Click here to switch to the map view.

The map label for this gene is radC [C]

Identifier: 197120145

GI number: 197120145

Start: 4320861

End: 4321556

Strand: Direct

Name: radC [C]

Synonym: Gbem_3784

Alternate gene names: 197120145

Gene position: 4320861-4321556 (Clockwise)

Preceding gene: 197120144

Following gene: 197120146

Centisome position: 93.62

GC content: 62.64

Gene sequence:

>696_bases
ATGAGCGGCGGAATCAAGTGCTGGCCCGAGAAAGAGCGGCCTCGGGAGAAGCTCATGCAGCATGGAGTGTCGTTCCTCTC
CGAGGCGGAACTCCTCGCCTTGATCCTGAAAAGCGGCGACGCAGCCAGCAGACGCAGCGCCCTCGATTTGGGGCGCGAGC
TGATGCTCCAGTTCGGCTCGCTGAGCCTTTTGGCCGACGCCTCCTGCAGCGAGCTCCAGAAGGTGAAAGGGATCGGCCCC
GCCAAGGCCACCTGTATCTTGGCGGCGCTCGACCTTGCCCGGCGCATCAAGGAAAGAGACCGCCGCCCCATCGAGTCACT
CACCCGCTTCACCTCCGCGTCCCAAGTCTTCGAGCACCTGAACCCGGAATTCAGGGACAGGCACAAGGAGCAGTTCATGG
CGCTGCTTCTGGACGGCAAGAACCGCATCATCTCCCGCGCCCAGATCTCTGAAGGGTCGCTGAACCAGAGCATCGTCCAC
CCCCGGGAAGTCTTCAACGTCGCGGTACGCCACTCAGCCGCCGCGATGATCCTTTTGCACAACCATCCCACCGGAGACCC
GGCACCAAGCCCCGAAGACATGGAAGTAACCCGCCGCCTGTGCGAGGCGGGACAGCTCTTGGGGATCAGGGTGCTGGACC
ACATCATCATCGGCGAAAACGAGTTCTACAGCTTTGCGGAACACGGCCGGCTGTGA

Upstream 100 bases:

>100_bases
TTCCCTATCTTCTAGTTTTTGCTGCGCCTGGCAAACTCCCCCTCTTCGGTTATGATTGACCTTTGTTTTTTTCCGCCGGG
TACCCGGCGGGGGAGGTCAT

Downstream 100 bases:

>100_bases
CTGCCGATATCCTCGCCATAATTCAAGGGGTTTACTTCCTGCTCCCCGGGCTCTGGCCGCTTTTCAGCATCAAGACCTTC
ATGGCCGTGACCGGACCGAA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSGGIKCWPEKERPREKLMQHGVSFLSEAELLALILKSGDAASRRSALDLGRELMLQFGSLSLLADASCSELQKVKGIGP
AKATCILAALDLARRIKERDRRPIESLTRFTSASQVFEHLNPEFRDRHKEQFMALLLDGKNRIISRAQISEGSLNQSIVH
PREVFNVAVRHSAAAMILLHNHPTGDPAPSPEDMEVTRRLCEAGQLLGIRVLDHIIIGENEFYSFAEHGRL

Sequences:

>Translated_231_residues
MSGGIKCWPEKERPREKLMQHGVSFLSEAELLALILKSGDAASRRSALDLGRELMLQFGSLSLLADASCSELQKVKGIGP
AKATCILAALDLARRIKERDRRPIESLTRFTSASQVFEHLNPEFRDRHKEQFMALLLDGKNRIISRAQISEGSLNQSIVH
PREVFNVAVRHSAAAMILLHNHPTGDPAPSPEDMEVTRRLCEAGQLLGIRVLDHIIIGENEFYSFAEHGRL
>Mature_230_residues
SGGIKCWPEKERPREKLMQHGVSFLSEAELLALILKSGDAASRRSALDLGRELMLQFGSLSLLADASCSELQKVKGIGPA
KATCILAALDLARRIKERDRRPIESLTRFTSASQVFEHLNPEFRDRHKEQFMALLLDGKNRIISRAQISEGSLNQSIVHP
REVFNVAVRHSAAAMILLHNHPTGDPAPSPEDMEVTRRLCEAGQLLGIRVLDHIIIGENEFYSFAEHGRL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=221, Percent_Identity=38.0090497737557, Blast_Score=150, Evalue=8e-38,
Organism=Escherichia coli, GI1788997, Length=132, Percent_Identity=43.9393939393939, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI2367100, Length=140, Percent_Identity=42.1428571428571, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1788312, Length=140, Percent_Identity=41.4285714285714, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25753; Mature: 25622

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGGIKCWPEKERPREKLMQHGVSFLSEAELLALILKSGDAASRRSALDLGRELMLQFGS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
LSLLADASCSELQKVKGIGPAKATCILAALDLARRIKERDRRPIESLTRFTSASQVFEHL
HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
NPEFRDRHKEQFMALLLDGKNRIISRAQISEGSLNQSIVHPREVFNVAVRHSAAAMILLH
CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHEEEEEEE
NHPTGDPAPSPEDMEVTRRLCEAGQLLGIRVLDHIIIGENEFYSFAEHGRL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC
>Mature Secondary Structure 
SGGIKCWPEKERPREKLMQHGVSFLSEAELLALILKSGDAASRRSALDLGRELMLQFGS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
LSLLADASCSELQKVKGIGPAKATCILAALDLARRIKERDRRPIESLTRFTSASQVFEHL
HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
NPEFRDRHKEQFMALLLDGKNRIISRAQISEGSLNQSIVHPREVFNVAVRHSAAAMILLH
CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHEEEEEEE
NHPTGDPAPSPEDMEVTRRLCEAGQLLGIRVLDHIIIGENEFYSFAEHGRL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA