| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119004
Identifier: 197119004
GI number: 197119004
Start: 3042640
End: 3043893
Strand: Reverse
Name: 197119004
Synonym: Gbem_2627
Alternate gene names: NA
Gene position: 3043893-3042640 (Counterclockwise)
Preceding gene: 197119009
Following gene: 308535309
Centisome position: 65.95
GC content: 55.42
Gene sequence:
>1254_bases ATGAGGAGAAAATATGTGCTGGTTGCAGCAGTGGTTACCACGCTGGCGGGGCAGGAGGTCGGAGCGAGAACTCTGGAGGA CGTTCTGAAAGAAAAGGGGGTTATCACAGAGCAGGATTACAAGGAGGTAACCAAAAGCAAGGCTCAGAGCTACAAAATTG GCAAAGGATTCACACTTACATCCTCCGAAGAAAAGTTCCAGATGTCGCTCGGCGGCAGACTCCAAACTCGCTACACCTAT ACCGATGGCGAAGACAGTTCCCTTACTCCCAACGCGAGCCGGTGGGAGGTCAGGAGGATGAAGTTATGGATAAATGGCTA CGCCTACAACAAGGATCTTACCTACCTGCTCCAGGTTGATTTCGTCTCGGGAGGCTCCTCAAGGCTCCTCGAGCACGCCT ACCTCAACTATCGCTTCATCGATGAGGTTCAGCTTCTGGCAGGACAGACCAAGGTTCCGTTCGGGAGGCAGTGGCTCAAC TCCTCGGGCAGCCAGCAATTTGTCGACCGCTCCATTACGTCCGACACCTTCCGTCCGGGTTACGATGCTGGCGCAAAATT GGGCGGTGATCTCTTCGGTGGGATCAGCACCTATGAGATAGGTGCCTATGGCGGCGCCGGGCAGAGCGCGACCCGTGCAA CGAACGGAGATAACACCGCCACAGCCATCGCTGCCCGCGTGACCGTCAATCCCTTCGGCAAGATGCCCTACTCGGAAAGC GACCTTGATGACACAGCGACGCCGCTCCTCTCCATCGGTGCCAACTACTACGGCAACACCCTCCGTAAGACTGCTGCAAC CACCTTTGAAACCAACAACATCACTTTAGCGGGAACAAATGGTTGGCTCGGCAGGAACGTTGCGGCGTTTGCGACGGGCG AACTGGTTGATATCGACAGCTACGGCGCCGATGCCGCATTCAAATGGCGGGGTGTTTTCGCATTGACTGAGTATTTGTAC GGGCGCGGGAAAGGCGGCGACAGCGGCAGCATTGTCCGTGCGCACGGGTGGTATGCACAGGCAGGTTATTGCATAGTTCC CCAGACGCTTGAGGTGGCTTTGCGTTACGCTTTCATCGACCCGAACCGCGCCGTCTCAGATGACCAGCGCACAGACGTGT CGGCAGCGGTTTCCTATTATTTTAACAAGCACAACCTGAAGATTCAGGGAGATGTCACCAACGCTCACGACCAGAGCAAG GGTAGCGGTGTTGATGACCAGATTTACCGGCTACAGGCCCAGATAATTTTCTAA
Upstream 100 bases:
>100_bases TAGTCCTCTATATATCGGAAATGGTGCAGCCTTGACGCCATCTGCTCAGATAGCCGGCTGAGCGGTCCAGACTCTTCAAA TAAAACAAAAGGAGGAGAAA
Downstream 100 bases:
>100_bases TTACTGAATAAAGAACGTAAACACTTCATAAGATGTGGTTAACGACATAGACCCGCTTCAGAGTTGAAGGAAAGGAGGCG TACTTTCATGGTAGAAAACA
Product: phosphate-selective porin
Products: NA
Alternate protein names: Phosphate-Selective Porin; Phosphate-Selective Porin O And P Superfamily; Porin P
Number of amino acids: Translated: 417; Mature: 417
Protein sequence:
>417_residues MRRKYVLVAAVVTTLAGQEVGARTLEDVLKEKGVITEQDYKEVTKSKAQSYKIGKGFTLTSSEEKFQMSLGGRLQTRYTY TDGEDSSLTPNASRWEVRRMKLWINGYAYNKDLTYLLQVDFVSGGSSRLLEHAYLNYRFIDEVQLLAGQTKVPFGRQWLN SSGSQQFVDRSITSDTFRPGYDAGAKLGGDLFGGISTYEIGAYGGAGQSATRATNGDNTATAIAARVTVNPFGKMPYSES DLDDTATPLLSIGANYYGNTLRKTAATTFETNNITLAGTNGWLGRNVAAFATGELVDIDSYGADAAFKWRGVFALTEYLY GRGKGGDSGSIVRAHGWYAQAGYCIVPQTLEVALRYAFIDPNRAVSDDQRTDVSAAVSYYFNKHNLKIQGDVTNAHDQSK GSGVDDQIYRLQAQIIF
Sequences:
>Translated_417_residues MRRKYVLVAAVVTTLAGQEVGARTLEDVLKEKGVITEQDYKEVTKSKAQSYKIGKGFTLTSSEEKFQMSLGGRLQTRYTY TDGEDSSLTPNASRWEVRRMKLWINGYAYNKDLTYLLQVDFVSGGSSRLLEHAYLNYRFIDEVQLLAGQTKVPFGRQWLN SSGSQQFVDRSITSDTFRPGYDAGAKLGGDLFGGISTYEIGAYGGAGQSATRATNGDNTATAIAARVTVNPFGKMPYSES DLDDTATPLLSIGANYYGNTLRKTAATTFETNNITLAGTNGWLGRNVAAFATGELVDIDSYGADAAFKWRGVFALTEYLY GRGKGGDSGSIVRAHGWYAQAGYCIVPQTLEVALRYAFIDPNRAVSDDQRTDVSAAVSYYFNKHNLKIQGDVTNAHDQSK GSGVDDQIYRLQAQIIF >Mature_417_residues MRRKYVLVAAVVTTLAGQEVGARTLEDVLKEKGVITEQDYKEVTKSKAQSYKIGKGFTLTSSEEKFQMSLGGRLQTRYTY TDGEDSSLTPNASRWEVRRMKLWINGYAYNKDLTYLLQVDFVSGGSSRLLEHAYLNYRFIDEVQLLAGQTKVPFGRQWLN SSGSQQFVDRSITSDTFRPGYDAGAKLGGDLFGGISTYEIGAYGGAGQSATRATNGDNTATAIAARVTVNPFGKMPYSES DLDDTATPLLSIGANYYGNTLRKTAATTFETNNITLAGTNGWLGRNVAAFATGELVDIDSYGADAAFKWRGVFALTEYLY GRGKGGDSGSIVRAHGWYAQAGYCIVPQTLEVALRYAFIDPNRAVSDDQRTDVSAAVSYYFNKHNLKIQGDVTNAHDQSK GSGVDDQIYRLQAQIIF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45690; Mature: 45690
Theoretical pI: Translated: 7.60; Mature: 7.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRKYVLVAAVVTTLAGQEVGARTLEDVLKEKGVITEQDYKEVTKSKAQSYKIGKGFTLT CCCEEEEHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCEECCCCEEEC SSEEKFQMSLGGRLQTRYTYTDGEDSSLTPNASRWEVRRMKLWINGYAYNKDLTYLLQVD CCCCCEEHCCCCEEEEEEEECCCCCCCCCCCCCHHEEEEEEEEEEEEEECCCEEEEEEEE FVSGGSSRLLEHAYLNYRFIDEVQLLAGQTKVPFGRQWLNSSGSQQFVDRSITSDTFRPG EECCCHHHHHHHHHCCEEEHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCCCCC YDAGAKLGGDLFGGISTYEIGAYGGAGQSATRATNGDNTATAIAARVTVNPFGKMPYSES CCCCCCCCCHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCC DLDDTATPLLSIGANYYGNTLRKTAATTFETNNITLAGTNGWLGRNVAAFATGELVDIDS CCCHHHHHHHHHCCCHHCCHHHHHHHEEEECCCEEEEECCCCCCCCEEEEECCCEEEECC YGADAAFKWRGVFALTEYLYGRGKGGDSGSIVRAHGWYAQAGYCIVPQTLEVALRYAFID CCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEEECCCEECCCEEECCHHHEEEEEEEEEC PNRAVSDDQRTDVSAAVSYYFNKHNLKIQGDVTNAHDQSKGSGVDDQIYRLQAQIIF CCCCCCCCCHHHHHHHHHHEEECCCEEEEECCCCCCCCCCCCCCCHHHEEEEEEEEC >Mature Secondary Structure MRRKYVLVAAVVTTLAGQEVGARTLEDVLKEKGVITEQDYKEVTKSKAQSYKIGKGFTLT CCCEEEEHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCEECCCCEEEC SSEEKFQMSLGGRLQTRYTYTDGEDSSLTPNASRWEVRRMKLWINGYAYNKDLTYLLQVD CCCCCEEHCCCCEEEEEEEECCCCCCCCCCCCCHHEEEEEEEEEEEEEECCCEEEEEEEE FVSGGSSRLLEHAYLNYRFIDEVQLLAGQTKVPFGRQWLNSSGSQQFVDRSITSDTFRPG EECCCHHHHHHHHHCCEEEHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCCCCC YDAGAKLGGDLFGGISTYEIGAYGGAGQSATRATNGDNTATAIAARVTVNPFGKMPYSES CCCCCCCCCHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCC DLDDTATPLLSIGANYYGNTLRKTAATTFETNNITLAGTNGWLGRNVAAFATGELVDIDS CCCHHHHHHHHHCCCHHCCHHHHHHHEEEECCCEEEEECCCCCCCCEEEEECCCEEEECC YGADAAFKWRGVFALTEYLYGRGKGGDSGSIVRAHGWYAQAGYCIVPQTLEVALRYAFID CCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEEECCCEECCCEEECCHHHEEEEEEEEEC PNRAVSDDQRTDVSAAVSYYFNKHNLKIQGDVTNAHDQSKGSGVDDQIYRLQAQIIF CCCCCCCCCHHHHHHHHHHEEECCCEEEEECCCCCCCCCCCCCCCHHHEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA