| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is ccaA [H]
Identifier: 197118675
GI number: 197118675
Start: 2664329
End: 2666956
Strand: Reverse
Name: ccaA [H]
Synonym: Gbem_2294
Alternate gene names: 197118675
Gene position: 2666956-2664329 (Counterclockwise)
Preceding gene: 197118676
Following gene: 197118674
Centisome position: 57.79
GC content: 62.21
Gene sequence:
>2628_bases ATGGATGTAATCACCACGCATCTAAACGCCGACTTCGACTGTATCGGCTCCATGGTTGCCGCGAAGAAGCTTTACCCCGA GGCGCTCCTGGTCTTCTCAGGGGCCCAGGAGAAATCGGTTCGGGATTTCTTCCAGAAGGGGCATCCCCAGGACCTCGAAT TCGCCCGCATCAAGGAGATTGATTTCTCCGCCATCACCCGCCTCATCGTAGTCGATTGCCAGCACTCCTCCCGCATCGGC AAGTTCGGCGAACTCGCCAAAAGCGGCAGCGTCGAACTCCACATCTACGACCATCACCCAACCAGTTCCGGCGATATGGA GCCCACCGGCGGCGTCATCCGCCCCTGCGGTTCCACCACGACCATCCTGGCCGGCATGTTGATCGAGCGCGACGTCCAAG TTACCCCCTTTGAAGCCACCGTGATGATGCTGGGGATCCACGAGGACACCGGCAACCTGACGTTCCCCTCCAGCACCGCT GAAGACTACACCGTGGCCGCGTGGCTCCTGGAGCGGGGCGCTTATCTCAACGAAGTGGCCGACTCCATCGGGCGGGAGCT GACCGTCGAGCAGGTGTCGCTTCTAAACGACCTGCTGGTGTCGCTTAAGACCACCACCCTAAAGGGGGTCGACGTCTCGA TAGCCCACGCCTCGGTCGACCGCTACATAGGGGACATCGCCACCCTGGCGCACATGATCCGCGACATGGAGAACCTGCAG GCGCTTTTCCTCGTGGTCGGGATGGAGGACCGGGTCTTCGTCATCGCCAGGAGCCGGGTGCCGGAGGTGCGGGTAGGGGA GATCCTGCATGAACTGGGCGGGGGAGGGCACGCCACGGCCGCCTCGGCCACGGTGCGCGGGCTCACCCTGATCCAGGTGC TGGAGCGGCTGGACGCGGTGCTCAGGCGCCGGGTGGACCCAAGGCGGGTGGCGCGCGACATCATGTCGTCGCCGGTAAAG ACCATATCCCCCGACTGCAGCATCGAGGAGGCGCGGGAGCGCCTGGTGCGCTACAACGTAAGCGCCATGCCGGTCATATC AGAAGAGGGGGTGCTCGGGATCATCTCCAGGAAGACTGTGGAGAAGGCGCTCTACCACAACCTGAACCAGGTGCCGGTGT CGGATTACATGCACTCCGAGTTCCACGTCGCCTCGCCCGATACCCCCATCACCGAGATCCAAAGTTACATGGTCGGGGGG GACGCCCGCCTGGTCCCGGTGGTCTCCGAGCTGGGGTTGATTGGAGTGATCACTCGCACCGATCTGCTCCGCTACAGCTT AGGGGGCGAGGCGCTTTACGATCTGTCGCGCGACGCACTCCAGGTGAAGAGCCGGGAGGTGGAGGCGCTGATGAACAAGC ACCTCCCGCAGCGCACCACCGTCATCCTGCACGACCTAGGGCGCGTCGGGGACCAGCTCGACCTCACCGTCTACGCGGTC GGAGGCTTCGTCCGCGACCTGCTTTTAGATATCCAGAACATGGACATCGACGTGACGGTGGACGGCGACGGCATCCTCTT CGCCGAGACCTTCGCCTCCCAATTCGGCTGCCGGGTGAAAAGCCACCAGAAGTTCGGCACCGCGGTGATCGTCTTCCCGG ACGGCTTCAAGATCGACGTCGCCAGCACCCGTCTGGAATACTACGTCTCCCCCGGCGCGCTCCCTACCGTGGAGCGCTCT TCGCTCAAGATGGACCTGTATCGGCGCGACTTCACCGTCAACACCCTCGCCATTGCCTTGAACGGCGACTCCTTCGGCAA GCTCATCGATTACTTCGGGGCCTACCGGGACCTGCAGTCGAGGGTGATCCGGGTGCTGCACAACCTCTCCTTTGTCGAGG ACCCGACCCGCGTCTTCAGGGCCATCCGTTTCGAGCAGAGGCTTAACTTCAAGATCGCCAAGCACACCGAGGACCTGATC AAGAACGCGGTGAAGATGGAATTCCTGGAAAAGCTCGGAGGGCGGAGGCTCCTCGCTGAGCTGGTTCAGATCCTGAGGGA GAAGGAGCCGCTCAAGGGAGTCGGGCGCATGGCGTCGCTTGGGCTTTTGCGTTTCATTCACCCGGGCGTCGAACTGACCC CCGCCATGCAGGTAGCGCTGGAGGAAACCCGCTACGTCGTCTCCTGGTTCGATCTCCTCTACCTGGAACGCCCTTACGAA AGCTGGTCGGTCTATTTCCTGACCCTGTGCGAGGGGCTCACCGAAGAACAGTTCTGGGGAACCTGCACCCGCCTCGCCGT CGCCGAGCATTACAAGGAGAGGCTGGTGGAGATGCGCCGGCAGAGCGAGGAGCTGATCGGAAACCTGGAAAGAAAGCTGG CGCGTTCCGAGAAGGTCGACAACAGCGAGATCTACTTCACGCTCAGGGGGCTTCCAGTCGAGGTGCTCCTCTACCACATG GCCAAAAGCCGTAGCGCCGAGGTAAAGCGGTGCATCTCACTTTACTTCACCAAGCTCGACGGCATGCATCCCCAGATCGG CGGTGAGGATCTAAAGGAACTCGGCGTAGAACCGGGACCGCTGTACCGGGAGTTGCTGGACCTGGTTTTGAGCGCGCGGT TGAACGGTAAGGTCGCGAGCCGCGAAGACGAGATCCAGTTGGTGCGCGAGGTGTTGGAGGGGGTGTAG
Upstream 100 bases:
>100_bases TGGGGGCTACCTCCAGCAGGCTTATCTGCTACACCAACAGCGGCGAGGTGAACGGCGACCTCAAGGCAGTAGTGGCGTAC GCCGCAATCACGGTCTCTTG
Downstream 100 bases:
>100_bases CTTTTTTGCCACAGTACCGCTTTTTCACGTTATTTGGCCAAGTGGCCGTTTTGTAACCGTTTTGACCGAACAGCGCCCGC AAGGTGTTGCGATTAGGGCA
Product: adenosine-specific tRNA nucleotidyltransferase
Products: NA
Alternate protein names: tRNA CCA-pyrophosphorylase; tRNA adenylyl-/cytidylyl- transferase; tRNA nucleotidyltransferase; tRNA-NT [H]
Number of amino acids: Translated: 875; Mature: 875
Protein sequence:
>875_residues MDVITTHLNADFDCIGSMVAAKKLYPEALLVFSGAQEKSVRDFFQKGHPQDLEFARIKEIDFSAITRLIVVDCQHSSRIG KFGELAKSGSVELHIYDHHPTSSGDMEPTGGVIRPCGSTTTILAGMLIERDVQVTPFEATVMMLGIHEDTGNLTFPSSTA EDYTVAAWLLERGAYLNEVADSIGRELTVEQVSLLNDLLVSLKTTTLKGVDVSIAHASVDRYIGDIATLAHMIRDMENLQ ALFLVVGMEDRVFVIARSRVPEVRVGEILHELGGGGHATAASATVRGLTLIQVLERLDAVLRRRVDPRRVARDIMSSPVK TISPDCSIEEARERLVRYNVSAMPVISEEGVLGIISRKTVEKALYHNLNQVPVSDYMHSEFHVASPDTPITEIQSYMVGG DARLVPVVSELGLIGVITRTDLLRYSLGGEALYDLSRDALQVKSREVEALMNKHLPQRTTVILHDLGRVGDQLDLTVYAV GGFVRDLLLDIQNMDIDVTVDGDGILFAETFASQFGCRVKSHQKFGTAVIVFPDGFKIDVASTRLEYYVSPGALPTVERS SLKMDLYRRDFTVNTLAIALNGDSFGKLIDYFGAYRDLQSRVIRVLHNLSFVEDPTRVFRAIRFEQRLNFKIAKHTEDLI KNAVKMEFLEKLGGRRLLAELVQILREKEPLKGVGRMASLGLLRFIHPGVELTPAMQVALEETRYVVSWFDLLYLERPYE SWSVYFLTLCEGLTEEQFWGTCTRLAVAEHYKERLVEMRRQSEELIGNLERKLARSEKVDNSEIYFTLRGLPVEVLLYHM AKSRSAEVKRCISLYFTKLDGMHPQIGGEDLKELGVEPGPLYRELLDLVLSARLNGKVASREDEIQLVREVLEGV
Sequences:
>Translated_875_residues MDVITTHLNADFDCIGSMVAAKKLYPEALLVFSGAQEKSVRDFFQKGHPQDLEFARIKEIDFSAITRLIVVDCQHSSRIG KFGELAKSGSVELHIYDHHPTSSGDMEPTGGVIRPCGSTTTILAGMLIERDVQVTPFEATVMMLGIHEDTGNLTFPSSTA EDYTVAAWLLERGAYLNEVADSIGRELTVEQVSLLNDLLVSLKTTTLKGVDVSIAHASVDRYIGDIATLAHMIRDMENLQ ALFLVVGMEDRVFVIARSRVPEVRVGEILHELGGGGHATAASATVRGLTLIQVLERLDAVLRRRVDPRRVARDIMSSPVK TISPDCSIEEARERLVRYNVSAMPVISEEGVLGIISRKTVEKALYHNLNQVPVSDYMHSEFHVASPDTPITEIQSYMVGG DARLVPVVSELGLIGVITRTDLLRYSLGGEALYDLSRDALQVKSREVEALMNKHLPQRTTVILHDLGRVGDQLDLTVYAV GGFVRDLLLDIQNMDIDVTVDGDGILFAETFASQFGCRVKSHQKFGTAVIVFPDGFKIDVASTRLEYYVSPGALPTVERS SLKMDLYRRDFTVNTLAIALNGDSFGKLIDYFGAYRDLQSRVIRVLHNLSFVEDPTRVFRAIRFEQRLNFKIAKHTEDLI KNAVKMEFLEKLGGRRLLAELVQILREKEPLKGVGRMASLGLLRFIHPGVELTPAMQVALEETRYVVSWFDLLYLERPYE SWSVYFLTLCEGLTEEQFWGTCTRLAVAEHYKERLVEMRRQSEELIGNLERKLARSEKVDNSEIYFTLRGLPVEVLLYHM AKSRSAEVKRCISLYFTKLDGMHPQIGGEDLKELGVEPGPLYRELLDLVLSARLNGKVASREDEIQLVREVLEGV >Mature_875_residues MDVITTHLNADFDCIGSMVAAKKLYPEALLVFSGAQEKSVRDFFQKGHPQDLEFARIKEIDFSAITRLIVVDCQHSSRIG KFGELAKSGSVELHIYDHHPTSSGDMEPTGGVIRPCGSTTTILAGMLIERDVQVTPFEATVMMLGIHEDTGNLTFPSSTA EDYTVAAWLLERGAYLNEVADSIGRELTVEQVSLLNDLLVSLKTTTLKGVDVSIAHASVDRYIGDIATLAHMIRDMENLQ ALFLVVGMEDRVFVIARSRVPEVRVGEILHELGGGGHATAASATVRGLTLIQVLERLDAVLRRRVDPRRVARDIMSSPVK TISPDCSIEEARERLVRYNVSAMPVISEEGVLGIISRKTVEKALYHNLNQVPVSDYMHSEFHVASPDTPITEIQSYMVGG DARLVPVVSELGLIGVITRTDLLRYSLGGEALYDLSRDALQVKSREVEALMNKHLPQRTTVILHDLGRVGDQLDLTVYAV GGFVRDLLLDIQNMDIDVTVDGDGILFAETFASQFGCRVKSHQKFGTAVIVFPDGFKIDVASTRLEYYVSPGALPTVERS SLKMDLYRRDFTVNTLAIALNGDSFGKLIDYFGAYRDLQSRVIRVLHNLSFVEDPTRVFRAIRFEQRLNFKIAKHTEDLI KNAVKMEFLEKLGGRRLLAELVQILREKEPLKGVGRMASLGLLRFIHPGVELTPAMQVALEETRYVVSWFDLLYLERPYE SWSVYFLTLCEGLTEEQFWGTCTRLAVAEHYKERLVEMRRQSEELIGNLERKLARSEKVDNSEIYFTLRGLPVEVLLYHM AKSRSAEVKRCISLYFTKLDGMHPQIGGEDLKELGVEPGPLYRELLDLVLSARLNGKVASREDEIQLVREVLEGV
Specific function: Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing
COG id: COG0617
COG function: function code J; tRNA nucleotidyltransferase/poly(A) polymerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. Bacterial CCA-adding enzyme type 3 subfamily [H]
Homologues:
Organism=Escherichia coli, GI87081691, Length=252, Percent_Identity=27.7777777777778, Blast_Score=76, Evalue=1e-14, Organism=Escherichia coli, GI1789436, Length=285, Percent_Identity=27.719298245614, Blast_Score=72, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023068 - InterPro: IPR002646 [H]
Pfam domain/function: PF01743 PolyA_pol [H]
EC number: =2.7.7.21; =2.7.7.25 [H]
Molecular weight: Translated: 97947; Mature: 97947
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVITTHLNADFDCIGSMVAAKKLYPEALLVFSGAQEKSVRDFFQKGHPQDLEFARIKEI CCEEEECCCCCHHHHHHHHHHHHHCHHHEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHC DFSAITRLIVVDCQHSSRIGKFGELAKSGSVELHIYDHHPTSSGDMEPTGGVIRPCGSTT CHHHHHHHHEEECCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCHH TILAGMLIERDVQVTPFEATVMMLGIHEDTGNLTFPSSTAEDYTVAAWLLERGAYLNEVA HHHHHHHHHCCCEECCCEEEEEEEEEEECCCCEECCCCCCCHHHHHHHHHHCCCHHHHHH DSIGRELTVEQVSLLNDLLVSLKTTTLKGVDVSIAHASVDRYIGDIATLAHMIRDMENLQ HHHCCCCHHHHHHHHHHHHHHHHHHEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH ALFLVVGMEDRVFVIARSRVPEVRVGEILHELGGGGHATAASATVRGLTLIQVLERLDAV EEEEEECCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH LRRRVDPRRVARDIMSSPVKTISPDCSIEEARERLVRYNVSAMPVISEEGVLGIISRKTV HHHCCCHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHCCCCCCCEECCCCCEEHHHHHHH EKALYHNLNQVPVSDYMHSEFHVASPDTPITEIQSYMVGGDARLVPVVSELGLIGVITRT HHHHHCCCCCCCHHHHHCCCEEECCCCCCHHHHHHHHCCCCCEEHHHHHHCCCEEEHHHH DLLRYSLGGEALYDLSRDALQVKSREVEALMNKHLPQRTTVILHDLGRVGDQLDLTVYAV HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEEH GGFVRDLLLDIQNMDIDVTVDGDGILFAETFASQFGCRVKSHQKFGTAVIVFPDGFKIDV HHHHHHHHHHHHCCCEEEEECCCCEEEHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEE ASTRLEYYVSPGALPTVERSSLKMDLYRRDFTVNTLAIALNGDSFGKLIDYFGAYRDLQS ECCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHH RVIRVLHNLSFVEDPTRVFRAIRFEQRLNFKIAKHTEDLIKNAVKMEFLEKLGGRRLLAE HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHHHH LVQILREKEPLKGVGRMASLGLLRFIHPGVELTPAMQVALEETRYVVSWFDLLYLERPYE HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC SWSVYFLTLCEGLTEEQFWGTCTRLAVAEHYKERLVEMRRQSEELIGNLERKLARSEKVD CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC NSEIYFTLRGLPVEVLLYHMAKSRSAEVKRCISLYFTKLDGMHPQIGGEDLKELGVEPGP CCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCH LYRELLDLVLSARLNGKVASREDEIQLVREVLEGV HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MDVITTHLNADFDCIGSMVAAKKLYPEALLVFSGAQEKSVRDFFQKGHPQDLEFARIKEI CCEEEECCCCCHHHHHHHHHHHHHCHHHEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHC DFSAITRLIVVDCQHSSRIGKFGELAKSGSVELHIYDHHPTSSGDMEPTGGVIRPCGSTT CHHHHHHHHEEECCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCHH TILAGMLIERDVQVTPFEATVMMLGIHEDTGNLTFPSSTAEDYTVAAWLLERGAYLNEVA HHHHHHHHHCCCEECCCEEEEEEEEEEECCCCEECCCCCCCHHHHHHHHHHCCCHHHHHH DSIGRELTVEQVSLLNDLLVSLKTTTLKGVDVSIAHASVDRYIGDIATLAHMIRDMENLQ HHHCCCCHHHHHHHHHHHHHHHHHHEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH ALFLVVGMEDRVFVIARSRVPEVRVGEILHELGGGGHATAASATVRGLTLIQVLERLDAV EEEEEECCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH LRRRVDPRRVARDIMSSPVKTISPDCSIEEARERLVRYNVSAMPVISEEGVLGIISRKTV HHHCCCHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHCCCCCCCEECCCCCEEHHHHHHH EKALYHNLNQVPVSDYMHSEFHVASPDTPITEIQSYMVGGDARLVPVVSELGLIGVITRT HHHHHCCCCCCCHHHHHCCCEEECCCCCCHHHHHHHHCCCCCEEHHHHHHCCCEEEHHHH DLLRYSLGGEALYDLSRDALQVKSREVEALMNKHLPQRTTVILHDLGRVGDQLDLTVYAV HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEEH GGFVRDLLLDIQNMDIDVTVDGDGILFAETFASQFGCRVKSHQKFGTAVIVFPDGFKIDV HHHHHHHHHHHHCCCEEEEECCCCEEEHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEE ASTRLEYYVSPGALPTVERSSLKMDLYRRDFTVNTLAIALNGDSFGKLIDYFGAYRDLQS ECCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHH RVIRVLHNLSFVEDPTRVFRAIRFEQRLNFKIAKHTEDLIKNAVKMEFLEKLGGRRLLAE HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHHHH LVQILREKEPLKGVGRMASLGLLRFIHPGVELTPAMQVALEETRYVVSWFDLLYLERPYE HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC SWSVYFLTLCEGLTEEQFWGTCTRLAVAEHYKERLVEMRRQSEELIGNLERKLARSEKVD CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC NSEIYFTLRGLPVEVLLYHMAKSRSAEVKRCISLYFTKLDGMHPQIGGEDLKELGVEPGP CCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCH LYRELLDLVLSARLNGKVASREDEIQLVREVLEGV HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA