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The map label for this gene is tex [C]

Identifier: 197119399

GI number: 197119399

Start: 3494090

End: 3496354

Strand: Direct

Name: tex [C]

Synonym: Gbem_3028

Alternate gene names: 197119399

Gene position: 3494090-3496354 (Clockwise)

Preceding gene: 197119398

Following gene: 197119420

Centisome position: 75.71

GC content: 64.11

Gene sequence:

>2265_bases
ATGCACGCAACAGACACACCTCAATTGCTTGAAATCATAGTCGAAGAAAGCGGGCTGCCGCGCGGCGGCGTGCTCCAGAC
GGTGGCACTTTTGAACGAGGGGGGAACGGTTCCCTTCATCGCGCGATACCGGAAGGAGCAGACCGGAGAACTGGACGAGG
TCCAGATCCGCCAGATCGAGGACCTGCTGATCTATCACCGCGAGCTGTCCGAGCGCAAGGTGACGGTGCTGAAAAGTATC
GAGGAGCAGGGAAAGCTCACCCCGGAGCTTTCGGCTCGCATCGCGAGCTGCCGCAAGAAGACCGACCTGGAAGACCTGTA
CCTCCCCTACAAGCCGAAGCGCCGCACCAAGGCCACCATCGCGCGGGAGAAGAGGCTGGAGCCCCTGGCAGAACTGATCG
CGGCGCAGGAGTTGACCACGGGAAGCCCGGCTGAGGCGGCGGCTCCTTTTATCAACGCCGAGTTGGGCGTACCCGACGCA
GAGGCCGCCCTGGAAGGGGCTGCACACATCATCGCCGAGCAGTTGAGCGAGAACGCGGACTTGCGCGGCATGGTGCGCGA
CCTTACCAGGGAGCAGGGGATATTCGGCTCGCTGCTGATCGGCGAAGGGGCCGACAAAGACGGCAAGTTCCGGATGTACT
ACGACTACCAGGAGCCGCTGAAGTCGATACCGTCCCACCGCATGCTCGCCATGCGGCGCGGCGAAAAGGAAGACGTCTTA
AGGCTCGCCCTGCTGGCGCCGGAAGAGGAGATCGTCGGGAGGCTGAAGGGGGCGTTGGTCAAACGGGAGAGCATCTTCAA
GGGGATCCTGGAAGCGGCGGCAGCCGACGCCTACAAGCGGCTCATCGCCCCCTCGATCGAGGTGGAACTGCGGCTTGAGG
CAAAGACCCGCGCAGACGAGGCGGCCATCGCCGTTTTCGCGCAGAACCTGAAGAACCTTTTGCTCCTGCCGCCGGCCGGA
GGGAGGCGGGTGCTGGGGATCGACCCGGGCCTTAGAACCGGCTGCAAGCTCGCCGCGATCAGCGAGACCGGGCGCTTTCT
GGAGCATGTCACCATCTACCCGCACACAGGCGGAGCCAAGGCGGAGGCGGCCGGCGCCGAACTGGCGGGGATGGTGCAGC
GCAACGACTGCCTTCTCATTGCCATAGGCAACGGCACCGGGGGGCGCGAGACCGAGATCTTCGTGCGCGACGCATTGAGG
AAGGCGGGGATAAAGGCGGAGACGGTGATGGTGAACGAGGCGGGCGCCAGCATCTACTCCGCCTCGGAGATCGCCAGGGA
GGAGTTCCCCGAACTCGACCTGACCGTCCGCGGCGCCATATCCATCGGCCGCAGGCTACAGGACCCGCTCGCCGAACTGG
TGAAGATCGACCCCAAGAGCATCGGGGTGGGCCAGTACCAGCACGACGTGAACCAGACCCTGCTGAAAAAGGCGCTGGAC
GCGGTGGTGGAATCCTGCGTCAACTTCGTCGGCGTCGACTTGAACAGCGCCTCGTGGGCCCTGCTCTCCTACGTCGCCGG
CCTCTCGGAAAGGCAGGGGCGGGCCATCGTCAGGCACAGGGACGAGCAAGGAGCCTTCGCGTCGCGGCAGTCGCTCCTAA
AGGTCGCGCGCTTCGGTCCGAAGGCGTTCGAGCAGGCGGCGGGCTTTTTACGGATCCGGGGTGGGGAGAACCCGCTGGAC
AATACTGCGGTACACCCGGAGAACTACGCGGTGGTCGAGAAGATGGCGGCTGACCTCGGGGTGAGCCTGTCGCAACTGGT
GGCGGACCCGGGTCTTTCGGCCGGAATCAGGATCGAGCGCTACGTGACCGACACCATCGGCATTCCGACGCTGCGCGATA
TCCTGGCGGAGCTTAAGAAACCGGGGCGCGACCCGCGCGAGCAGTTCCAGAGCGCGAGCTTCAGAGAGGACGTGGTGACC
ATCGCCGACCTGAAGGAGGGGATGATCCTGCAGGGGGTGGTGACCAACGTCGCCGCCTTCGGCGCCTTCGTGGACATCGG
GGTACACCAGGACGGGCTGGTACACGTAAGCCAGCTCTCGCACCGCTTTACCAAGGACCCCAACGATGCAGTCAAGGTCG
GGGAGATCGTGAAGGTAAAGCTGCTTTCGGCTGATCCGGAGAGAAAGAGGATCTCGCTCTCGATCAAGCAGGCGGAGCCC
GAGAAGGCGCCGAAGAGCGCCGAAGTCAGGAAGCCGCAGCCCAAAGAAAAGCCGGTGAACGAGCAGTCGGCGTGGGAAAA
GGCGGGGTTCAGGGTGAAGAAATAA

