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The map label for this gene is yqhC [H]

Identifier: 197120342

GI number: 197120342

Start: 4518166

End: 4519101

Strand: Direct

Name: yqhC [H]

Synonym: Gbem_3981

Alternate gene names: 197120342

Gene position: 4518166-4519101 (Clockwise)

Preceding gene: 308535395

Following gene: 197120343

Centisome position: 97.9

GC content: 53.63

Gene sequence:

>936_bases
ATGGAAATTTCGACTACCGATCAAGATATTGAGGCTAATGCCTTGGACATGGCAGTTGCTGCTCTTTGCAGTCGCATTGC
CCGATATACCGAACGGGGAGAAATGCATATAACCGCAGTTCCCGGGTTGTCTCTCTTTCGTCGGGAGGAACCAAGCGGAC
CAACCAGCGGCATGTACGAACCGAGCATCTGCATGGCCGTGCAGGGTGCAAAGCGCGTAATTCTCGGTGATGACTCATTT
GTATATGATTCACACCACTATCTGATTACGTCAGTGCATCTGCCGACGATCGTGCAGATTCTCGAAGCAAGCCCGGAAAA
GCCGTACCTTGGTCTCCGTTTAAAGTTCGACCTGAAGGAAATTTCGCAACTGATGGTCGACAGCAACCTCCCTCAACCAC
GCCAGCAGTCGAGCCGTGGGATGGCGACCGGCGAGGTGACACAACAGATTGTCAATGCTTTTGCACGGTTAATTGATCTG
CTTGACGATGAAAAGGACATTCCGATCCTCGCTCCGGTCATCCAGCGCGAGATCATCTATCGGCTGTTGGTGGGAGATCA
AGGCGAGCGGCTTCGTCAGATCGCAACGGCTGGGAGTCAAAGCCAGCACATTGCCAAGGCAATCGGTTGGTTGAAGAGCA
ATTACTCACAGGCTATCAGCATGGAGGAACTCGCTGCTCTGACAAACATGAGCGTTTCGACGTTCCACCATCACTTTCGG
TCACTGACAGCGTTGAGCCCGCTGCAGTTCCAGAAGCAACTCCGCCTGCAGGAAGCGAGAAGATTGATGCTGACAGAACG
GATGGATGCCGCTGCCGCAGCGTTTCAGGTCGGCTACGAGAGTCCGTCACAGTTCAGTCGAGAATATAACCGCCTGTTTG
GGGCGCCGCCGTTGCGGGATATCTCGAAACTGCGCGAGATGGTTGTCGCGGCATAA

Upstream 100 bases:

>100_bases
GATAGACCGATCCTCTCGGTTTATTGCCCGATCCTGCATTGCACCAAATTATTATTGTAACGGTGCGGTAGGTTGGATAG
TATCGAATTTGGAGGAAGTT

Downstream 100 bases:

>100_bases
GAGGGCGAACGTATCAGGGCGAAGGTGGGAAGCGGGGTCCAAGCACTGGCGCCGGCGCTCGCCGAAGCCTGGGGCCGCTC
TTTATCAGAGCGGGGCGGGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MEISTTDQDIEANALDMAVAALCSRIARYTERGEMHITAVPGLSLFRREEPSGPTSGMYEPSICMAVQGAKRVILGDDSF
VYDSHHYLITSVHLPTIVQILEASPEKPYLGLRLKFDLKEISQLMVDSNLPQPRQQSSRGMATGEVTQQIVNAFARLIDL
LDDEKDIPILAPVIQREIIYRLLVGDQGERLRQIATAGSQSQHIAKAIGWLKSNYSQAISMEELAALTNMSVSTFHHHFR
SLTALSPLQFQKQLRLQEARRLMLTERMDAAAAAFQVGYESPSQFSREYNRLFGAPPLRDISKLREMVVAA

Sequences:

>Translated_311_residues
MEISTTDQDIEANALDMAVAALCSRIARYTERGEMHITAVPGLSLFRREEPSGPTSGMYEPSICMAVQGAKRVILGDDSF
VYDSHHYLITSVHLPTIVQILEASPEKPYLGLRLKFDLKEISQLMVDSNLPQPRQQSSRGMATGEVTQQIVNAFARLIDL
LDDEKDIPILAPVIQREIIYRLLVGDQGERLRQIATAGSQSQHIAKAIGWLKSNYSQAISMEELAALTNMSVSTFHHHFR
SLTALSPLQFQKQLRLQEARRLMLTERMDAAAAAFQVGYESPSQFSREYNRLFGAPPLRDISKLREMVVAA
>Mature_311_residues
MEISTTDQDIEANALDMAVAALCSRIARYTERGEMHITAVPGLSLFRREEPSGPTSGMYEPSICMAVQGAKRVILGDDSF
VYDSHHYLITSVHLPTIVQILEASPEKPYLGLRLKFDLKEISQLMVDSNLPQPRQQSSRGMATGEVTQQIVNAFARLIDL
LDDEKDIPILAPVIQREIIYRLLVGDQGERLRQIATAGSQSQHIAKAIGWLKSNYSQAISMEELAALTNMSVSTFHHHFR
SLTALSPLQFQKQLRLQEARRLMLTERMDAAAAAFQVGYESPSQFSREYNRLFGAPPLRDISKLREMVVAA

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=270, Percent_Identity=37.037037037037, Blast_Score=179, Evalue=2e-46,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34787; Mature: 34787

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEISTTDQDIEANALDMAVAALCSRIARYTERGEMHITAVPGLSLFRREEPSGPTSGMYE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCCCCCCC
PSICMAVQGAKRVILGDDSFVYDSHHYLITSVHLPTIVQILEASPEKPYLGLRLKFDLKE
CCHHEEECCCCEEEECCCCEEEECCCEEEEEEHHHHHHHHHHCCCCCCEEEEEEEECHHH
ISQLMVDSNLPQPRQQSSRGMATGEVTQQIVNAFARLIDLLDDEKDIPILAPVIQREIIY
HHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
RLLVGDQGERLRQIATAGSQSQHIAKAIGWLKSNYSQAISMEELAALTNMSVSTFHHHFR
HHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
SLTALSPLQFQKQLRLQEARRLMLTERMDAAAAAFQVGYESPSQFSREYNRLFGAPPLRD
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHH
ISKLREMVVAA
HHHHHHHHHCC
>Mature Secondary Structure
MEISTTDQDIEANALDMAVAALCSRIARYTERGEMHITAVPGLSLFRREEPSGPTSGMYE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCCCCCCC
PSICMAVQGAKRVILGDDSFVYDSHHYLITSVHLPTIVQILEASPEKPYLGLRLKFDLKE
CCHHEEECCCCEEEECCCCEEEECCCEEEEEEHHHHHHHHHHCCCCCCEEEEEEEECHHH
ISQLMVDSNLPQPRQQSSRGMATGEVTQQIVNAFARLIDLLDDEKDIPILAPVIQREIIY
HHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
RLLVGDQGERLRQIATAGSQSQHIAKAIGWLKSNYSQAISMEELAALTNMSVSTFHHHFR
HHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
SLTALSPLQFQKQLRLQEARRLMLTERMDAAAAAFQVGYESPSQFSREYNRLFGAPPLRD
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHH
ISKLREMVVAA
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]