTRSVKFGEVSQEAKLFLDQNRDKVIGVAVSGNK TWGQNYGKAGDIIASTYNIPLVLKFEGSGIQEERLFLKKWLLSYKKEKNSSFSFKKPLQNDSNFSDVTVKNTNEPTPPTQ KILPPWILLNNQIIDENGNIKDLNKDQEALTSFLLEEVKPKLKHFDTLKEKLTFLQTNEYYETDFLSQYNEQQIKDIYKI AYQKQFRFSTFMGAFKFYNDYALKSRDKKYYLETYEDRLCVNALYHAQGDFEIAKRLIKSLINQDFTPATPTLLNAGKKH RGEFVSCFLLEAGDSLNDIARINEFSMQLSKIGGGVSINITNLRAKGESIKGIKGVCKGVVGVCKLLDHSFRYADQMGQR TGAGAVYLSVFHADIEDFLSTKKLNADEDVRVKTLSLGVIVPNKMIELARKNEVMYTFYPHTVFLEYEKNFADIAVNMDY WYDILVSNPKVRKKAIQPRQLLELIARMQGESGYPYLMFCDNVNQNNTSHLQVKFSNLCTEILQPTITSHYTDYNHTQED KIGMDVSCNLASGHMSNMINNNTIKETVFMAMEVMNTVSMKTNINYVPAVAKANRLNRSVGFGIMGHHGFLAQNYIAFGS EENKDLIDVFFNAINYYSLLHSCQKAKKTGQKFYLFEKSHYADGSYFKGRGEILPKTDKIKKMFANIPLPSEKDWQQLKK DVQQFGLFNSHRLAVAPNGTIGYIMGTTPSLTPIKQLVEERTYGNSKTYCPMPGLKETSFMYVTAYKMNKYQLIDVIATA QKHVDQGISFELGITSDITTRELQRYYLYAHHKGIKTLYYTRTQKLKVDECEACGV
Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]
COG id: COG0209
COG function: function code F; Ribonucleotide reductase, alpha subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribonucleoside diphosphate reductase large chain family [H]
Homologues:
Organism=Homo sapiens, GI4506749, Length=647, Percent_Identity=25.8114374034003, Blast_Score=161, Evalue=2e-39, Organism=Escherichia coli, GI1789030, Length=693, Percent_Identity=39.97113997114, Blast_Score=511, Evalue=1e-146, Organism=Escherichia coli, GI2367133, Length=650, Percent_Identity=24.1538461538462, Blast_Score=149, Evalue=5e-37, Organism=Caenorhabditis elegans, GI17555242, Length=590, Percent_Identity=26.6101694915254, Blast_Score=165, Evalue=1e-40, Organism=Saccharomyces cerevisiae, GI6322123, Length=595, Percent_Identity=26.7226890756303, Blast_Score=166, Evalue=1e-41, Organism=Saccharomyces cerevisiae, GI6320914, Length=602, Percent_Identity=25.5813953488372, Blast_Score=157, Evalue=6e-39, Organism=Drosophila melanogaster, GI17352481, Length=696, Percent_Identity=24.7126436781609, Blast_Score=161, Evalue=2e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013346 - InterPro: IPR013509 - InterPro: IPR000788 - InterPro: IPR008926 - InterPro: IPR013554 [H]
Pfam domain/function: PF02867 Ribonuc_red_lgC; PF00317 Ribonuc_red_lgN; PF08343 RNR_N [H]
EC number: =1.17.4.1 [H]
Molecular weight: Translated: 97796; Mature: 97796
Theoretical pI: Translated: 8.91; Mature: 8.91
Prosite motif: PS00089 RIBORED_LARGE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEQKIKIIYDGLKNGQVYNMAQSLGFDFKHISECQANAIDNDVFLLTRSVKFGEVSQEA CCCCCEEHEECCCCCCEEEHHHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHH KLFLDQNRDKVIGVAVSGNKTWGQNYGKAGDIIASTYNIPLVLKFEGSGIQEERLFLKKW HHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHH LLSYKKEKNSSFSFKKPLQNDSNFSDVTVKNTNEPTPPTQKILPPWILLNNQIIDENGNI HHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCEEEECCEEECCCCCC KDLNKDQEALTSFLLEEVKPKLKHFDTLKEKLTFLQTNEYYETDFLSQYNEQQIKDIYKI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHH AYQKQFRFSTFMGAFKFYNDYALKSRDKKYYLETYEDRLCVNALYHAQGDFEIAKRLIKS HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH LINQDFTPATPTLLNAGKKHRGEFVSCFLLEAGDSLNDIARINEFSMQLSKIGGGVSINI HHCCCCCCCCCHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEE TNLRAKGESIKGIKGVCKGVVGVCKLLDHSFRYADQMGQRTGAGAVYLSVFHADIEDFLS EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHH TKKLNADEDVRVKTLSLGVIVPNKMIELARKNEVMYTFYPHTVFLEYEKNFADIAVNMDY HCCCCCCCCCEEEEEEEEEECCHHHHHHHHCCCEEEEEECCEEEEEECCCEEEEEEEHHH WYDILVSNPKVRKKAIQPRQLLELIARMQGESGYPYLMFCDNVNQNNTSHLQVKFSNLCT EEEEEECCCHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEHHHHHH EILQPTITSHYTDYNHTQEDKIGMDVSCNLASGHMSNMINNNTIKETVFMAMEVMNTVSM HHHCCHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHH KTNINYVPAVAKANRLNRSVGFGIMGHHGFLAQNYIAFGSEENKDLIDVFFNAINYYSLL HCCCCCCCCHHHHHHHCHHCCCEEECCCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHHH HSCQKAKKTGQKFYLFEKSHYADGSYFKGRGEILPKTDKIKKMFANIPLPSEKDWQQLKK HHHHHHHHCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH DVQQFGLFNSHRLAVAPNGTIGYIMGTTPSLTPIKQLVEERTYGNSKTYCPMPGLKETSF HHHHHCCCCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE MYVTAYKMNKYQLIDVIATAQKHVDQGISFELGITSDITTRELQRYYLYAHHKGIKTLYY EEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE TRTQKLKVDECEACGV ECCCCCCCCCHHCCCC >Mature Secondary Structure MLEQKIKIIYDGLKNGQVYNMAQSLGFDFKHISECQANAIDNDVFLLTRSVKFGEVSQEA CCCCCEEHEECCCCCCEEEHHHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHH KLFLDQNRDKVIGVAVSGNKTWGQNYGKAGDIIASTYNIPLVLKFEGSGIQEERLFLKKW HHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHH LLSYKKEKNSSFSFKKPLQNDSNFSDVTVKNTNEPTPPTQKILPPWILLNNQIIDENGNI HHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCEEEECCEEECCCCCC KDLNKDQEALTSFLLEEVKPKLKHFDTLKEKLTFLQTNEYYETDFLSQYNEQQIKDIYKI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHH AYQKQFRFSTFMGAFKFYNDYALKSRDKKYYLETYEDRLCVNALYHAQGDFEIAKRLIKS HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH LINQDFTPATPTLLNAGKKHRGEFVSCFLLEAGDSLNDIARINEFSMQLSKIGGGVSINI HHCCCCCCCCCHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEE TNLRAKGESIKGIKGVCKGVVGVCKLLDHSFRYADQMGQRTGAGAVYLSVFHADIEDFLS EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHH TKKLNADEDVRVKTLSLGVIVPNKMIELARKNEVMYTFYPHTVFLEYEKNFADIAVNMDY HCCCCCCCCCEEEEEEEEEECCHHHHHHHHCCCEEEEEECCEEEEEECCCEEEEEEEHHH WYDILVSNPKVRKKAIQPRQLLELIARMQGESGYPYLMFCDNVNQNNTSHLQVKFSNLCT EEEEEECCCHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEHHHHHH EILQPTITSHYTDYNHTQEDKIGMDVSCNLASGHMSNMINNNTIKETVFMAMEVMNTVSM HHHCCHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHH KTNINYVPAVAKANRLNRSVGFGIMGHHGFLAQNYIAFGSEENKDLIDVFFNAINYYSLL HCCCCCCCCHHHHHHHCHHCCCEEECCCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHHH HSCQKAKKTGQKFYLFEKSHYADGSYFKGRGEILPKTDKIKKMFANIPLPSEKDWQQLKK HHHHHHHHCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH DVQQFGLFNSHRLAVAPNGTIGYIMGTTPSLTPIKQLVEERTYGNSKTYCPMPGLKETSF HHHHHCCCCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE MYVTAYKMNKYQLIDVIATAQKHVDQGISFELGITSDITTRELQRYYLYAHHKGIKTLYY EEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE TRTQKLKVDECEACGV ECCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969495; 9384377 [H]