Upstream 100 bases:

>100_bases
CCAGCCGTGGCTGGGGTACGGCGCTTTGGGAAAGTTCTTGCCCGAAAGGCCCAAAGAGTGTAAGAAGTACCCTCTTTTTT
TGGGAGGATAACCAGTGGCC

Downstream 100 bases:

>100_bases
GGGCAGGGAAATTTTCTGCCGGGAAAAAGAAAGGGGATGGAACTTCGAGGGCTCCATCCCCTTTTTGTGTATTTGCCGGT
TACTCTAGCAGGCGCTTCTC

Product: S1 RNA-binding domain-containing transcriptional accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 754; Mature: 754

Protein sequence:

>754_residues
MHATDTPQLLEIIVEESGLPRGGVLQTVALLNEGGTVPFIARYRKEQTGELDEVQIRQIEDLLIYHRELSERKVTVLKSI
EEQGKLTPELSARIASCRKKTDLEDLYLPYKPKRRTKATIAREKRLEPLAELIAAQELTTGSPAEAAAPFINAELGVPDA
EAALEGAAHIIAEQLSENADLRGMVRDLTREQGIFGSLLIGEGADKDGKFRMYYDYQEPLKSIPSHRMLAMRRGEKEDVL
RLALLAPEEEIVGRLKGALVKRESIFKGILEAAAADAYKRLIAPSIEVELRLEAKTRADEAAIAVFAQNLKNLLLLPPAG
GRRVLGIDPGLRTGCKLAAISETGRFLEHVTIYPHTGGAKAEAAGAELAGMVQRNDCLLIAIGNGTGGRETEIFVRDALR
KAGIKAETVMVNEAGASIYSASEIAREEFPELDLTVRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDVNQTLLKKALD
AVVESCVNFVGVDLNSASWALLSYVAGLSERQGRAIVRHRDEQGAFASRQSLLKVARFGPKAFEQAAGFLRIRGGENPLD
NTAVHPENYAVVEKMAADLGVSLSQLVADPGLSAGIRIERYVTDTIGIPTLRDILAELKKPGRDPREQFQSASFREDVVT
IADLKEGMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLSHRFTKDPNDAVKVGEIVKVKLLSADPERKRISLSIKQAEP
EKAPKSAEVRKPQPKEKPVNEQSAWEKAGFRVKK

Sequences:

>Translated_754_residues
MHATDTPQLLEIIVEESGLPRGGVLQTVALLNEGGTVPFIARYRKEQTGELDEVQIRQIEDLLIYHRELSERKVTVLKSI
EEQGKLTPELSARIASCRKKTDLEDLYLPYKPKRRTKATIAREKRLEPLAELIAAQELTTGSPAEAAAPFINAELGVPDA
EAALEGAAHIIAEQLSENADLRGMVRDLTREQGIFGSLLIGEGADKDGKFRMYYDYQEPLKSIPSHRMLAMRRGEKEDVL
RLALLAPEEEIVGRLKGALVKRESIFKGILEAAAADAYKRLIAPSIEVELRLEAKTRADEAAIAVFAQNLKNLLLLPPAG
GRRVLGIDPGLRTGCKLAAISETGRFLEHVTIYPHTGGAKAEAAGAELAGMVQRNDCLLIAIGNGTGGRETEIFVRDALR
KAGIKAETVMVNEAGASIYSASEIAREEFPELDLTVRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDVNQTLLKKALD
AVVESCVNFVGVDLNSASWALLSYVAGLSERQGRAIVRHRDEQGAFASRQSLLKVARFGPKAFEQAAGFLRIRGGENPLD
NTAVHPENYAVVEKMAADLGVSLSQLVADPGLSAGIRIERYVTDTIGIPTLRDILAELKKPGRDPREQFQSASFREDVVT
IADLKEGMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLSHRFTKDPNDAVKVGEIVKVKLLSADPERKRISLSIKQAEP
EKAPKSAEVRKPQPKEKPVNEQSAWEKAGFRVKK
>Mature_754_residues
MHATDTPQLLEIIVEESGLPRGGVLQTVALLNEGGTVPFIARYRKEQTGELDEVQIRQIEDLLIYHRELSERKVTVLKSI
EEQGKLTPELSARIASCRKKTDLEDLYLPYKPKRRTKATIAREKRLEPLAELIAAQELTTGSPAEAAAPFINAELGVPDA
EAALEGAAHIIAEQLSENADLRGMVRDLTREQGIFGSLLIGEGADKDGKFRMYYDYQEPLKSIPSHRMLAMRRGEKEDVL
RLALLAPEEEIVGRLKGALVKRESIFKGILEAAAADAYKRLIAPSIEVELRLEAKTRADEAAIAVFAQNLKNLLLLPPAG
GRRVLGIDPGLRTGCKLAAISETGRFLEHVTIYPHTGGAKAEAAGAELAGMVQRNDCLLIAIGNGTGGRETEIFVRDALR
KAGIKAETVMVNEAGASIYSASEIAREEFPELDLTVRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDVNQTLLKKALD
AVVESCVNFVGVDLNSASWALLSYVAGLSERQGRAIVRHRDEQGAFASRQSLLKVARFGPKAFEQAAGFLRIRGGENPLD
NTAVHPENYAVVEKMAADLGVSLSQLVADPGLSAGIRIERYVTDTIGIPTLRDILAELKKPGRDPREQFQSASFREDVVT
IADLKEGMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLSHRFTKDPNDAVKVGEIVKVKLLSADPERKRISLSIKQAEP
EKAPKSAEVRKPQPKEKPVNEQSAWEKAGFRVKK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=788, Percent_Identity=32.1065989847716, Blast_Score=384, Evalue=1e-106,
Organism=Homo sapiens, GI27597090, Length=517, Percent_Identity=23.9845261121857, Blast_Score=86, Evalue=2e-16,
Organism=Escherichia coli, GI87082262, Length=732, Percent_Identity=50, Blast_Score=672, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=77, Percent_Identity=42.8571428571429, Blast_Score=71, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17511129, Length=719, Percent_Identity=29.2072322670376, Blast_Score=231, Evalue=1e-60,
Organism=Caenorhabditis elegans, GI17552892, Length=633, Percent_Identity=24.0126382306477, Blast_Score=86, Evalue=6e-17,
Organism=Saccharomyces cerevisiae, GI6321552, Length=508, Percent_Identity=22.0472440944882, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI62484314, Length=779, Percent_Identity=33.3761232349166, Blast_Score=393, Evalue=1e-109,
Organism=Drosophila melanogaster, GI24640080, Length=536, Percent_Identity=21.8283582089552, Blast_Score=77, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 82305; Mature: 82305

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHATDTPQLLEIIVEESGLPRGGVLQTVALLNEGGTVPFIARYRKEQTGELDEVQIRQIE
CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH
DLLIYHRELSERKVTVLKSIEEQGKLTPELSARIASCRKKTDLEDLYLPYKPKRRTKATI
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHH
AREKRLEPLAELIAAQELTTGSPAEAAAPFINAELGVPDAEAALEGAAHIIAEQLSENAD
HHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
LRGMVRDLTREQGIFGSLLIGEGADKDGKFRMYYDYQEPLKSIPSHRMLAMRRGEKEDVL
HHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECHHHHHHHCCCHHHHHHHCCCHHHHH
RLALLAPEEEIVGRLKGALVKRESIFKGILEAAAADAYKRLIAPSIEVELRLEAKTRADE
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHH
AAIAVFAQNLKNLLLLPPAGGRRVLGIDPGLRTGCKLAAISETGRFLEHVTIYPHTGGAK
HHHHHHHHHHCCEEEECCCCCCEEEECCCCCCCCCEEEEEHHHHHHHHEEEEEECCCCCC
AEAAGAELAGMVQRNDCLLIAIGNGTGGRETEIFVRDALRKAGIKAETVMVNEAGASIYS
CHHCCHHHHHHEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCHHH
ASEIAREEFPELDLTVRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDVNQTLLKKALD
HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
AVVESCVNFVGVDLNSASWALLSYVAGLSERQGRAIVRHRDEQGAFASRQSLLKVARFGP
HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCH
KAFEQAAGFLRIRGGENPLDNTAVHPENYAVVEKMAADLGVSLSQLVADPGLSAGIRIER
HHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEEE
YVTDTIGIPTLRDILAELKKPGRDPREQFQSASFREDVVTIADLKEGMILQGVVTNVAAF
EEHHHCCCCHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
GAFVDIGVHQDGLVHVSQLSHRFTKDPNDAVKVGEIVKVKLLSADPERKRISLSIKQAEP
HHHHEECCCCCCCHHHHHHHHHHCCCCCHHHHHCCEEEEEEECCCCCCCEEEEEEECCCC
EKAPKSAEVRKPQPKEKPVNEQSAWEKAGFRVKK
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MHATDTPQLLEIIVEESGLPRGGVLQTVALLNEGGTVPFIARYRKEQTGELDEVQIRQIE
CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH
DLLIYHRELSERKVTVLKSIEEQGKLTPELSARIASCRKKTDLEDLYLPYKPKRRTKATI
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHH
AREKRLEPLAELIAAQELTTGSPAEAAAPFINAELGVPDAEAALEGAAHIIAEQLSENAD
HHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
LRGMVRDLTREQGIFGSLLIGEGADKDGKFRMYYDYQEPLKSIPSHRMLAMRRGEKEDVL
HHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECHHHHHHHCCCHHHHHHHCCCHHHHH
RLALLAPEEEIVGRLKGALVKRESIFKGILEAAAADAYKRLIAPSIEVELRLEAKTRADE
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHH
AAIAVFAQNLKNLLLLPPAGGRRVLGIDPGLRTGCKLAAISETGRFLEHVTIYPHTGGAK
HHHHHHHHHHCCEEEECCCCCCEEEECCCCCCCCCEEEEEHHHHHHHHEEEEEECCCCCC
AEAAGAELAGMVQRNDCLLIAIGNGTGGRETEIFVRDALRKAGIKAETVMVNEAGASIYS
CHHCCHHHHHHEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCHHH
ASEIAREEFPELDLTVRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDVNQTLLKKALD
HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
AVVESCVNFVGVDLNSASWALLSYVAGLSERQGRAIVRHRDEQGAFASRQSLLKVARFGP
HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCH
KAFEQAAGFLRIRGGENPLDNTAVHPENYAVVEKMAADLGVSLSQLVADPGLSAGIRIER
HHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEEE
YVTDTIGIPTLRDILAELKKPGRDPREQFQSASFREDVVTIADLKEGMILQGVVTNVAAF
EEHHHCCCCHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
GAFVDIGVHQDGLVHVSQLSHRFTKDPNDAVKVGEIVKVKLLSADPERKRISLSIKQAEP
HHHHEECCCCCCCHHHHHHHHHHCCCCCHHHHHCCEEEEEEECCCCCCCEEEEEEECCCC
EKAPKSAEVRKPQPKEKPVNEQSAWEKAGFRVKK
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]