| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is sfsA
Identifier: 197118843
GI number: 197118843
Start: 2854658
End: 2855353
Strand: Direct
Name: sfsA
Synonym: Gbem_2466
Alternate gene names: 197118843
Gene position: 2854658-2855353 (Clockwise)
Preceding gene: 197118834
Following gene: 197118844
Centisome position: 61.85
GC content: 66.81
Gene sequence:
>696_bases ATGAAACTGCCGCAGCCGCTTTTCCAGGGGACCCTGATCCGACGCTACCAGCGCTTTTTGGCGGACGTCGAGCTGGATGA CGGGACCGTGGTCACCGCCCACACCCCCAACACCGGGAGCATGATGGGGTGCGCCTGCCCCGGCAACCGGGTCCTCCTCT CCAAAAGCGCGAGCCTCACCAGGAAATACCCGCACAGCTGGGAGCTGGTGCAGGCCGACGGGACCTGGGTCGGGATCAAC ACCCAACTCCCCAACCTCCTCGCCAGGGAGGCGATCCTGGACGGGACCATTTCAGAGCTCTCCGGGTACCAGCAGATCCG CGGCGAGGTCCCCTACGGCAGCGGCAGCCGGATCGACCTTCTGCTCTCCGGGGAGCAGGGGCTTTGCTACGTGGAGACCA AGAACGTCACCCTGGTCGAGGACGGCGTCGCCCTCTTCCCCGACGCGGTGAGCGCCCGGGGGCAAAAGCACCTGAGGGAG CTCATGGAGATGGTGCGCCAGGGACACCGGGCCGTTAACCTCTTCATCGTGCAGCGTGCAGACGGCGCGGCCCTTGCCCC TGCCGACGCCATCGACCCCGTCTACGGGCGGCTCTTGAGAGAGGCGGCGCAAAACGGGGTTGAAATTCTCGCCTACCGCG CCGAGGTGACCCGGACCGAGGTGCGCCTGGAACGCGCGCTGCCTGTGCTGCTCTAA
Upstream 100 bases:
>100_bases CGGGGCGTATTTTTCTCTGGACAGCACGGGCCGCCAGCGGGTACCCTTTTCACCTCATTTGTCAAGCGTCCCGGCTCTCC GCTGGGGCGAAGGAGCAAGC
Downstream 100 bases:
>100_bases ACGGTTGACATCCCTAGGAAGGACGCTAGAGTTATAAGCGCTGTCCCGGGGGTCCAATGAGAATTCCAAGATTTACCATA TACGCCAAGGAGACCGGCGT
Product: sugar fermentation stimulation protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 231; Mature: 231
Protein sequence:
>231_residues MKLPQPLFQGTLIRRYQRFLADVELDDGTVVTAHTPNTGSMMGCACPGNRVLLSKSASLTRKYPHSWELVQADGTWVGIN TQLPNLLAREAILDGTISELSGYQQIRGEVPYGSGSRIDLLLSGEQGLCYVETKNVTLVEDGVALFPDAVSARGQKHLRE LMEMVRQGHRAVNLFIVQRADGAALAPADAIDPVYGRLLREAAQNGVEILAYRAEVTRTEVRLERALPVLL
Sequences:
>Translated_231_residues MKLPQPLFQGTLIRRYQRFLADVELDDGTVVTAHTPNTGSMMGCACPGNRVLLSKSASLTRKYPHSWELVQADGTWVGIN TQLPNLLAREAILDGTISELSGYQQIRGEVPYGSGSRIDLLLSGEQGLCYVETKNVTLVEDGVALFPDAVSARGQKHLRE LMEMVRQGHRAVNLFIVQRADGAALAPADAIDPVYGRLLREAAQNGVEILAYRAEVTRTEVRLERALPVLL >Mature_231_residues MKLPQPLFQGTLIRRYQRFLADVELDDGTVVTAHTPNTGSMMGCACPGNRVLLSKSASLTRKYPHSWELVQADGTWVGIN TQLPNLLAREAILDGTISELSGYQQIRGEVPYGSGSRIDLLLSGEQGLCYVETKNVTLVEDGVALFPDAVSARGQKHLRE LMEMVRQGHRAVNLFIVQRADGAALAPADAIDPVYGRLLREAAQNGVEILAYRAEVTRTEVRLERALPVLL
Specific function: Probable Regulatory Factor Involved In Maltose Metabolism. [C]
COG id: COG1489
COG function: function code R; DNA-binding protein, stimulates sugar fermentation
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sfsA family
Homologues:
Organism=Escherichia coli, GI1786340, Length=234, Percent_Identity=50.4273504273504, Blast_Score=229, Evalue=1e-61,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): SFSA_GEOBB (B5EG09)
Other databases:
- EMBL: CP001124 - RefSeq: YP_002139270.1 - GeneID: 6782463 - GenomeReviews: CP001124_GR - KEGG: gbm:Gbem_2466 - HOGENOM: HBG655520 - OMA: NTGSMLN - ProtClustDB: CLSK828952 - HAMAP: MF_00095 - InterPro: IPR005224 - TIGRFAMs: TIGR00230
Pfam domain/function: PF03749 SfsA
EC number: NA
Molecular weight: Translated: 25337; Mature: 25337
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLPQPLFQGTLIRRYQRFLADVELDDGTVVTAHTPNTGSMMGCACPGNRVLLSKSASLT CCCCCHHHHHHHHHHHHHHHHCEEECCCEEEEEECCCCCCEEEEECCCCEEEEECCCHHH RKYPHSWELVQADGTWVGINTQLPNLLAREAILDGTISELSGYQQIRGEVPYGSGSRIDL HCCCCCEEEEEECCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEEE LLSGEQGLCYVETKNVTLVEDGVALFPDAVSARGQKHLRELMEMVRQGHRAVNLFIVQRA EEECCCCEEEEEECCEEEEECCCEECCHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEEEC DGAALAPADAIDPVYGRLLREAAQNGVEILAYRAEVTRTEVRLERALPVLL CCCCCCCCHHCCHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKLPQPLFQGTLIRRYQRFLADVELDDGTVVTAHTPNTGSMMGCACPGNRVLLSKSASLT CCCCCHHHHHHHHHHHHHHHHCEEECCCEEEEEECCCCCCEEEEECCCCEEEEECCCHHH RKYPHSWELVQADGTWVGINTQLPNLLAREAILDGTISELSGYQQIRGEVPYGSGSRIDL HCCCCCEEEEEECCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEEE LLSGEQGLCYVETKNVTLVEDGVALFPDAVSARGQKHLRELMEMVRQGHRAVNLFIVQRA EEECCCCEEEEEECCEEEEECCCEECCHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEEEC DGAALAPADAIDPVYGRLLREAAQNGVEILAYRAEVTRTEVRLERALPVLL CCCCCCCCHHCCHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA