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The map label for this gene is recO [H]

Identifier: 197119173

GI number: 197119173

Start: 3229089

End: 3229742

Strand: Direct

Name: recO [H]

Synonym: Gbem_2800

Alternate gene names: 197119173

Gene position: 3229089-3229742 (Clockwise)

Preceding gene: 197119172

Following gene: 197119174

Centisome position: 69.97

GC content: 65.29

Gene sequence:

>654_bases
ATGTACCTTCGACCGATGCGAAAAACCGAGGCAGAGGCCATAGTGCTCCGCTTCACCGACTTCGGTGAGGCCGACCGGAT
CGTCACCTTCTTCACCCTGGAACAGGGGAAGCTGCAAGGGGTGGCGCGCGGGGCCAAGCGCAGCAAGAAGCGCTTCGCCG
GAGCCTTGGAGCAGTTCGCGCACCTGAAGCTCCAGCTGCAGCAGGGAAACAGCCTCGCCACCCTCTCCTCAGCCGACATC
GTCAGCATCTTCCCCGGAATCCGCGGGGACCTCGTCAAGATCGGATGCGCCGCCTATGCCTGCGAACTGGTGGAGCGGCT
CACCCCCGACGAGGAGCCCGCCCCCCGCCTGTTCCGCCTCTTGTACTGCTACCTGGAAAGGCTGAACGAGGCCCCCCCCT
CCCCTTCGGACCGCCGCTTCTTCGCCGTCAATCTCCTCAAGATCCTGGGCTACCAGCCCGACCTGCAGGTGAGGGGAATC
TCCGAACAGACCGCCCGCCTACTTGCGCTCGCCATGCAGACCGGGCGCTTCGGCGCCATATCCTTCCCCGAGCCGGAGCT
TCGGGAAGCGGACCTCCTTTTGAACCCCGCCATCGACCTGCACCTGGACCGGGAACTCAGGTCCCTCGCCTTCCTCAAGG
AGGTCGGCGGGTAG

Upstream 100 bases:

>100_bases
CCCGCTGAACCGGTACCTGGGCCTATTGCTGCACCGGATGAACCTCAAGTAGGGGCTCTCTCCCCCACCCTCCTCACCGC
TTGACTTGATCCGGCGGCCG

Downstream 100 bases:

>100_bases
CCGAACCCCTCCAAATTTGTTGACCGGCGCGACGGATGAAGGTACTATCCGACGGCTGTACCGTAACTCCCGACTGCCGT
CGGGGCTTGCGGTACAGGTT

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MYLRPMRKTEAEAIVLRFTDFGEADRIVTFFTLEQGKLQGVARGAKRSKKRFAGALEQFAHLKLQLQQGNSLATLSSADI
VSIFPGIRGDLVKIGCAAYACELVERLTPDEEPAPRLFRLLYCYLERLNEAPPSPSDRRFFAVNLLKILGYQPDLQVRGI
SEQTARLLALAMQTGRFGAISFPEPELREADLLLNPAIDLHLDRELRSLAFLKEVGG

Sequences:

>Translated_217_residues
MYLRPMRKTEAEAIVLRFTDFGEADRIVTFFTLEQGKLQGVARGAKRSKKRFAGALEQFAHLKLQLQQGNSLATLSSADI
VSIFPGIRGDLVKIGCAAYACELVERLTPDEEPAPRLFRLLYCYLERLNEAPPSPSDRRFFAVNLLKILGYQPDLQVRGI
SEQTARLLALAMQTGRFGAISFPEPELREADLLLNPAIDLHLDRELRSLAFLKEVGG
>Mature_217_residues
MYLRPMRKTEAEAIVLRFTDFGEADRIVTFFTLEQGKLQGVARGAKRSKKRFAGALEQFAHLKLQLQQGNSLATLSSADI
VSIFPGIRGDLVKIGCAAYACELVERLTPDEEPAPRLFRLLYCYLERLNEAPPSPSDRRFFAVNLLKILGYQPDLQVRGI
SEQTARLLALAMQTGRFGAISFPEPELREADLLLNPAIDLHLDRELRSLAFLKEVGG

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 24293; Mature: 24293

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLRPMRKTEAEAIVLRFTDFGEADRIVTFFTLEQGKLQGVARGAKRSKKRFAGALEQFA
CCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
HLKLQLQQGNSLATLSSADIVSIFPGIRGDLVKIGCAAYACELVERLTPDEEPAPRLFRL
HHEEEEECCCCEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LYCYLERLNEAPPSPSDRRFFAVNLLKILGYQPDLQVRGISEQTARLLALAMQTGRFGAI
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHCCCCCCC
SFPEPELREADLLLNPAIDLHLDRELRSLAFLKEVGG
CCCCCCCCCCCEEECCCHHEEEHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYLRPMRKTEAEAIVLRFTDFGEADRIVTFFTLEQGKLQGVARGAKRSKKRFAGALEQFA
CCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
HLKLQLQQGNSLATLSSADIVSIFPGIRGDLVKIGCAAYACELVERLTPDEEPAPRLFRL
HHEEEEECCCCEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LYCYLERLNEAPPSPSDRRFFAVNLLKILGYQPDLQVRGISEQTARLLALAMQTGRFGAI
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHCCCCCCC
SFPEPELREADLLLNPAIDLHLDRELRSLAFLKEVGG
CCCCCCCCCCCEEECCCHHEEEHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA