| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is oprF [H]
Identifier: 197119091
GI number: 197119091
Start: 3137981
End: 3143983
Strand: Reverse
Name: oprF [H]
Synonym: Gbem_2718
Alternate gene names: 197119091
Gene position: 3143983-3137981 (Counterclockwise)
Preceding gene: 197119092
Following gene: 197119090
Centisome position: 68.12
GC content: 66.47
Gene sequence:
>6003_bases ATGGCGATCGCTGCAGGCAAGAAGAGGAGGAGGTGGGGGGGGCTGCGCCTGATCGCGCTCGCGCTCCTGCTTGCCCTTCC CGGTACTGCATTTTCGCTCACCCCGGCAGGGACCGTCATCAGGCACGATTTCTCAGCACGCTTCGCCACCCCAGGTCTTC GGGAAGTCCGCTCCAACGAGACCCAAGTGAGCGTGAAGGACCTTTCCGACCCGGCGCTGGTTCCCCCGCGTACCGCCACC ACCAACGCCAACGTTCCTGTCGATTTCCGTCACACCCTCACCAACCGGGGGAACTTCCCCGACAGTTTCAGGTTGAAAGC CGCGGCGGTCGACGCGGCGCTGCCGGAGAACGGGCAGGCGCCGCTGCTCCGCTTTTACGCCGCTGACGGCGTGACCCCGT TTCCCCACGATGCCGGCGGCTTGCAGGTGGTAGGCCCCCTTGAACCCGGCGCTTCCGTCGAGCTGGTATTGAGGGCAACG CCGCCGGCCGGAAGCGAGGGACGGGTGGCGTTGATCGCGGTCAGCGCCACCTCCGTGCTGGTGCCGGCGCGAAGCGCGAG CCTGACCAACCAGCTACAGGTGCCGGCCGGAGGTGTTTCCTTCTTCAAGGCCGTTTCACCGGTGGGGAGCGTACTTCCCG GGACCGTCCTGACCTACAGCATCTCGCTTGGGAACAGCGGGGGAACGCCCGTGGCCGGTGTGCGGGTGGTCGACCCTTTG GATCCCCTTCTCGAATACCAGCCGGGAAGTGCGGCGCTTCCTGCCGGAGTTCCCGGAACCGTCAGTTTCGACGCCGCAAC CCGGACGCTCGTCTTCGACATATCGTCGCTCCCCGCCGGATTCAGCGGGGAAATCACCTTCCAGGCCCGCGTACGCGATG ACGCCCCGGGAAATGCCTCCATTGTCAACACCGCCGGCGTCTCCACTGCGGGAAATGCGGCACCCTTCCTCAGCAACAGC ACCCTCAACACCGTGCTGGTCAGATTGCTCCAGGTAACCAAGACTGCGGGAAGCAGCTCAGCTGAGGCCGGCGACATAGT GTCATACGCGGTGCGGGTGCAGAACATCGGCGACGGCGTCTTGGACCATGTGACGGTAGCCGACCGTATTCCCCGCGGCT TCCGCTATCTGAAGGGGTCGAGCCACGTGGACGGGTTCGCCGTGGCGGACCCGGTGGGAGGGGGGCAGCAGTTGAGTTGG GACTTGGGGAGTTTCGAGCACGGAGCCTTCAAGGTGCTCAACTACCGGTTGGTCGTTTCCGCCGACGCCCCCGTCGGGAC CGCCGTCAACTGGGCCCGGGCCACCGGAACCCCTGCCAGCGGCGGCAGCGTCGTCTCCCCTCCCGCCAGTGCCGCCGTTA AGGTAAGGGGCTCCGTACTCGGGAGCAAGGCCATCATCATGGGGAGGGTCTTCCATGACGGCAACGGGAACGGCGTGCCG GACCGAGGGGAGCGGGGCGAGGCCGGGGTGCGGGTTTACCTGGAAGACGGTTCCTTCGTCTTCACCGACGTCGAAGGGCA GTACAGTTTCACCGGGGTTTCCGCGGGCGACCACGTCGTGAAGCTTGACCGGTCCACCCTCAACCCGGGTTTTGTGTCCG TGCCGTACAACACTGCCTTTGCCGGGGTGGGGTGTTCGCAGTTCATCACCGTACCCTTCGGCGGTCCGGCGCGCGGCGAC TTCGCGCTCGCCGCGAACCCGGCAGGTCCGGCAGGTCCGACAGGTCCGACAGGTCCGACAGGTCCGACAGGTCCGACAGG TCCGACAGGTCCGACAGGTCCGACAAGTCCGACAAGTCCGACAAGTCCGACAAGTCCGACAAGTCCGACAAGTCCGACGC AGTCGGCGCCTCCGGCTACCGAACCGGCTGCCGCGTCCCGGCTTCGGCTCACCCCCGACCGCGTCGAGCTTCCGGCGGAC GCCAAAACCTCCGTCCCCTTCAAGGTCGAACTCCTCGACTCCGCCGGCAGGCGGGTCCCCGGTTCGACAACCGTCACCCT CTTCCTCGCCAAGGGAACCATCTTGGAGTCGGACCTGGACCCGGCCCTCCCGGGCCACCAGGTCCGCATCACCGACGGCC TGGGCGTCTTCCAGGTGCGCTCCGGCCGCGCCACCGGGGACGACCTCCTCATCGCCAAAGACGGCGACGGCAGCGCCGCC CAGGCGGCCCTCTTCTTCAGTCCGGACCGGCGCGACTGGATCCTGGTCGGCTTAGGCTCCCTCACCGTGGGTGGAAAGGC GGTGAGCGGCAACCTGGAAAAGATCGACAAGGACGACCGCTTCGACGAGGGTATCTTCCACGAGGAACGGCTCGCCTTCT TCACCCGCGGGAAGATCCTCGGCAAGTACCTCCTGACCGCCGCCTACGATTCGGACAAGGAACGCCGCGACGGCGTGTTC CAGGCCATCGACCCGGAGAAGTACTACCCGGTCTACGGCGACGCCACCGACATAGGGTACGAGGCGGAGTCGCGCGGCAA GATCTACCTCAAGCTGGAAAGCGGCCGCTCCTACCTCATGGCCGGCGACTACCGCACCGACCTCTCCGAAAACGAATTCT CCCGCTACGACAGGGCGCTCAACGGCGCCAAATTCGAGGTCAACACCAAGTCGGTTACCGTCAAAGGGTTCGAAAGCCGC ACCGAGGAAACGGTGACCCGGGACGATATCCCCGGCAACGGCACCTCCGGCCACTACTTCCTCTCCAGGCGGGACGTCTT CGAGAACAGCGAACGGGTGCGCATCGAGGTGCGCGACCGCTACCACACCGAACGGGTCATCGCCGTAACCGAGAAGGTCC GCTACGCCGACTATTCCATCGATTACCAGGCCGGGACCATCCTCTTCAAGGAGCCGGTCCCCTCCCTGGACCAATTCCTG AACCCGGTCACCATCGTGGTCAACTACCAGGCCACAGGCCCCGGGGAGGAGCGCTACGTCTACGGCGGACGCGCCGAGAT CCGGTCCGAAAACGGCTCGCATATCGGGGGCACCGCCGTGGTGGAGGAGCAGGCGCGGCAGGACAACACCCTCTTCGGCC TGGACGCCGCTTGGCGCCTGGGCGAGCGCCTGACCCTGAAGGGGGAGGGGGCGGTCAGCGAGAACCTGGAGCATGGCAGG GGAAGCGCCTGGAAAACGGAGCTCGCCGCGCGTCCCGTCGATCCCCTCCTTCTGAACCTTTACTACCGGAAGGTGGAGTC CGACTTCTTCAACACCTCGATGACCGGGACGGAGCTTGGGACCGAGAAGTACGGCGGCCGGGCCGACTACCGTGTCGGCG CCGACACCCTCGTCTTCGCCGAGAGCTTCCTGCACCGCTTTGAATTGGGGGACCGGAAACTCTTCGCGAACCACGCGGGG ATGGTGAAGAAATTCTCCCTGCTGCATTTGGAGGGGGGCGTCAAGGTGGTGCGGGAGGAGCGGGACGGACGGACCGAGGA ATCGGACCTGGTCTATGCCGGCGTCTTCGCGCCCCTCACCAAAAAGCTCGATGCGACCCTCAGGCGCGAGCAGCTTCTAT CCGCCTCCGGCGTCGCCGACTACCAGACAAAGACCTTCGCCAAGCTCGACTACCGGCTCACTGAGCGCACCAAGGCCTTC CTCACCGAGGAGTACCAAGAGGGCTCCCCCCTCATCCGCCAGGCCACCCTGTTCGGCCTGGAGAGCAGGCTCTCGGACCG GATGCGGCTCACCACCGGCTACCAGATGTCCTCCGGCGCCTCCGGTTACTCCCAGCAGAGCAACGTCGACCTCAACACGC GGCTCATGGAGCGGGAAGGGTTCAGCCTCGATTCCAGAACCGGCTACCAGATCGAGCACGCCCTGTCGCAGCAAAGGGGG CAGGCCATCGTCGGGCTGAACAGCCGTTACCGCGCCGCCGAGGGGCTCTACCTCAACTCCTCCCTGGAGCGGGTGCAGAC GGTGCAGGGAAATACCGGCACCCGCACCGCCTTTACCTTGGGGGGCGAATACCTCCGGGCCAGGGATCTGAAGCTCTCCG GCCGCTACGAGGTGAGGACCGGCCCGGGGGAGACCGCCTCTCTCTACGGCGCCAACGCCGCCTACAAGATGAGCCCCTCG CTCACCCTCTTGGGGAAGCTCTCGCTCTGGGATCGGGACGCCGACGCCGGCGACGACGTCATCTTCGACGGCTACCTGGG GAGCGCCTTCCGTCCGCTGGCGGGCCAGCCGCTGCAGCTCCTCACCCTGGCGCGCTACAAGGTCGAGGACAGACGCTCGC TCCCCGGCTCCTTCGAAAGCCGCAGCGTCATCCTCTCGGCCGAGCCGACCTACAGGATCGTGAGCCGTTGGAGCGCCCAG GGAAAATACGCCGGGAAGCTCAGCTGGGCCGACGGGGTGGGGGGGATGATGCAGAGCTACACCGACCTGGTCCTGGCCGG GCTCTCCTACGACCTGGCGGAGCGCTGGGAGATCGCGGCCTACCTGAAGCTCATGAACCAGTACGACGCCCGCATGCACT CGCTGGGTGCGGTGGGAAGCGCCGGCTACCGCGTCTATAGAAACGTGGTCCTTTCCGCCGGCTACAACTTCGCCAGGCTC GACGACCGGGACTTGACCGGCGAGACCTTCCAGGGGCAGGGCCCCTTTGTCGGCATCAAGGTCAAGTTCGATGAGGACAT GTTCGAGTCGCGGCAGGCGAAGGTGATCCCCATCCCGGTTCCGCCCCCCGCCCAGGTCGCCAAGGTTCCCCCCCCCGCGG CTCTAGTGCCGGCGCTCCTGGTTCGGGCGGAGCGGCTGGACGAGCCGCTGCTTCTCTCCGGGAGCGCGGAACTATTCACC CTCCTGGTCAACGGCGAACGGGCGAAGCTTCCTTCCACCGAGGTGACGCTGACCCGGGAGCACCTGGGTTCCCTGGAGCT CAAGGGGGGAAGGTTCCCTGCGCCGCTGGTCTTCCTGGTGAGCGTGGAGCAGCCGGAACAGGTCGGTTCCTGGACGCTCA AGGTGATGAATCGCGAGGGGGAGGCGCTGCGCACGCTTGAGGGGACCGGGGCGCCGGCAAAGCGCATCCCCTGGCTTGGC GACACGGACCGCCGGAAGGTGGAACAGGGCGAGATCTATCAGTACCAACTGCAGGTCACCTACCTGGACGGCTCGATCTT CAGCACCGGCCGCGAACTCTTCGGCGTCAACCGTCGCGAGGCGGTACTCCTCACCCTGTCCGGCGGCGCTTTCGTCTTCG ACCGCTCCGAGCTGACCCTGGAGGCCAAGCACCTGCTCAAAGGGGCGGCGCGGGTCTTGCGGGCGCGCCCGCAGGAAAAG GTGATCGTGGAGGGGCATACCGACGGCATCGGGAGCGTGGAATACAACATGGCGCTCTCCCAGAGACGGTGCGACGCCGC CGCCGACTACCTGGTACGGGAGGAAGGGATAGCCGGCTCGCGGCTGTTGCGGCGCTGGTACGGAAAATCCCGCCCCGTGG CCGACAACGTCACCACCCCCGGCAGGAGGCTAAACCGCCGCGTCGAGCTGAAGGGGGATTTCAAAGAGCTGCATCCGGTC TCTCCCGATGACCGGTACCGGACGAAATCCTTCGTGGTGATCAACGGCCGCAGCATCCCGGTGGATCCCCTGGGTCGCTT CGACACCACCTTCCCGGGCAACACCCTCGATCTCGACCTGGAGATGGGGGACTCGCAGGGGCGTTTCCTCGCCACTTCGC TCCCGCTTCCCGACCTGGCCGTGACCGGGCCGCCGGCCGAGACGCTGGTCGGCTACGGCACCGAAGCCTCCGGCGTCAGG GTCGATGCCGACGGCAAGGGGCACTGCATGCTTTCGGGAACGGTCGAGGGGACCTCCATGGAGCTCGCGGGGAGGAAGGT GCCGCTCGACGAGGCAGGGCGCTTCACCCTCGATCTCCCGCTTGCCGAGGGGGACCAGGTCCTGGGCGTGGTGCTCAGAA ACGGCTCCGGCTGCTCTAAGCTCATGAACCTGCGGCTCCGTTCGGAGCGCCAAACCATGCCTGCCGCGCGGGGTGAGCGG TGA
Upstream 100 bases:
>100_bases GGGCGCTAGCGAGACAATCGGCGGCTCCCTGCCGCCGGGGAAGACGGTTTATCTTTTTTTCAAAGCACAGGTCGAATGAC GATGTGAACTGGGGCAACGC
Downstream 100 bases:
>100_bases GCGCCCGGGACCGCTTCAGTAAGCTCGGGGGGATTGCCCTGGAGACGGTGGGGTCGCTGCTACTGGTCCTCGCGTTCTAC TGGCTGTTCATGGTCTTTCT
Product: OmpA family outer membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 2000; Mature: 1999
Protein sequence:
>2000_residues MAIAAGKKRRRWGGLRLIALALLLALPGTAFSLTPAGTVIRHDFSARFATPGLREVRSNETQVSVKDLSDPALVPPRTAT TNANVPVDFRHTLTNRGNFPDSFRLKAAAVDAALPENGQAPLLRFYAADGVTPFPHDAGGLQVVGPLEPGASVELVLRAT PPAGSEGRVALIAVSATSVLVPARSASLTNQLQVPAGGVSFFKAVSPVGSVLPGTVLTYSISLGNSGGTPVAGVRVVDPL DPLLEYQPGSAALPAGVPGTVSFDAATRTLVFDISSLPAGFSGEITFQARVRDDAPGNASIVNTAGVSTAGNAAPFLSNS TLNTVLVRLLQVTKTAGSSSAEAGDIVSYAVRVQNIGDGVLDHVTVADRIPRGFRYLKGSSHVDGFAVADPVGGGQQLSW DLGSFEHGAFKVLNYRLVVSADAPVGTAVNWARATGTPASGGSVVSPPASAAVKVRGSVLGSKAIIMGRVFHDGNGNGVP DRGERGEAGVRVYLEDGSFVFTDVEGQYSFTGVSAGDHVVKLDRSTLNPGFVSVPYNTAFAGVGCSQFITVPFGGPARGD FALAANPAGPAGPTGPTGPTGPTGPTGPTGPTGPTSPTSPTSPTSPTSPTSPTQSAPPATEPAAASRLRLTPDRVELPAD AKTSVPFKVELLDSAGRRVPGSTTVTLFLAKGTILESDLDPALPGHQVRITDGLGVFQVRSGRATGDDLLIAKDGDGSAA QAALFFSPDRRDWILVGLGSLTVGGKAVSGNLEKIDKDDRFDEGIFHEERLAFFTRGKILGKYLLTAAYDSDKERRDGVF QAIDPEKYYPVYGDATDIGYEAESRGKIYLKLESGRSYLMAGDYRTDLSENEFSRYDRALNGAKFEVNTKSVTVKGFESR TEETVTRDDIPGNGTSGHYFLSRRDVFENSERVRIEVRDRYHTERVIAVTEKVRYADYSIDYQAGTILFKEPVPSLDQFL NPVTIVVNYQATGPGEERYVYGGRAEIRSENGSHIGGTAVVEEQARQDNTLFGLDAAWRLGERLTLKGEGAVSENLEHGR GSAWKTELAARPVDPLLLNLYYRKVESDFFNTSMTGTELGTEKYGGRADYRVGADTLVFAESFLHRFELGDRKLFANHAG MVKKFSLLHLEGGVKVVREERDGRTEESDLVYAGVFAPLTKKLDATLRREQLLSASGVADYQTKTFAKLDYRLTERTKAF LTEEYQEGSPLIRQATLFGLESRLSDRMRLTTGYQMSSGASGYSQQSNVDLNTRLMEREGFSLDSRTGYQIEHALSQQRG QAIVGLNSRYRAAEGLYLNSSLERVQTVQGNTGTRTAFTLGGEYLRARDLKLSGRYEVRTGPGETASLYGANAAYKMSPS LTLLGKLSLWDRDADAGDDVIFDGYLGSAFRPLAGQPLQLLTLARYKVEDRRSLPGSFESRSVILSAEPTYRIVSRWSAQ GKYAGKLSWADGVGGMMQSYTDLVLAGLSYDLAERWEIAAYLKLMNQYDARMHSLGAVGSAGYRVYRNVVLSAGYNFARL DDRDLTGETFQGQGPFVGIKVKFDEDMFESRQAKVIPIPVPPPAQVAKVPPPAALVPALLVRAERLDEPLLLSGSAELFT LLVNGERAKLPSTEVTLTREHLGSLELKGGRFPAPLVFLVSVEQPEQVGSWTLKVMNREGEALRTLEGTGAPAKRIPWLG DTDRRKVEQGEIYQYQLQVTYLDGSIFSTGRELFGVNRREAVLLTLSGGAFVFDRSELTLEAKHLLKGAARVLRARPQEK VIVEGHTDGIGSVEYNMALSQRRCDAAADYLVREEGIAGSRLLRRWYGKSRPVADNVTTPGRRLNRRVELKGDFKELHPV SPDDRYRTKSFVVINGRSIPVDPLGRFDTTFPGNTLDLDLEMGDSQGRFLATSLPLPDLAVTGPPAETLVGYGTEASGVR VDADGKGHCMLSGTVEGTSMELAGRKVPLDEAGRFTLDLPLAEGDQVLGVVLRNGSGCSKLMNLRLRSERQTMPAARGER
Sequences:
>Translated_2000_residues MAIAAGKKRRRWGGLRLIALALLLALPGTAFSLTPAGTVIRHDFSARFATPGLREVRSNETQVSVKDLSDPALVPPRTAT TNANVPVDFRHTLTNRGNFPDSFRLKAAAVDAALPENGQAPLLRFYAADGVTPFPHDAGGLQVVGPLEPGASVELVLRAT PPAGSEGRVALIAVSATSVLVPARSASLTNQLQVPAGGVSFFKAVSPVGSVLPGTVLTYSISLGNSGGTPVAGVRVVDPL DPLLEYQPGSAALPAGVPGTVSFDAATRTLVFDISSLPAGFSGEITFQARVRDDAPGNASIVNTAGVSTAGNAAPFLSNS TLNTVLVRLLQVTKTAGSSSAEAGDIVSYAVRVQNIGDGVLDHVTVADRIPRGFRYLKGSSHVDGFAVADPVGGGQQLSW DLGSFEHGAFKVLNYRLVVSADAPVGTAVNWARATGTPASGGSVVSPPASAAVKVRGSVLGSKAIIMGRVFHDGNGNGVP DRGERGEAGVRVYLEDGSFVFTDVEGQYSFTGVSAGDHVVKLDRSTLNPGFVSVPYNTAFAGVGCSQFITVPFGGPARGD FALAANPAGPAGPTGPTGPTGPTGPTGPTGPTGPTSPTSPTSPTSPTSPTSPTQSAPPATEPAAASRLRLTPDRVELPAD AKTSVPFKVELLDSAGRRVPGSTTVTLFLAKGTILESDLDPALPGHQVRITDGLGVFQVRSGRATGDDLLIAKDGDGSAA QAALFFSPDRRDWILVGLGSLTVGGKAVSGNLEKIDKDDRFDEGIFHEERLAFFTRGKILGKYLLTAAYDSDKERRDGVF QAIDPEKYYPVYGDATDIGYEAESRGKIYLKLESGRSYLMAGDYRTDLSENEFSRYDRALNGAKFEVNTKSVTVKGFESR TEETVTRDDIPGNGTSGHYFLSRRDVFENSERVRIEVRDRYHTERVIAVTEKVRYADYSIDYQAGTILFKEPVPSLDQFL NPVTIVVNYQATGPGEERYVYGGRAEIRSENGSHIGGTAVVEEQARQDNTLFGLDAAWRLGERLTLKGEGAVSENLEHGR GSAWKTELAARPVDPLLLNLYYRKVESDFFNTSMTGTELGTEKYGGRADYRVGADTLVFAESFLHRFELGDRKLFANHAG MVKKFSLLHLEGGVKVVREERDGRTEESDLVYAGVFAPLTKKLDATLRREQLLSASGVADYQTKTFAKLDYRLTERTKAF LTEEYQEGSPLIRQATLFGLESRLSDRMRLTTGYQMSSGASGYSQQSNVDLNTRLMEREGFSLDSRTGYQIEHALSQQRG QAIVGLNSRYRAAEGLYLNSSLERVQTVQGNTGTRTAFTLGGEYLRARDLKLSGRYEVRTGPGETASLYGANAAYKMSPS LTLLGKLSLWDRDADAGDDVIFDGYLGSAFRPLAGQPLQLLTLARYKVEDRRSLPGSFESRSVILSAEPTYRIVSRWSAQ GKYAGKLSWADGVGGMMQSYTDLVLAGLSYDLAERWEIAAYLKLMNQYDARMHSLGAVGSAGYRVYRNVVLSAGYNFARL DDRDLTGETFQGQGPFVGIKVKFDEDMFESRQAKVIPIPVPPPAQVAKVPPPAALVPALLVRAERLDEPLLLSGSAELFT LLVNGERAKLPSTEVTLTREHLGSLELKGGRFPAPLVFLVSVEQPEQVGSWTLKVMNREGEALRTLEGTGAPAKRIPWLG DTDRRKVEQGEIYQYQLQVTYLDGSIFSTGRELFGVNRREAVLLTLSGGAFVFDRSELTLEAKHLLKGAARVLRARPQEK VIVEGHTDGIGSVEYNMALSQRRCDAAADYLVREEGIAGSRLLRRWYGKSRPVADNVTTPGRRLNRRVELKGDFKELHPV SPDDRYRTKSFVVINGRSIPVDPLGRFDTTFPGNTLDLDLEMGDSQGRFLATSLPLPDLAVTGPPAETLVGYGTEASGVR VDADGKGHCMLSGTVEGTSMELAGRKVPLDEAGRFTLDLPLAEGDQVLGVVLRNGSGCSKLMNLRLRSERQTMPAARGER >Mature_1999_residues AIAAGKKRRRWGGLRLIALALLLALPGTAFSLTPAGTVIRHDFSARFATPGLREVRSNETQVSVKDLSDPALVPPRTATT NANVPVDFRHTLTNRGNFPDSFRLKAAAVDAALPENGQAPLLRFYAADGVTPFPHDAGGLQVVGPLEPGASVELVLRATP PAGSEGRVALIAVSATSVLVPARSASLTNQLQVPAGGVSFFKAVSPVGSVLPGTVLTYSISLGNSGGTPVAGVRVVDPLD PLLEYQPGSAALPAGVPGTVSFDAATRTLVFDISSLPAGFSGEITFQARVRDDAPGNASIVNTAGVSTAGNAAPFLSNST LNTVLVRLLQVTKTAGSSSAEAGDIVSYAVRVQNIGDGVLDHVTVADRIPRGFRYLKGSSHVDGFAVADPVGGGQQLSWD LGSFEHGAFKVLNYRLVVSADAPVGTAVNWARATGTPASGGSVVSPPASAAVKVRGSVLGSKAIIMGRVFHDGNGNGVPD RGERGEAGVRVYLEDGSFVFTDVEGQYSFTGVSAGDHVVKLDRSTLNPGFVSVPYNTAFAGVGCSQFITVPFGGPARGDF ALAANPAGPAGPTGPTGPTGPTGPTGPTGPTGPTSPTSPTSPTSPTSPTSPTQSAPPATEPAAASRLRLTPDRVELPADA KTSVPFKVELLDSAGRRVPGSTTVTLFLAKGTILESDLDPALPGHQVRITDGLGVFQVRSGRATGDDLLIAKDGDGSAAQ AALFFSPDRRDWILVGLGSLTVGGKAVSGNLEKIDKDDRFDEGIFHEERLAFFTRGKILGKYLLTAAYDSDKERRDGVFQ AIDPEKYYPVYGDATDIGYEAESRGKIYLKLESGRSYLMAGDYRTDLSENEFSRYDRALNGAKFEVNTKSVTVKGFESRT EETVTRDDIPGNGTSGHYFLSRRDVFENSERVRIEVRDRYHTERVIAVTEKVRYADYSIDYQAGTILFKEPVPSLDQFLN PVTIVVNYQATGPGEERYVYGGRAEIRSENGSHIGGTAVVEEQARQDNTLFGLDAAWRLGERLTLKGEGAVSENLEHGRG SAWKTELAARPVDPLLLNLYYRKVESDFFNTSMTGTELGTEKYGGRADYRVGADTLVFAESFLHRFELGDRKLFANHAGM VKKFSLLHLEGGVKVVREERDGRTEESDLVYAGVFAPLTKKLDATLRREQLLSASGVADYQTKTFAKLDYRLTERTKAFL TEEYQEGSPLIRQATLFGLESRLSDRMRLTTGYQMSSGASGYSQQSNVDLNTRLMEREGFSLDSRTGYQIEHALSQQRGQ AIVGLNSRYRAAEGLYLNSSLERVQTVQGNTGTRTAFTLGGEYLRARDLKLSGRYEVRTGPGETASLYGANAAYKMSPSL TLLGKLSLWDRDADAGDDVIFDGYLGSAFRPLAGQPLQLLTLARYKVEDRRSLPGSFESRSVILSAEPTYRIVSRWSAQG KYAGKLSWADGVGGMMQSYTDLVLAGLSYDLAERWEIAAYLKLMNQYDARMHSLGAVGSAGYRVYRNVVLSAGYNFARLD DRDLTGETFQGQGPFVGIKVKFDEDMFESRQAKVIPIPVPPPAQVAKVPPPAALVPALLVRAERLDEPLLLSGSAELFTL LVNGERAKLPSTEVTLTREHLGSLELKGGRFPAPLVFLVSVEQPEQVGSWTLKVMNREGEALRTLEGTGAPAKRIPWLGD TDRRKVEQGEIYQYQLQVTYLDGSIFSTGRELFGVNRREAVLLTLSGGAFVFDRSELTLEAKHLLKGAARVLRARPQEKV IVEGHTDGIGSVEYNMALSQRRCDAAADYLVREEGIAGSRLLRRWYGKSRPVADNVTTPGRRLNRRVELKGDFKELHPVS PDDRYRTKSFVVINGRSIPVDPLGRFDTTFPGNTLDLDLEMGDSQGRFLATSLPLPDLAVTGPPAETLVGYGTEASGVRV DADGKGHCMLSGTVEGTSMELAGRKVPLDEAGRFTLDLPLAEGDQVLGVVLRNGSGCSKLMNLRLRSERQTMPAARGER
Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 OmpA-like domain [H]
Homologues:
Organism=Escherichia coli, GI48994946, Length=102, Percent_Identity=39.2156862745098, Blast_Score=69, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011250 - InterPro: IPR006664 - InterPro: IPR006690 - InterPro: IPR006665 - InterPro: IPR008722 [H]
Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]
EC number: NA
Molecular weight: Translated: 215185; Mature: 215054
Theoretical pI: Translated: 6.90; Mature: 6.90
Prosite motif: PS51123 OMPA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIAAGKKRRRWGGLRLIALALLLALPGTAFSLTPAGTVIRHDFSARFATPGLREVRSNE CCCCCCCCHHHCCCHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCCCCCCCHHHHHCCC TQVSVKDLSDPALVPPRTATTNANVPVDFRHTLTNRGNFPDSFRLKAAAVDAALPENGQA CEEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCC PLLRFYAADGVTPFPHDAGGLQVVGPLEPGASVELVLRATPPAGSEGRVALIAVSATSVL CEEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEEEEECEEE VPARSASLTNQLQVPAGGVSFFKAVSPVGSVLPGTVLTYSISLGNSGGTPVAGVRVVDPL EECCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEECCC DPLLEYQPGSAALPAGVPGTVSFDAATRTLVFDISSLPAGFSGEITFQARVRDDAPGNAS CHHHHCCCCCCCCCCCCCCEEEECCCCEEEEEEHHHCCCCCCCEEEEEEEECCCCCCCCE IVNTAGVSTAGNAAPFLSNSTLNTVLVRLLQVTKTAGSSSAEAGDIVSYAVRVQNIGDGV EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCH LDHVTVADRIPRGFRYLKGSSHVDGFAVADPVGGGQQLSWDLGSFEHGAFKVLNYRLVVS HHHHHHHHHCCCCCEECCCCCCCCCEEEECCCCCCCEEEECCCCCCCCEEEEEEEEEEEE ADAPVGTAVNWARATGTPASGGSVVSPPASAAVKVRGSVLGSKAIIMGRVFHDGNGNGVP CCCCCCCCEEEHCCCCCCCCCCCEECCCCCCEEEEECHHCCCCEEEEEEEEECCCCCCCC DRGERGEAGVRVYLEDGSFVFTDVEGQYSFTGVSAGDHVVKLDRSTLNPGFVSVPYNTAF CCCCCCCCCEEEEEECCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCEEECCCCCEE AGVGCSQFITVPFGGPARGDFALAANPAGPAGPTGPTGPTGPTGPTGPTGPTGPTSPTSP CCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TSPTSPTSPTSPTQSAPPATEPAAASRLRLTPDRVELPADAKTSVPFKVELLDSAGRRVP CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCEEEEEECCCCCCCC GSTTVTLFLAKGTILESDLDPALPGHQVRITDGLGVFQVRSGRATGDDLLIAKDGDGSAA CCCEEEEEEECCEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCCCEEEEECCCCCCE QAALFFSPDRRDWILVGLGSLTVGGKAVSGNLEKIDKDDRFDEGIFHEERLAFFTRGKIL EEEEEECCCCCCEEEEEECCEEECCEEECCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHH GKYLLTAAYDSDKERRDGVFQAIDPEKYYPVYGDATDIGYEAESRGKIYLKLESGRSYLM HHHHHHHHCCCCHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEE AGDYRTDLSENEFSRYDRALNGAKFEVNTKSVTVKGFESRTEETVTRDDIPGNGTSGHYF ECCCCCCCCHHHHHHHHHHCCCCEEEEECCEEEEECCCCCCHHHHHCCCCCCCCCCCEEE LSRRDVFENSERVRIEVRDRYHTERVIAVTEKVRYADYSIDYQAGTILFKEPVPSLDQFL EEECHHHCCCCEEEEEEECCCCCCEEEEEEHHEEEECEEEEECCCEEEEECCCCHHHHHC NPVTIVVNYQATGPGEERYVYGGRAEIRSENGSHIGGTAVVEEQARQDNTLFGLDAAWRL CCEEEEEEEECCCCCCCEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCEEECCHHHHC GERLTLKGEGAVSENLEHGRGSAWKTELAARPVDPLLLNLYYRKVESDFFNTSMTGTELG CCEEEEECCCCCHHCHHHCCCCCEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC TEKYGGRADYRVGADTLVFAESFLHRFELGDRKLFANHAGMVKKFSLLHLEGGVKVVREE CHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEHHCCCHHHEEEEEEECCCEEEEEEC RDGRTEESDLVYAGVFAPLTKKLDATLRREQLLSASGVADYQTKTFAKLDYRLTERTKAF CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEHHHHHHHHHHH LTEEYQEGSPLIRQATLFGLESRLSDRMRLTTGYQMSSGASGYSQQSNVDLNTRLMEREG HHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCEECCCCCCCCCCCCCCHHHEEECCCC FSLDSRTGYQIEHALSQQRGQAIVGLNSRYRAAEGLYLNSSLERVQTVQGNTGTRTAFTL CCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEECCHHHHHHEECCCCCCEEEEEE GGEYLRARDLKLSGRYEVRTGPGETASLYGANAAYKMSPSLTLLGKLSLWDRDADAGDDV CCCEEEEECEEECCCEEEECCCCCCEEEECCCCEEEECCCEEEEEEEEEECCCCCCCCCE IFDGYLGSAFRPLAGQPLQLLTLARYKVEDRRSLPGSFESRSVILSAEPTYRIVSRWSAQ EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHCCC GKYAGKLSWADGVGGMMQSYTDLVLAGLSYDLAERWEIAAYLKLMNQYDARMHSLGAVGS CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC AGYRVYRNVVLSAGYNFARLDDRDLTGETFQGQGPFVGIKVKFDEDMFESRQAKVIPIPV CHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHCCCCEEEEECC PPPAQVAKVPPPAALVPALLVRAERLDEPLLLSGSAELFTLLVNGERAKLPSTEVTLTRE CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCCCCCEEEEEHH HLGSLELKGGRFPAPLVFLVSVEQPEQVGSWTLKVMNREGEALRTLEGTGAPAKRIPWLG HCCCEEECCCCCCCCEEEEEECCCCHHCCCEEEEEECCCCCEEEEECCCCCCHHHCCCCC DTDRRKVEQGEIYQYQLQVTYLDGSIFSTGRELFGVNRREAVLLTLSGGAFVFDRSELTL CCHHHHCCCCCEEEEEEEEEEECCCHHHCCHHHHCCCCCCEEEEEEECCEEEEECCCCCH EAKHLLKGAARVLRARPQEKVIVEGHTDGIGSVEYNMALSQRRCDAAADYLVREEGIAGS HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHH RLLRRWYGKSRPVADNVTTPGRRLNRRVELKGDFKELHPVSPDDRYRTKSFVVINGRSIP HHHHHHHCCCCCCCCCCCCCCHHHCEEEEECCCHHHCCCCCCCCCCCCEEEEEECCCCCC VDPLGRFDTTFPGNTLDLDLEMGDSQGRFLATSLPLPDLAVTGPPAETLVGYGTEASGVR CCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCEECCCCHHHHEECCCCCCCEE VDADGKGHCMLSGTVEGTSMELAGRKVPLDEAGRFTLDLPLAEGDQVLGVVLRNGSGCSK EECCCCCEEEEEEEECCCEEEECCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCHHH LMNLRLRSERQTMPAARGER HHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure AIAAGKKRRRWGGLRLIALALLLALPGTAFSLTPAGTVIRHDFSARFATPGLREVRSNE CCCCCCCHHHCCCHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCCCCCCCHHHHHCCC TQVSVKDLSDPALVPPRTATTNANVPVDFRHTLTNRGNFPDSFRLKAAAVDAALPENGQA CEEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCC PLLRFYAADGVTPFPHDAGGLQVVGPLEPGASVELVLRATPPAGSEGRVALIAVSATSVL CEEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEEEEECEEE VPARSASLTNQLQVPAGGVSFFKAVSPVGSVLPGTVLTYSISLGNSGGTPVAGVRVVDPL EECCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEECCC DPLLEYQPGSAALPAGVPGTVSFDAATRTLVFDISSLPAGFSGEITFQARVRDDAPGNAS CHHHHCCCCCCCCCCCCCCEEEECCCCEEEEEEHHHCCCCCCCEEEEEEEECCCCCCCCE IVNTAGVSTAGNAAPFLSNSTLNTVLVRLLQVTKTAGSSSAEAGDIVSYAVRVQNIGDGV EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCH LDHVTVADRIPRGFRYLKGSSHVDGFAVADPVGGGQQLSWDLGSFEHGAFKVLNYRLVVS HHHHHHHHHCCCCCEECCCCCCCCCEEEECCCCCCCEEEECCCCCCCCEEEEEEEEEEEE ADAPVGTAVNWARATGTPASGGSVVSPPASAAVKVRGSVLGSKAIIMGRVFHDGNGNGVP CCCCCCCCEEEHCCCCCCCCCCCEECCCCCCEEEEECHHCCCCEEEEEEEEECCCCCCCC DRGERGEAGVRVYLEDGSFVFTDVEGQYSFTGVSAGDHVVKLDRSTLNPGFVSVPYNTAF CCCCCCCCCEEEEEECCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCEEECCCCCEE AGVGCSQFITVPFGGPARGDFALAANPAGPAGPTGPTGPTGPTGPTGPTGPTGPTSPTSP CCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TSPTSPTSPTSPTQSAPPATEPAAASRLRLTPDRVELPADAKTSVPFKVELLDSAGRRVP CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCEEEEEECCCCCCCC GSTTVTLFLAKGTILESDLDPALPGHQVRITDGLGVFQVRSGRATGDDLLIAKDGDGSAA CCCEEEEEEECCEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCCCEEEEECCCCCCE QAALFFSPDRRDWILVGLGSLTVGGKAVSGNLEKIDKDDRFDEGIFHEERLAFFTRGKIL EEEEEECCCCCCEEEEEECCEEECCEEECCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHH GKYLLTAAYDSDKERRDGVFQAIDPEKYYPVYGDATDIGYEAESRGKIYLKLESGRSYLM HHHHHHHHCCCCHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEE AGDYRTDLSENEFSRYDRALNGAKFEVNTKSVTVKGFESRTEETVTRDDIPGNGTSGHYF ECCCCCCCCHHHHHHHHHHCCCCEEEEECCEEEEECCCCCCHHHHHCCCCCCCCCCCEEE LSRRDVFENSERVRIEVRDRYHTERVIAVTEKVRYADYSIDYQAGTILFKEPVPSLDQFL EEECHHHCCCCEEEEEEECCCCCCEEEEEEHHEEEECEEEEECCCEEEEECCCCHHHHHC NPVTIVVNYQATGPGEERYVYGGRAEIRSENGSHIGGTAVVEEQARQDNTLFGLDAAWRL CCEEEEEEEECCCCCCCEEEECCCEEEECCCCCCCCCHHHHHHHHHCCCCEEECCHHHHC GERLTLKGEGAVSENLEHGRGSAWKTELAARPVDPLLLNLYYRKVESDFFNTSMTGTELG CCEEEEECCCCCHHCHHHCCCCCEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC TEKYGGRADYRVGADTLVFAESFLHRFELGDRKLFANHAGMVKKFSLLHLEGGVKVVREE CHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEHHCCCHHHEEEEEEECCCEEEEEEC RDGRTEESDLVYAGVFAPLTKKLDATLRREQLLSASGVADYQTKTFAKLDYRLTERTKAF CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEHHHHHHHHHHH LTEEYQEGSPLIRQATLFGLESRLSDRMRLTTGYQMSSGASGYSQQSNVDLNTRLMEREG HHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCEECCCCCCCCCCCCCCHHHEEECCCC FSLDSRTGYQIEHALSQQRGQAIVGLNSRYRAAEGLYLNSSLERVQTVQGNTGTRTAFTL CCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEECCHHHHHHEECCCCCCEEEEEE GGEYLRARDLKLSGRYEVRTGPGETASLYGANAAYKMSPSLTLLGKLSLWDRDADAGDDV CCCEEEEECEEECCCEEEECCCCCCEEEECCCCEEEECCCEEEEEEEEEECCCCCCCCCE IFDGYLGSAFRPLAGQPLQLLTLARYKVEDRRSLPGSFESRSVILSAEPTYRIVSRWSAQ EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHCCC GKYAGKLSWADGVGGMMQSYTDLVLAGLSYDLAERWEIAAYLKLMNQYDARMHSLGAVGS CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC AGYRVYRNVVLSAGYNFARLDDRDLTGETFQGQGPFVGIKVKFDEDMFESRQAKVIPIPV CHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHCCCCEEEEECC PPPAQVAKVPPPAALVPALLVRAERLDEPLLLSGSAELFTLLVNGERAKLPSTEVTLTRE CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCCCCCEEEEEHH HLGSLELKGGRFPAPLVFLVSVEQPEQVGSWTLKVMNREGEALRTLEGTGAPAKRIPWLG HCCCEEECCCCCCCCEEEEEECCCCHHCCCEEEEEECCCCCEEEEECCCCCCHHHCCCCC DTDRRKVEQGEIYQYQLQVTYLDGSIFSTGRELFGVNRREAVLLTLSGGAFVFDRSELTL CCHHHHCCCCCEEEEEEEEEEECCCHHHCCHHHHCCCCCCEEEEEEECCEEEEECCCCCH EAKHLLKGAARVLRARPQEKVIVEGHTDGIGSVEYNMALSQRRCDAAADYLVREEGIAGS HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHH RLLRRWYGKSRPVADNVTTPGRRLNRRVELKGDFKELHPVSPDDRYRTKSFVVINGRSIP HHHHHHHCCCCCCCCCCCCCCHHHCEEEEECCCHHHCCCCCCCCCCCCEEEEEECCCCCC VDPLGRFDTTFPGNTLDLDLEMGDSQGRFLATSLPLPDLAVTGPPAETLVGYGTEASGVR CCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCEECCCCHHHHEECCCCCCCEE VDADGKGHCMLSGTVEGTSMELAGRKVPLDEAGRFTLDLPLAEGDQVLGVVLRNGSGCSK EECCCCCEEEEEEEECCCEEEECCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCHHH LMNLRLRSERQTMPAARGER HHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2447060; 10984043 [H]