| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119135
Identifier: 197119135
GI number: 197119135
Start: 3191106
End: 3192050
Strand: Reverse
Name: 197119135
Synonym: Gbem_2762
Alternate gene names: NA
Gene position: 3192050-3191106 (Counterclockwise)
Preceding gene: 197119136
Following gene: 197119134
Centisome position: 69.16
GC content: 60.0
Gene sequence:
>945_bases GTGTCGCTTAAGGTGAACCCAGTACAGGGGCAGATTCTTGATGTAGTGAAGGGGAGCGTCGCCACGGTGACGCTCTTCCT TGCTTTCGTCTACTTCCCCGTGCTCGGCATGATCCCGGGCTTTTTCGCGCCGCTCCCCGGCGCTTACTACGCCCTGAAGA ACGACAGGAAGATCGGGCTTTTGGTGCTGCTGACCTCGTCGGCGCTGCTCCTCGGCCTGGCGGATTCAACGCTCCTGCTG GTCTACCTGCTGCAGGCAGGCGTTCTCTCCCTGGCGCTTCCCGAGTTTTTGCTCCGGTTGAAAGGGGGCGCCCGATCGAT CGTCTACTCGGTCGCCATCAACCTGCTGGTCATGCTCGTTGCCGCCCTGCTCTACAGCTGGGACACCGGGGCCGATCTGC ACGCCAAGGTGACCAAGGGGGTGCAGTCGAGCATCACCCAGACCGCTTTGCTCTATGAGAAGGCGGGGGTCAAGGGGGAC GAACTCAAGGCGATGCAGGAGTCGATGCAGCAGGCGGGCGAACTGGTCATCACCATCTACCCCGCGCTCGTCACCGTGTC GCTTGGACTTGTGGCCTGCATGAACCTCTTGGTTCTAGCCAGGGTCGCCAACCGGGTCCGGATGCCGCTCTACGTTGGAG ATTTCAAGAAGTACCGCAATCCCGAGCCGCTGGTATGGCTTTTGATTGCCTCGGGGTTCGGTATGCTGGCGCCGAGCACC CCTGTTTACCTGGCCTCGCTGAACGTGCTGATCGTGGTTGCCGCCCTTTACTCAGTTCAGGGTTTCGCCGTCATCAGCCA CTACTTCTGCAAGCTCCAGGTTCCGAAGTTCATCAGGCTTTTGTCCGCCCTGTTCCTGATCATCCAGCCCTTCATGGTGC TGGCGGTCGCGGTGCTGGGTGTTTTCGACCTCTGGGGAGATTTCAGATCCCCCAAAAAACAGTAA
Upstream 100 bases:
>100_bases CCGGTAACTGCTCCAAGCACCAGAGGGAAATCACCGAAGCGATCAAAAGGGCAAGGAACATAGCCCTGCTTCCGATCGCC GGCAGCCACGCTACCGCCTA
Downstream 100 bases:
>100_bases AACCTGTAAATAACCAGGCTAGGAGGCAACATGAAGGTAATTCTCAAAGAAAACGTAGACAATCTCGGCCACATCGGCGA CATCGTAAAGGTAGCACCGG
Product: membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 314; Mature: 313
Protein sequence:
>314_residues MSLKVNPVQGQILDVVKGSVATVTLFLAFVYFPVLGMIPGFFAPLPGAYYALKNDRKIGLLVLLTSSALLLGLADSTLLL VYLLQAGVLSLALPEFLLRLKGGARSIVYSVAINLLVMLVAALLYSWDTGADLHAKVTKGVQSSITQTALLYEKAGVKGD ELKAMQESMQQAGELVITIYPALVTVSLGLVACMNLLVLARVANRVRMPLYVGDFKKYRNPEPLVWLLIASGFGMLAPST PVYLASLNVLIVVAALYSVQGFAVISHYFCKLQVPKFIRLLSALFLIIQPFMVLAVAVLGVFDLWGDFRSPKKQ
Sequences:
>Translated_314_residues MSLKVNPVQGQILDVVKGSVATVTLFLAFVYFPVLGMIPGFFAPLPGAYYALKNDRKIGLLVLLTSSALLLGLADSTLLL VYLLQAGVLSLALPEFLLRLKGGARSIVYSVAINLLVMLVAALLYSWDTGADLHAKVTKGVQSSITQTALLYEKAGVKGD ELKAMQESMQQAGELVITIYPALVTVSLGLVACMNLLVLARVANRVRMPLYVGDFKKYRNPEPLVWLLIASGFGMLAPST PVYLASLNVLIVVAALYSVQGFAVISHYFCKLQVPKFIRLLSALFLIIQPFMVLAVAVLGVFDLWGDFRSPKKQ >Mature_313_residues SLKVNPVQGQILDVVKGSVATVTLFLAFVYFPVLGMIPGFFAPLPGAYYALKNDRKIGLLVLLTSSALLLGLADSTLLLV YLLQAGVLSLALPEFLLRLKGGARSIVYSVAINLLVMLVAALLYSWDTGADLHAKVTKGVQSSITQTALLYEKAGVKGDE LKAMQESMQQAGELVITIYPALVTVSLGLVACMNLLVLARVANRVRMPLYVGDFKKYRNPEPLVWLLIASGFGMLAPSTP VYLASLNVLIVVAALYSVQGFAVISHYFCKLQVPKFIRLLSALFLIIQPFMVLAVAVLGVFDLWGDFRSPKKQ
Specific function: Unknown
COG id: COG4241
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34038; Mature: 33907
Theoretical pI: Translated: 9.93; Mature: 9.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLKVNPVQGQILDVVKGSVATVTLFLAFVYFPVLGMIPGFFAPLPGAYYALKNDRKIGL CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEE LVLLTSSALLLGLADSTLLLVYLLQAGVLSLALPEFLLRLKGGARSIVYSVAINLLVMLV EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH AALLYSWDTGADLHAKVTKGVQSSITQTALLYEKAGVKGDELKAMQESMQQAGELVITIY HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEHH PALVTVSLGLVACMNLLVLARVANRVRMPLYVGDFKKYRNPEPLVWLLIASGFGMLAPST HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHCCCCCCEEEEEECCCCCCCCCCC PVYLASLNVLIVVAALYSVQGFAVISHYFCKLQVPKFIRLLSALFLIIQPFMVLAVAVLG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VFDLWGDFRSPKKQ HHHHHHHCCCCCCC >Mature Secondary Structure SLKVNPVQGQILDVVKGSVATVTLFLAFVYFPVLGMIPGFFAPLPGAYYALKNDRKIGL CCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEE LVLLTSSALLLGLADSTLLLVYLLQAGVLSLALPEFLLRLKGGARSIVYSVAINLLVMLV EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH AALLYSWDTGADLHAKVTKGVQSSITQTALLYEKAGVKGDELKAMQESMQQAGELVITIY HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEHH PALVTVSLGLVACMNLLVLARVANRVRMPLYVGDFKKYRNPEPLVWLLIASGFGMLAPST HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHCCCCCCEEEEEECCCCCCCCCCC PVYLASLNVLIVVAALYSVQGFAVISHYFCKLQVPKFIRLLSALFLIIQPFMVLAVAVLG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VFDLWGDFRSPKKQ HHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA