Click here to switch to the map view.

The map label for this gene is himA [C]

Identifier: 197294200

GI number: 197294200

Start: 44540

End: 44857

Strand: Direct

Name: himA [C]

Synonym: PAa_0042

Alternate gene names: 197294200

Gene position: 44540-44857 (Clockwise)

Preceding gene: 197294199

Following gene: 197294201

Centisome position: 5.06

GC content: 26.73

Gene sequence:

>318_bases
ATGACTAAAAAAGAAAAATTAAAAAAACTAACAAAAAAAGAATTAATCAAAAACCTCGCAGTAATGAATAACACTTCGGT
TACTCAAACTCAAGATTTTTACAATTCGTTTGAAAATGCTTTAATTGAAGCAATCAAATCAAACGAAGAAGTAATAATAT
CGCCAAAAATTGGTAAATTCATCTTAAAATCAAGAAAAGCCCATAAAGGACGAAATCCTCAAACAGGTAAAAAACTAAAA
ATCCCTGCAAAAACTGTGGTAAATTTCAAACTATCAAAAACCCTCAAAGATGAAGTTAAAAACCTTAAATTAAAATAA

Upstream 100 bases:

>100_bases
AGAATAGCTTTTATATACAAACACCATCCTAATGGTAAATTGTTTAAAAGAACTTACTACAACTCCGATGGAACAATCAT
AAAAGAAAGGAGCAAAAACA

Downstream 100 bases:

>100_bases
AAAAGAAAAGGAAAAATAAAAAAATGTATCGAGTTGATAGAAATAATTTTTTCAAAAATGAAAAAAAAGCTACTATTTAT
ACTCCCAGTTGGCTATCGCA

Product: DNA-binding protein HU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 104

Protein sequence:

>105_residues
MTKKEKLKKLTKKELIKNLAVMNNTSVTQTQDFYNSFENALIEAIKSNEEVIISPKIGKFILKSRKAHKGRNPQTGKKLK
IPAKTVVNFKLSKTLKDEVKNLKLK

Sequences:

>Translated_105_residues
MTKKEKLKKLTKKELIKNLAVMNNTSVTQTQDFYNSFENALIEAIKSNEEVIISPKIGKFILKSRKAHKGRNPQTGKKLK
IPAKTVVNFKLSKTLKDEVKNLKLK
>Mature_104_residues
TKKEKLKKLTKKELIKNLAVMNNTSVTQTQDFYNSFENALIEAIKSNEEVIISPKIGKFILKSRKAHKGRNPQTGKKLKI
PAKTVVNFKLSKTLKDEVKNLKLK

Specific function: Histone-Like DNA-Binding Protein Which Is Capable Of Wrapping DNA To Stabilize It, And Thus To Prevent Its Denaturation Under Extreme Environmental Conditions. [C]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11997; Mature: 11866

Theoretical pI: Translated: 11.03; Mature: 11.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKEKLKKLTKKELIKNLAVMNNTSVTQTQDFYNSFENALIEAIKSNEEVIISPKIGKF
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHH
ILKSRKAHKGRNPQTGKKLKIPAKTVVNFKLSKTLKDEVKNLKLK
HHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TKKEKLKKLTKKELIKNLAVMNNTSVTQTQDFYNSFENALIEAIKSNEEVIISPKIGKF
CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHH
ILKSRKAHKGRNPQTGKKLKIPAKTVVNFKLSKTLKDEVKNLKLK
HHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA