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The map label for this gene is rarA [H]

Identifier: 197118824

GI number: 197118824

Start: 2838242

End: 2839546

Strand: Direct

Name: rarA [H]

Synonym: Gbem_2447

Alternate gene names: 197118824

Gene position: 2838242-2839546 (Clockwise)

Preceding gene: 197118823

Following gene: 197118825

Centisome position: 61.5

GC content: 64.9

Gene sequence:

>1305_bases
ATGGAGGATCTCTTCAACGGCAACAGGGAAGAGTTCGCGCCTTTGGCCGAGCGGATGCGGCCGCGCAGCATGGCGGAGTA
CCTGGGGCAGGGGCATCTCGTCGGCGAAGGGAAGATGCTGCGCCGGCTGATCGAGAGCGACCGCCTCACCTCGCTCATCT
TCTGGGGCCCGCCCGGCAGCGGCAAGACGACGCTGGCCCGCATCATAGCCAACGCCACCCGCTCCCACTTCATCTTCTTC
TCCGCCATCATGAGCGGCATCAAAGAGATCCGCGAGGTGGTCAAGGAGGCCGAGGATACCCTGAAGTACCAGGGTAAGCG
GACCATCCTCTTCGTGGACGAGATCCACCGCTTCAACAAAAGCCAGCAGGACGCCTTTCTCCCCCACGTCGAGCGCGGCA
CCTTCACCATCATCGGCGCCACCACGGAAAATCCCTCCTTCGAGGTAATCGCACCGTTACTCTCCCGCTGCAAGGTCCTG
GTGCTGCAGCCGCTATCCGACGAAGACCTGCTGAAGATCCTGGAAAACGCACTCGCCGACCGAGAGCGGGGGCTGGGGGA
GCTGGAGCTTAGCGCCACCGCCGAGGCGCTCGCCTTCATGGCGGAGCAGGCCGCAGGCGACGCCCGGGTGGCCTTGAACA
CGCTTGAGACAGCGTCGCGCCTGGCGCACCAAGGGGAGATTACCCTGGAGAGCGCGCGCGAGGCGGTGCAGAAGAAGCCT
CTCCTTTACGACAAGGGGGGGGAGGAGCACTACAACGTCATCTCCGCCTTCATCAAGTCGATGCGCGGCTCCGACCCGGA
CGCGGCGCTCTATTGGCTCGCACGCATGCTGGAGGCGGGAGAGGACCCCATCTTCATACTGCGGCGCATGGTGATCTTCG
CCTCGGAAGACGTGGGGAACGCCGATCCCCGCGGGCTGCAGCTGGCAGTCTCCGCGCTGCAGGCATTCCAACTGGTGGGT
ATGCCGGAGGGAAGGATCATCCTCGGGCAGGCGGTCACCTACCTCGCCACCGCACCCAAGTCCAACGCCAGCTACAACGG
CATCAACGAGGCGCTCGCCGAGGTGAGAAAGAGCGGGGCGCAGCCGGTCCCGATGGAGATCAGGAACGCCCCGACCAAGC
TCATGAAGGGCTTGGGCTACGGCAAGGGGTACCTCTACCCCCACGACCACCAAGGGGTGGTCCGGCAGAACTACCTCCCC
GAGGCGCTCGCCGGGCGGCGCTTCTACACCCCCAAAGAGAGCGGCTACGAGAAGAGCATCAAGGAGCGGATGGAGTGGAT
CCGCGGCGAGCGGGAGAAGGGGTGA

Upstream 100 bases:

>100_bases
AGTTCTCCAGCGACCGGACCATAGACCAGTACGCCCGCGAGATCTGGGGGATCAAGCCGGTGGACATCCTTCCCGGTGCC
GTAGAGCTGCAGAGGCATTG

Downstream 100 bases:

>100_bases
CCCCTCTTCTGGCGGTCTTGAGTTACTCATTAAAGTCCCGCCCGCTGTTGTAATCGTTTTCCCCCATGATATATTCAACC
AGGCTTTCCTGCGGATCATG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MEDLFNGNREEFAPLAERMRPRSMAEYLGQGHLVGEGKMLRRLIESDRLTSLIFWGPPGSGKTTLARIIANATRSHFIFF
SAIMSGIKEIREVVKEAEDTLKYQGKRTILFVDEIHRFNKSQQDAFLPHVERGTFTIIGATTENPSFEVIAPLLSRCKVL
VLQPLSDEDLLKILENALADRERGLGELELSATAEALAFMAEQAAGDARVALNTLETASRLAHQGEITLESAREAVQKKP
LLYDKGGEEHYNVISAFIKSMRGSDPDAALYWLARMLEAGEDPIFILRRMVIFASEDVGNADPRGLQLAVSALQAFQLVG
MPEGRIILGQAVTYLATAPKSNASYNGINEALAEVRKSGAQPVPMEIRNAPTKLMKGLGYGKGYLYPHDHQGVVRQNYLP
EALAGRRFYTPKESGYEKSIKERMEWIRGEREKG

Sequences:

>Translated_434_residues
MEDLFNGNREEFAPLAERMRPRSMAEYLGQGHLVGEGKMLRRLIESDRLTSLIFWGPPGSGKTTLARIIANATRSHFIFF
SAIMSGIKEIREVVKEAEDTLKYQGKRTILFVDEIHRFNKSQQDAFLPHVERGTFTIIGATTENPSFEVIAPLLSRCKVL
VLQPLSDEDLLKILENALADRERGLGELELSATAEALAFMAEQAAGDARVALNTLETASRLAHQGEITLESAREAVQKKP
LLYDKGGEEHYNVISAFIKSMRGSDPDAALYWLARMLEAGEDPIFILRRMVIFASEDVGNADPRGLQLAVSALQAFQLVG
MPEGRIILGQAVTYLATAPKSNASYNGINEALAEVRKSGAQPVPMEIRNAPTKLMKGLGYGKGYLYPHDHQGVVRQNYLP
EALAGRRFYTPKESGYEKSIKERMEWIRGEREKG
>Mature_434_residues
MEDLFNGNREEFAPLAERMRPRSMAEYLGQGHLVGEGKMLRRLIESDRLTSLIFWGPPGSGKTTLARIIANATRSHFIFF
SAIMSGIKEIREVVKEAEDTLKYQGKRTILFVDEIHRFNKSQQDAFLPHVERGTFTIIGATTENPSFEVIAPLLSRCKVL
VLQPLSDEDLLKILENALADRERGLGELELSATAEALAFMAEQAAGDARVALNTLETASRLAHQGEITLESAREAVQKKP
LLYDKGGEEHYNVISAFIKSMRGSDPDAALYWLARMLEAGEDPIFILRRMVIFASEDVGNADPRGLQLAVSALQAFQLVG
MPEGRIILGQAVTYLATAPKSNASYNGINEALAEVRKSGAQPVPMEIRNAPTKLMKGLGYGKGYLYPHDHQGVVRQNYLP
EALAGRRFYTPKESGYEKSIKERMEWIRGEREKG

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=437, Percent_Identity=47.1395881006865, Blast_Score=382, Evalue=1e-106,
Organism=Homo sapiens, GI18426904, Length=437, Percent_Identity=42.5629290617849, Blast_Score=323, Evalue=1e-88,
Organism=Homo sapiens, GI4506491, Length=234, Percent_Identity=29.0598290598291, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI31881687, Length=234, Percent_Identity=29.0598290598291, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI1787119, Length=423, Percent_Identity=48.6997635933806, Blast_Score=401, Evalue=1e-113,
Organism=Saccharomyces cerevisiae, GI6324111, Length=420, Percent_Identity=39.2857142857143, Blast_Score=303, Evalue=5e-83,
Organism=Saccharomyces cerevisiae, GI6324039, Length=277, Percent_Identity=26.7148014440433, Blast_Score=83, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6324478, Length=247, Percent_Identity=26.3157894736842, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48283; Mature: 48283

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDLFNGNREEFAPLAERMRPRSMAEYLGQGHLVGEGKMLRRLIESDRLTSLIFWGPPGS
CCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCEECCHHHHHHHHHCCCCCEEEEECCCCC
GKTTLARIIANATRSHFIFFSAIMSGIKEIREVVKEAEDTLKYQGKRTILFVDEIHRFNK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCC
SQQDAFLPHVERGTFTIIGATTENPSFEVIAPLLSRCKVLVLQPLSDEDLLKILENALAD
CCCHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHH
RERGLGELELSATAEALAFMAEQAAGDARVALNTLETASRLAHQGEITLESAREAVQKKP
HHCCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCC
LLYDKGGEEHYNVISAFIKSMRGSDPDAALYWLARMLEAGEDPIFILRRMVIFASEDVGN
CEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
ADPRGLQLAVSALQAFQLVGMPEGRIILGQAVTYLATAPKSNASYNGINEALAEVRKSGA
CCCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
QPVPMEIRNAPTKLMKGLGYGKGYLYPHDHQGVVRQNYLPEALAGRRFYTPKESGYEKSI
CCCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCHHHCCCCCCCCCCCCHHHHH
KERMEWIRGEREKG
HHHHHHHHCCCCCC
>Mature Secondary Structure
MEDLFNGNREEFAPLAERMRPRSMAEYLGQGHLVGEGKMLRRLIESDRLTSLIFWGPPGS
CCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCEECCHHHHHHHHHCCCCCEEEEECCCCC
GKTTLARIIANATRSHFIFFSAIMSGIKEIREVVKEAEDTLKYQGKRTILFVDEIHRFNK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCC
SQQDAFLPHVERGTFTIIGATTENPSFEVIAPLLSRCKVLVLQPLSDEDLLKILENALAD
CCCHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHH
RERGLGELELSATAEALAFMAEQAAGDARVALNTLETASRLAHQGEITLESAREAVQKKP
HHCCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCC
LLYDKGGEEHYNVISAFIKSMRGSDPDAALYWLARMLEAGEDPIFILRRMVIFASEDVGN
CEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
ADPRGLQLAVSALQAFQLVGMPEGRIILGQAVTYLATAPKSNASYNGINEALAEVRKSGA
CCCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
QPVPMEIRNAPTKLMKGLGYGKGYLYPHDHQGVVRQNYLPEALAGRRFYTPKESGYEKSI
CCCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCHHHCCCCCCCCCCCCHHHHH
KERMEWIRGEREKG
HHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]