Click here to switch to the map view.

The map label for this gene is allS [H]

Identifier: 197120392

GI number: 197120392

Start: 4578142

End: 4579068

Strand: Direct

Name: allS [H]

Synonym: Gbem_4033

Alternate gene names: 197120392

Gene position: 4578142-4579068 (Clockwise)

Preceding gene: 197120379

Following gene: 197120393

Centisome position: 99.2

GC content: 59.22

Gene sequence:

>927_bases
ATGGATCTGGTAAACCTTAAGACTCTTATTGAGTCGGCCGAATGCGGCAGTTTTTCCAAAGCTGCAGAGAGGCTATTCGT
GACGCAGTCCGCGGTTTCCCGGCGCATAAAGATACTCGAAGATCACTACGGCCACCTGCTTCTTGATCGTTCCGGCCCAG
TACTGACTCCGACCACGGCCGGGGAGCTGCTGATTGAGAAAGCGCGCCAGTTCTTGAGGTTGGAACAGGACTTCGTGCAA
GAACTCCAGGCTTTGAGACAGAAAAAGAAGATCTCCTTCTGCTGCACGACCCCCTTCGGCGTCTCCTATCTCCCCGACAT
CTTTACCAGTTTCATGGCCACAAAGGCACAGGACACCGAACTCGAGTTCGTCTTCGAGATGCCGGAGGCGGCGCTCAAGG
GGCTCAGGGAAAAACTCTTCGACCTGGTGCTCATCGAGTACTGCGAAGACCTGAACCTGCAGGAGTTCGACTCCTACCCC
CTCCCCGACGACGAGATGGTCTTCGTCAGCGCCCCGGGCTACGGCATCGATGCGCCGCTGGTGGAGGTTGACACCCTGCT
TTCGCAGCGCCTTTACTGCAAGAAAAGCGGCTGCTGCGCGCGGCGCTTCCTGGAAAAGAGCATGCAAACCCTGGGAAGAG
ACGCGGCGGAATTCAGCAATACGGTGTTTTTCGACGATATCCCCTTCATCATCAGGGCCGTCATGGCCGGCAACGGGATC
ACATTCATCTCGCGCAGCGTCGTCGCCTCCGCCCTGGAAAGCGGCGAGCTCATCGCGCACCAGGTCCAGGGGTTCGACAC
CTCCCGCCCACGGCGGCTGGTGCTCAGGCGCGATTGCAGCCCCGACCCGGCACTCCTCGATTTCATCCAGGGGATCTTCC
GGCACTTCTCCCTCAACCCTCCCCCCCAGTTCTCCACCGCAGCCTGA

Upstream 100 bases:

>100_bases
CGTGTTGCAATGCTATAGGATTAGTTGCAATATACCCAAACGAAACAAACTCATAAGGCCATGACGCTTTGGCATACTCT
CTCAGGAGGGAGAGCACCTG

Downstream 100 bases:

>100_bases
ACCCGACCTGAACGACCCGTACCAGACGCTCCCTTCCCCTTTCGCAGCGCTCCCAGTCCGCCGCCGCACCCTTCCATTAA
AATAAATTAGTGATACCCTA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MDLVNLKTLIESAECGSFSKAAERLFVTQSAVSRRIKILEDHYGHLLLDRSGPVLTPTTAGELLIEKARQFLRLEQDFVQ
ELQALRQKKKISFCCTTPFGVSYLPDIFTSFMATKAQDTELEFVFEMPEAALKGLREKLFDLVLIEYCEDLNLQEFDSYP
LPDDEMVFVSAPGYGIDAPLVEVDTLLSQRLYCKKSGCCARRFLEKSMQTLGRDAAEFSNTVFFDDIPFIIRAVMAGNGI
TFISRSVVASALESGELIAHQVQGFDTSRPRRLVLRRDCSPDPALLDFIQGIFRHFSLNPPPQFSTAA

Sequences:

>Translated_308_residues
MDLVNLKTLIESAECGSFSKAAERLFVTQSAVSRRIKILEDHYGHLLLDRSGPVLTPTTAGELLIEKARQFLRLEQDFVQ
ELQALRQKKKISFCCTTPFGVSYLPDIFTSFMATKAQDTELEFVFEMPEAALKGLREKLFDLVLIEYCEDLNLQEFDSYP
LPDDEMVFVSAPGYGIDAPLVEVDTLLSQRLYCKKSGCCARRFLEKSMQTLGRDAAEFSNTVFFDDIPFIIRAVMAGNGI
TFISRSVVASALESGELIAHQVQGFDTSRPRRLVLRRDCSPDPALLDFIQGIFRHFSLNPPPQFSTAA
>Mature_308_residues
MDLVNLKTLIESAECGSFSKAAERLFVTQSAVSRRIKILEDHYGHLLLDRSGPVLTPTTAGELLIEKARQFLRLEQDFVQ
ELQALRQKKKISFCCTTPFGVSYLPDIFTSFMATKAQDTELEFVFEMPEAALKGLREKLFDLVLIEYCEDLNLQEFDSYP
LPDDEMVFVSAPGYGIDAPLVEVDTLLSQRLYCKKSGCCARRFLEKSMQTLGRDAAEFSNTVFFDDIPFIIRAVMAGNGI
TFISRSVVASALESGELIAHQVQGFDTSRPRRLVLRRDCSPDPALLDFIQGIFRHFSLNPPPQFSTAA

Specific function: Positive regulator essential for the expression of AllD operon. Binds to the AllD promoter [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786713, Length=288, Percent_Identity=27.0833333333333, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34618; Mature: 34618

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLVNLKTLIESAECGSFSKAAERLFVTQSAVSRRIKILEDHYGHLLLDRSGPVLTPTTA
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEECCCCH
GELLIEKARQFLRLEQDFVQELQALRQKKKISFCCTTPFGVSYLPDIFTSFMATKAQDTE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHCCCCCCC
LEFVFEMPEAALKGLREKLFDLVLIEYCEDLNLQEFDSYPLPDDEMVFVSAPGYGIDAPL
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCEEEEECCCCCCCCCH
VEVDTLLSQRLYCKKSGCCARRFLEKSMQTLGRDAAEFSNTVFFDDIPFIIRAVMAGNGI
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHCCCEEECCHHHHHHHHHHCCCH
TFISRSVVASALESGELIAHQVQGFDTSRPRRLVLRRDCSPDPALLDFIQGIFRHFSLNP
HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
PPQFSTAA
CCCCCCCC
>Mature Secondary Structure
MDLVNLKTLIESAECGSFSKAAERLFVTQSAVSRRIKILEDHYGHLLLDRSGPVLTPTTA
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEECCCCH
GELLIEKARQFLRLEQDFVQELQALRQKKKISFCCTTPFGVSYLPDIFTSFMATKAQDTE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHCCCCCCC
LEFVFEMPEAALKGLREKLFDLVLIEYCEDLNLQEFDSYPLPDDEMVFVSAPGYGIDAPL
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCEEEEECCCCCCCCCH
VEVDTLLSQRLYCKKSGCCARRFLEKSMQTLGRDAAEFSNTVFFDDIPFIIRAVMAGNGI
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHCCCEEECCHHHHHHHHHHCCCH
TFISRSVVASALESGELIAHQVQGFDTSRPRRLVLRRDCSPDPALLDFIQGIFRHFSLNP
HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
PPQFSTAA
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]