| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118868
Identifier: 197118868
GI number: 197118868
Start: 2883233
End: 2884891
Strand: Direct
Name: 197118868
Synonym: Gbem_2491
Alternate gene names: NA
Gene position: 2883233-2884891 (Clockwise)
Preceding gene: 197118867
Following gene: 197118869
Centisome position: 62.47
GC content: 63.35
Gene sequence:
>1659_bases ATGAAAACTCGAACAATCTGCTCCTGCCTCATCCTCGTACTTTGCTCGCCTTTGGCCGTCTCTGCCCAGACCACCAGCCT GGAAGCCAGATCCGCGATTCAGTCCGTCACCGTCTTCTCGGACCGGGCCCAGGTGACCCGAAAGGCGACGCTGTCGCTGA AAGCTGGGACCAACCTGGTCAGCTTCGACAACCTCCCCCAGGTGCTGGACGAGGAGTCACTTCGTGCCGTGGGGAAAGGG ACGGCGCCTGCCCGCATCGCCGGTATTACGGTGAAAAGGGTTTTCCTGGACCGGGCGCGGGACCAGCGGGTGCGCGAGCT GGAGGATGAGATCGCCGCCCTCACCCGCCAGGTGGAAAGCATCGAAGCCAAGCGCAAGGCGCTCGCCTCCCAGAGGGCCT TCATCGATTCCATCCGCGTCGGCTGGTCCGAACGGATCTCCAAGGAGCTTTCCGCCGGCAAGCCCACCGCTGCCGAGCTG GGAGAGGCGGTGCGCTTCGTGGGTGACAACGTGGGCAAAGTGGAGCAGCAGCTCTACGATGCGGAAGCGGCCAAGAAGCC CCTCAACGAGAAGATAGCTGCGCTCAGGAAAGAGCTGGAGCAAAACCTCGCCAACCGGCACAGGGAAGTGAAGTCGGCGC AGGTGGCCATAGAGGCGCAGCAGGACCTCAAGTTCGACCTAGACCTCTCCTACCTGGTGAGCCAGGCCACCTGGGAGCCC CTCTACGACGTGCGTCTCGGCGCCGACGGCAAGGAGGCGGAACTCGTCTACCGTGCCCAGGTGGCGCAGAAAACCGGGGA GAACTGGCCCGGCGTGAAGCTTTCCCTTTCCACGGCTGCCCCCGAGGTCGGCGGAGGCGCGCCGGAGCTCTCCCCTTGGC ATATCTCCTTCTACGAGCCCCCTCGGCCCATGGCCTACGCCGGCCGGGCCATGAAGGAGATGGCAGCCCCCGCTCCCGCG CCGATGGCTGCCGGCGCCTATCCGCTGGAAGCGCGGGAAGACCGGGGCGAGGAAGCGCAGCCTCTGACCTCGGACGTGGC GCAGGGGCAGACCTCGGTGCTCTTCCAGGTGCTGCAACCGGTGGATGTACCGTCCGACGGCACCCGCGCAGGGAGCGTCA TTGCCAGCGAAAAGGTGCCGGTCAGCGCCGAGTACCTGACCGTCCCGAAACTTTCCCCGCGCGTCTATCTCAAGTCGAAG GTCCGGAACAACACCCCCTACCCGCTTCTGGCCGGGGAGGTGAACATCTTCAACGACGCCACCTTCGTCGGCAAAAGCCG AATAAAAACCGTAAGCTCCGGCGAAGAATTCGACCTTTACTTCGGATCCGACGACCAGGTGAAGGTGAAGCGGGAAGCGG CCAGGGTGGCGAAAAAGGCGGGGCTCATCAGCGGCAACAACGTGACCTACCATGTAGTGATCGAACTGGTGAACTTCAAG AAGAGGGGGGTGGCGCTGACCCTTCTCGACCAGCAGCCGCTTCCCTCCAATGCGGAAATCAAGGTAAAGCTCGAAGAGGC AGATCCGCGTCCCTCCGGCACCAAGGAAGACGGGACGCTGGAATGGAAGCTGAACCTAGCCCCGGGGGAGAAAAAGAAGG TCTCCTACGACATCGTCATCGAATACCCCAAGGGGCGCGAACTGGCGGGAATGGAATAG
Upstream 100 bases:
>100_bases CAGCTTGGGAACGCAAGGCTGGCAAAGCTCCAGCTTGGATACGAGAACCTATTACAGTCAAAACACTCCCAACATCAGCT TGTTGACACCGAGGTCCTCA
Downstream 100 bases:
>100_bases AGACACGAACCTGAACGAAAGGAAGCCATGAGAACTTTATTTATTGCGGTAACGCTTGTGCTATGCACCGTTTCCCTTTC ACTGGCAGTGAAATTCGACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 552; Mature: 552
Protein sequence:
>552_residues MKTRTICSCLILVLCSPLAVSAQTTSLEARSAIQSVTVFSDRAQVTRKATLSLKAGTNLVSFDNLPQVLDEESLRAVGKG TAPARIAGITVKRVFLDRARDQRVRELEDEIAALTRQVESIEAKRKALASQRAFIDSIRVGWSERISKELSAGKPTAAEL GEAVRFVGDNVGKVEQQLYDAEAAKKPLNEKIAALRKELEQNLANRHREVKSAQVAIEAQQDLKFDLDLSYLVSQATWEP LYDVRLGADGKEAELVYRAQVAQKTGENWPGVKLSLSTAAPEVGGGAPELSPWHISFYEPPRPMAYAGRAMKEMAAPAPA PMAAGAYPLEAREDRGEEAQPLTSDVAQGQTSVLFQVLQPVDVPSDGTRAGSVIASEKVPVSAEYLTVPKLSPRVYLKSK VRNNTPYPLLAGEVNIFNDATFVGKSRIKTVSSGEEFDLYFGSDDQVKVKREAARVAKKAGLISGNNVTYHVVIELVNFK KRGVALTLLDQQPLPSNAEIKVKLEEADPRPSGTKEDGTLEWKLNLAPGEKKKVSYDIVIEYPKGRELAGME
Sequences:
>Translated_552_residues MKTRTICSCLILVLCSPLAVSAQTTSLEARSAIQSVTVFSDRAQVTRKATLSLKAGTNLVSFDNLPQVLDEESLRAVGKG TAPARIAGITVKRVFLDRARDQRVRELEDEIAALTRQVESIEAKRKALASQRAFIDSIRVGWSERISKELSAGKPTAAEL GEAVRFVGDNVGKVEQQLYDAEAAKKPLNEKIAALRKELEQNLANRHREVKSAQVAIEAQQDLKFDLDLSYLVSQATWEP LYDVRLGADGKEAELVYRAQVAQKTGENWPGVKLSLSTAAPEVGGGAPELSPWHISFYEPPRPMAYAGRAMKEMAAPAPA PMAAGAYPLEAREDRGEEAQPLTSDVAQGQTSVLFQVLQPVDVPSDGTRAGSVIASEKVPVSAEYLTVPKLSPRVYLKSK VRNNTPYPLLAGEVNIFNDATFVGKSRIKTVSSGEEFDLYFGSDDQVKVKREAARVAKKAGLISGNNVTYHVVIELVNFK KRGVALTLLDQQPLPSNAEIKVKLEEADPRPSGTKEDGTLEWKLNLAPGEKKKVSYDIVIEYPKGRELAGME >Mature_552_residues MKTRTICSCLILVLCSPLAVSAQTTSLEARSAIQSVTVFSDRAQVTRKATLSLKAGTNLVSFDNLPQVLDEESLRAVGKG TAPARIAGITVKRVFLDRARDQRVRELEDEIAALTRQVESIEAKRKALASQRAFIDSIRVGWSERISKELSAGKPTAAEL GEAVRFVGDNVGKVEQQLYDAEAAKKPLNEKIAALRKELEQNLANRHREVKSAQVAIEAQQDLKFDLDLSYLVSQATWEP LYDVRLGADGKEAELVYRAQVAQKTGENWPGVKLSLSTAAPEVGGGAPELSPWHISFYEPPRPMAYAGRAMKEMAAPAPA PMAAGAYPLEAREDRGEEAQPLTSDVAQGQTSVLFQVLQPVDVPSDGTRAGSVIASEKVPVSAEYLTVPKLSPRVYLKSK VRNNTPYPLLAGEVNIFNDATFVGKSRIKTVSSGEEFDLYFGSDDQVKVKREAARVAKKAGLISGNNVTYHVVIELVNFK KRGVALTLLDQQPLPSNAEIKVKLEEADPRPSGTKEDGTLEWKLNLAPGEKKKVSYDIVIEYPKGRELAGME
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Caenorhabditis elegans, GI17566996, Length=552, Percent_Identity=25.5434782608696, Blast_Score=151, Evalue=9e-37, Organism=Caenorhabditis elegans, GI17566994, Length=559, Percent_Identity=25.4025044722719, Blast_Score=140, Evalue=2e-33, Organism=Caenorhabditis elegans, GI115534513, Length=366, Percent_Identity=24.5901639344262, Blast_Score=120, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17566992, Length=531, Percent_Identity=24.4821092278719, Blast_Score=118, Evalue=7e-27, Organism=Caenorhabditis elegans, GI71988071, Length=536, Percent_Identity=24.0671641791045, Blast_Score=110, Evalue=3e-24, Organism=Caenorhabditis elegans, GI71988077, Length=310, Percent_Identity=22.9032258064516, Blast_Score=74, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60207; Mature: 60207
Theoretical pI: Translated: 8.37; Mature: 8.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTRTICSCLILVLCSPLAVSAQTTSLEARSAIQSVTVFSDRAQVTRKATLSLKAGTNLV CCHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHEHHHHHHHHHHEEEEECCCCEE SFDNLPQVLDEESLRAVGKGTAPARIAGITVKRVFLDRARDQRVRELEDEIAALTRQVES ECCCCHHHHCHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IEAKRKALASQRAFIDSIRVGWSERISKELSAGKPTAAELGEAVRFVGDNVGKVEQQLYD HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHH AEAAKKPLNEKIAALRKELEQNLANRHREVKSAQVAIEAQQDLKFDLDLSYLVSQATWEP HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEECCCHHHHHHHHCCCC LYDVRLGADGKEAELVYRAQVAQKTGENWPGVKLSLSTAAPEVGGGAPELSPWHISFYEP CEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCC PRPMAYAGRAMKEMAAPAPAPMAAGAYPLEAREDRGEEAQPLTSDVAQGQTSVLFQVLQP CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHC VDVPSDGTRAGSVIASEKVPVSAEYLTVPKLSPRVYLKSKVRNNTPYPLLAGEVNIFNDA CCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCEEHHHHCCCCCCEEEECCEEEECCC TFVGKSRIKTVSSGEEFDLYFGSDDQVKVKREAARVAKKAGLISGNNVTYHVVIELVNFK EECCHHHHEECCCCCCEEEEECCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCC KRGVALTLLDQQPLPSNAEIKVKLEEADPRPSGTKEDGTLEWKLNLAPGEKKKVSYDIVI CCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEE EYPKGRELAGME ECCCCCCCCCCC >Mature Secondary Structure MKTRTICSCLILVLCSPLAVSAQTTSLEARSAIQSVTVFSDRAQVTRKATLSLKAGTNLV CCHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHEHHHHHHHHHHEEEEECCCCEE SFDNLPQVLDEESLRAVGKGTAPARIAGITVKRVFLDRARDQRVRELEDEIAALTRQVES ECCCCHHHHCHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IEAKRKALASQRAFIDSIRVGWSERISKELSAGKPTAAELGEAVRFVGDNVGKVEQQLYD HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHH AEAAKKPLNEKIAALRKELEQNLANRHREVKSAQVAIEAQQDLKFDLDLSYLVSQATWEP HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEECCCHHHHHHHHCCCC LYDVRLGADGKEAELVYRAQVAQKTGENWPGVKLSLSTAAPEVGGGAPELSPWHISFYEP CEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCC PRPMAYAGRAMKEMAAPAPAPMAAGAYPLEAREDRGEEAQPLTSDVAQGQTSVLFQVLQP CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHC VDVPSDGTRAGSVIASEKVPVSAEYLTVPKLSPRVYLKSKVRNNTPYPLLAGEVNIFNDA CCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCEEHHHHCCCCCCEEEECCEEEECCC TFVGKSRIKTVSSGEEFDLYFGSDDQVKVKREAARVAKKAGLISGNNVTYHVVIELVNFK EECCHHHHEECCCCCCEEEEECCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCC KRGVALTLLDQQPLPSNAEIKVKLEEADPRPSGTKEDGTLEWKLNLAPGEKKKVSYDIVI CCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEE EYPKGRELAGME ECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA