| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119073
Identifier: 197119073
GI number: 197119073
Start: 3118498
End: 3119094
Strand: Reverse
Name: 197119073
Synonym: Gbem_2700
Alternate gene names: NA
Gene position: 3119094-3118498 (Counterclockwise)
Preceding gene: 197119075
Following gene: 308535316
Centisome position: 67.58
GC content: 61.64
Gene sequence:
>597_bases ATGTCAAAGCCCGAAGAAGACGAGCTGCAGATCGCCTGCCAGCAGATCCTGCTCCCTGACGCGTCGGTGTTCTCGGTGCA GTGGGTGGACCTGTCTCTCCCGGCCGGTTCCCGTGTCTGCGCGAAGCTGTTGCTGGAGCAGTACTTCAAGTCGATCAGGC GCTACACCCTCGGGCTGGTTCGTCCCGCCGTAAGCATCGACGGGGTCCATTTCCGGGTCATGTCGACGCGCTTCGCGCTT CTTTCCTTCGAGCCCGCAAGGTACGAGGCTGACGGGGAGCTGGAAGCGGTTCATCTCTATATCAACGGCGGCTTCCTGGT GCAGGCGGGGGAGTGCGGCAGGGGGATGTTTTCCCTCTTGGCGCAAACCCGTCCCGACGGGCTCCGCGTCACCGTCGAGC TTTCCGACTACTGCCCGCTCCTTCTCGGGAGCAACACCCCCTCCAAGTTGCGCAAACTCTTCTACGGCCTCACCCAGTCC TACTTTCACAAAGTGGTGACGGTGAAATACCTCTTCCACCTCCACCGTTTCCTTACCGGCGCCAAACAGCGCGCCCGGGT CAAAAAGGTCCAGGTGCGTCAGGGCACGGACATCTGA
Upstream 100 bases:
>100_bases ATCTCTCCCTTTATTGCGCATGCGTCTGTCTATCTGTGGCGACCGGCAGCACTGCGTGTTATGTTAGACGGCAGTTTCAT AGTCCCTACCGGAGCGTGTG
Downstream 100 bases:
>100_bases CCTACTATCTTTTCGGTGATCGACTCTGCTACTTGAGGGATTTAACAGTGGCGGGGGCTAATGTGGGAAAGGATGGAAAA GGGGACAGGCTACTTTTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MSKPEEDELQIACQQILLPDASVFSVQWVDLSLPAGSRVCAKLLLEQYFKSIRRYTLGLVRPAVSIDGVHFRVMSTRFAL LSFEPARYEADGELEAVHLYINGGFLVQAGECGRGMFSLLAQTRPDGLRVTVELSDYCPLLLGSNTPSKLRKLFYGLTQS YFHKVVTVKYLFHLHRFLTGAKQRARVKKVQVRQGTDI
Sequences:
>Translated_198_residues MSKPEEDELQIACQQILLPDASVFSVQWVDLSLPAGSRVCAKLLLEQYFKSIRRYTLGLVRPAVSIDGVHFRVMSTRFAL LSFEPARYEADGELEAVHLYINGGFLVQAGECGRGMFSLLAQTRPDGLRVTVELSDYCPLLLGSNTPSKLRKLFYGLTQS YFHKVVTVKYLFHLHRFLTGAKQRARVKKVQVRQGTDI >Mature_197_residues SKPEEDELQIACQQILLPDASVFSVQWVDLSLPAGSRVCAKLLLEQYFKSIRRYTLGLVRPAVSIDGVHFRVMSTRFALL SFEPARYEADGELEAVHLYINGGFLVQAGECGRGMFSLLAQTRPDGLRVTVELSDYCPLLLGSNTPSKLRKLFYGLTQSY FHKVVTVKYLFHLHRFLTGAKQRARVKKVQVRQGTDI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22355; Mature: 22224
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKPEEDELQIACQQILLPDASVFSVQWVDLSLPAGSRVCAKLLLEQYFKSIRRYTLGLV CCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH RPAVSIDGVHFRVMSTRFALLSFEPARYEADGELEAVHLYINGGFLVQAGECGRGMFSLL CCCCEECCEEEEEEHHEEEEEECCCCCCCCCCCEEEEEEEEECCEEEECCCCCHHHHHHH AQTRPDGLRVTVELSDYCPLLLGSNTPSKLRKLFYGLTQSYFHKVVTVKYLFHLHRFLTG HHCCCCCEEEEEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKQRARVKKVQVRQGTDI HHHHHHHHHHHHCCCCCC >Mature Secondary Structure SKPEEDELQIACQQILLPDASVFSVQWVDLSLPAGSRVCAKLLLEQYFKSIRRYTLGLV CCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH RPAVSIDGVHFRVMSTRFALLSFEPARYEADGELEAVHLYINGGFLVQAGECGRGMFSLL CCCCEECCEEEEEEHHEEEEEECCCCCCCCCCCEEEEEEEEECCEEEECCCCCHHHHHHH AQTRPDGLRVTVELSDYCPLLLGSNTPSKLRKLFYGLTQSYFHKVVTVKYLFHLHRFLTG HHCCCCCEEEEEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKQRARVKKVQVRQGTDI HHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA