| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is glgP [H]
Identifier: 197118616
GI number: 197118616
Start: 2600021
End: 2602549
Strand: Reverse
Name: glgP [H]
Synonym: Gbem_2235
Alternate gene names: 197118616
Gene position: 2602549-2600021 (Counterclockwise)
Preceding gene: 197118617
Following gene: 197118615
Centisome position: 56.39
GC content: 63.23
Gene sequence:
>2529_bases ATGGCGAATACCGAAACTGACATCCTTTGCGCCCCCGGACTTGAAGACCTGCCTCCTCTGCCGATGGACGCGAAGAGCCT TGTGAACGATTTCACCCACCATTACTTTCATCACCTCGGAAGAGACAGGAATTGCCGCAACATCCGCTACAACTACCAGG CACTGGCCTTCACGGTCCGGGAGCGCCTGATCGAGCGCTGGAACAACACCCGCTACGCCTACATCGATGCAGATACCAAG ACCGGTTACTACCTCTCGCTCGAATTCCTCATGGGGCGGGCGCTGGGAAACGCCATGCTGAACCTGGGGCTTGACGACGC CGCCCACAGGGCGATGGAGCAGCTCGGCATCCGCCTGGAGCAGGTGGCGGAGGAGGAGATCGACGCGGGGCTCGGCAACG GCGGCCTGGGAAGGCTCGCCGCCTGTTTCCTCGACAGCTGCGCCACCTTGCAGCTCCCGGTGATGGGGTACGGCATCCGC TATGAGTACGGCATGTTCCGCCAGCGCATCGAAAACGGCAGGCAGGTCGAGGAGCCGGACCACTGGCTGCGCGACGGCAA CCCCTGGGAAATGGAGCGCCCCGAGTACACCCAGCGCATCCGCTTCGGCGGGCGGACCGAGTGCAGCCGCAACGACGACG GGAGCCTCACCCACCGCTGGCTCGACACCCACGACATCCTCGCCGTTCCCTACGACCTCCCCATCCCGGGGTACAAAAAC GGAACCGTCAACACGCTTAGGCTCTGGAAATCTGCCGCCACCGACGCCTTCGACCTCCAAGAGTTCAACGCCGGGAGCTA CACCGAATCGGTGGCCATGAAGAACGAGGCGGAGAACATCACCATGGTGCTCTACCCCAACGACGCCAGCGAGAACGGCA AGGAGCTGAGGCTCAGGCAGCAGTACTTCCTCGCCTCGGCGAGCCTGCAGGACGTCCTTGCCCGCTGGAAGCAACGGCAG GGAGAGGTGTTCGGCCACTTCGCCGAGAGGAACGTGTTCCAGCTGAACGACACCCACCCAAGCTGCGCCGTCCCCGAGCT GATGCGGCTGCTCATGGACGAAAAGGGTATGGGATGGGACGAGGCGTGGTCGGTCACCACCCGCACCATGGCCTACACCA ATCACACCCTGCTCCCCGAGGCGCTGGAGAAGTGGCCGGTGCCGCTTTTCAGGCAGCTTTTGCCGCGCCTTCTGGAGATC ATCCTGGAGATAAACGCGCGCTTTCTTGCCGAGGTCTCCAGCCGCTGGCCCGGCGACAACGAACGGCTGCGCAACATGTC CATCATCGAGGAGGGGCCGGTGCCGCAGGTGCGCATGGCCTACCTCGCCATCGTGGGGAGCTTCTCGGTGAACGGCGTCG CCGCGCTCCACTCGCAACTCTTGGTGCAGGGGCTTTTCAGGGACTTCTACGAACTTTGGCCGGAGAAGTTCAACAACAAG ACCAACGGCGTCACCCCGCGCCGCTGGCTGGTCAAGTGCAACCCCGGGCTTGCCTCGCTCATTGCCGGCAGGATAGGGGA GGGGTTCATCGCCGACCTGGGAAGGATCTCGCAGGTGGCACCCCTGGCTGACGATCCCGAATTCCGCAGTAAATGGCACG CCGTGAAAAAGGCCAACAAGGAGCGGCTCGCCGCAGTTGTCCTCGACCAGTGCGGGGTCCCCTTCAACCCTGAGAGCCTC TTCGACGTCCAGGTAAAAAGGATTCACGAGTACAAGCGCCAGCTCCTGAACGTGCTGCACGTGATCCATCTCTACGACAG GATCAAGCGCGGCGACACCGGGGAATGGACCAACCGCTGCGTGCTGATCGGCGGCAAGGCGGCGCCGGGGTACCACATGG CGAAACTGATCATCAAGCTGATCGGCAACGTCGCCAAGGTCGTGAACGAGGATCCACTGGTCGGGGACCGGCTCAAGGTC GCGTTCTTCCCCAACTACCGGGTGACCGCCATGGAGGTGATCTGCCCGGGAACCGACCTCTCCGAGCAGATCTCCACCGC CGGCAAGGAAGCATCCGGGACCGGAAACATGAAGTTCATGATGAACGGCGCCATCACCATCGGCACGCTGGACGGCGCCA ACATCGAGATCCGGGAGGAGGTGGGGGACGAGAACTTCTTCGTCTTCGGCCTGACCGCCGAAGAGGTGGAGCATCAGCGC CGCAGCTACAACCCGGCCGGCATCATCGCAGCCGATCCCGACCTGAACCGGGTGCTGCAGTTATTGACCAGCGGCCACTT CAACATGTTCGAGGCGGGGCTCTTCGACCCCATCATCCAGGCGATCGTGAACCCGGGCGATCCGTGGATGGTCGCGGCTG ACTTCCGCAGCTACGTGCAGGCGCAAAAGCGCGCGGCCGCAGCCTATCTGGACCGGGAAGCATGGACCCGGATGAGCATC GTCAACAGCGCGCGCAGCGGCAAGTTTTCCACCGACCGGACCATAGCCGAGTACAACGAGGAGATCTGGCGCCTGAGGCC GGTACGCCCCTTGCCGCTCGTACCGTCGGAGCCTAATGGGAAGCTCTGA
Upstream 100 bases:
>100_bases GTTATCGTCGCCTCGAACCGAATAGTAGGTACACTGTAGCGGTTGCCGAATCCGGATGTCGGATTCCAGTTACCAAATTC CAGTATAAGGAGCATGACCG
Downstream 100 bases:
>100_bases CCGTTGGGCGAGCGGGACTCTTCGCTTTCATCGCCGGCCCGTACCGACGTGTAACTCTTTTTTCGCTTTAGAATTCGCCT ATCCTGCCGATAATCAACAA
Product: glucan phosphorylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 842; Mature: 841
Protein sequence:
>842_residues MANTETDILCAPGLEDLPPLPMDAKSLVNDFTHHYFHHLGRDRNCRNIRYNYQALAFTVRERLIERWNNTRYAYIDADTK TGYYLSLEFLMGRALGNAMLNLGLDDAAHRAMEQLGIRLEQVAEEEIDAGLGNGGLGRLAACFLDSCATLQLPVMGYGIR YEYGMFRQRIENGRQVEEPDHWLRDGNPWEMERPEYTQRIRFGGRTECSRNDDGSLTHRWLDTHDILAVPYDLPIPGYKN GTVNTLRLWKSAATDAFDLQEFNAGSYTESVAMKNEAENITMVLYPNDASENGKELRLRQQYFLASASLQDVLARWKQRQ GEVFGHFAERNVFQLNDTHPSCAVPELMRLLMDEKGMGWDEAWSVTTRTMAYTNHTLLPEALEKWPVPLFRQLLPRLLEI ILEINARFLAEVSSRWPGDNERLRNMSIIEEGPVPQVRMAYLAIVGSFSVNGVAALHSQLLVQGLFRDFYELWPEKFNNK TNGVTPRRWLVKCNPGLASLIAGRIGEGFIADLGRISQVAPLADDPEFRSKWHAVKKANKERLAAVVLDQCGVPFNPESL FDVQVKRIHEYKRQLLNVLHVIHLYDRIKRGDTGEWTNRCVLIGGKAAPGYHMAKLIIKLIGNVAKVVNEDPLVGDRLKV AFFPNYRVTAMEVICPGTDLSEQISTAGKEASGTGNMKFMMNGAITIGTLDGANIEIREEVGDENFFVFGLTAEEVEHQR RSYNPAGIIAADPDLNRVLQLLTSGHFNMFEAGLFDPIIQAIVNPGDPWMVAADFRSYVQAQKRAAAAYLDREAWTRMSI VNSARSGKFSTDRTIAEYNEEIWRLRPVRPLPLVPSEPNGKL
Sequences:
>Translated_842_residues MANTETDILCAPGLEDLPPLPMDAKSLVNDFTHHYFHHLGRDRNCRNIRYNYQALAFTVRERLIERWNNTRYAYIDADTK TGYYLSLEFLMGRALGNAMLNLGLDDAAHRAMEQLGIRLEQVAEEEIDAGLGNGGLGRLAACFLDSCATLQLPVMGYGIR YEYGMFRQRIENGRQVEEPDHWLRDGNPWEMERPEYTQRIRFGGRTECSRNDDGSLTHRWLDTHDILAVPYDLPIPGYKN GTVNTLRLWKSAATDAFDLQEFNAGSYTESVAMKNEAENITMVLYPNDASENGKELRLRQQYFLASASLQDVLARWKQRQ GEVFGHFAERNVFQLNDTHPSCAVPELMRLLMDEKGMGWDEAWSVTTRTMAYTNHTLLPEALEKWPVPLFRQLLPRLLEI ILEINARFLAEVSSRWPGDNERLRNMSIIEEGPVPQVRMAYLAIVGSFSVNGVAALHSQLLVQGLFRDFYELWPEKFNNK TNGVTPRRWLVKCNPGLASLIAGRIGEGFIADLGRISQVAPLADDPEFRSKWHAVKKANKERLAAVVLDQCGVPFNPESL FDVQVKRIHEYKRQLLNVLHVIHLYDRIKRGDTGEWTNRCVLIGGKAAPGYHMAKLIIKLIGNVAKVVNEDPLVGDRLKV AFFPNYRVTAMEVICPGTDLSEQISTAGKEASGTGNMKFMMNGAITIGTLDGANIEIREEVGDENFFVFGLTAEEVEHQR RSYNPAGIIAADPDLNRVLQLLTSGHFNMFEAGLFDPIIQAIVNPGDPWMVAADFRSYVQAQKRAAAAYLDREAWTRMSI VNSARSGKFSTDRTIAEYNEEIWRLRPVRPLPLVPSEPNGKL >Mature_841_residues ANTETDILCAPGLEDLPPLPMDAKSLVNDFTHHYFHHLGRDRNCRNIRYNYQALAFTVRERLIERWNNTRYAYIDADTKT GYYLSLEFLMGRALGNAMLNLGLDDAAHRAMEQLGIRLEQVAEEEIDAGLGNGGLGRLAACFLDSCATLQLPVMGYGIRY EYGMFRQRIENGRQVEEPDHWLRDGNPWEMERPEYTQRIRFGGRTECSRNDDGSLTHRWLDTHDILAVPYDLPIPGYKNG TVNTLRLWKSAATDAFDLQEFNAGSYTESVAMKNEAENITMVLYPNDASENGKELRLRQQYFLASASLQDVLARWKQRQG EVFGHFAERNVFQLNDTHPSCAVPELMRLLMDEKGMGWDEAWSVTTRTMAYTNHTLLPEALEKWPVPLFRQLLPRLLEII LEINARFLAEVSSRWPGDNERLRNMSIIEEGPVPQVRMAYLAIVGSFSVNGVAALHSQLLVQGLFRDFYELWPEKFNNKT NGVTPRRWLVKCNPGLASLIAGRIGEGFIADLGRISQVAPLADDPEFRSKWHAVKKANKERLAAVVLDQCGVPFNPESLF DVQVKRIHEYKRQLLNVLHVIHLYDRIKRGDTGEWTNRCVLIGGKAAPGYHMAKLIIKLIGNVAKVVNEDPLVGDRLKVA FFPNYRVTAMEVICPGTDLSEQISTAGKEASGTGNMKFMMNGAITIGTLDGANIEIREEVGDENFFVFGLTAEEVEHQRR SYNPAGIIAADPDLNRVLQLLTSGHFNMFEAGLFDPIIQAIVNPGDPWMVAADFRSYVQAQKRAAAAYLDREAWTRMSIV NSARSGKFSTDRTIAEYNEEIWRLRPVRPLPLVPSEPNGKL
Specific function: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties [
COG id: COG0058
COG function: function code G; Glucan phosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycogen phosphorylase family [H]
Homologues:
Organism=Homo sapiens, GI5032009, Length=823, Percent_Identity=53.4629404617254, Blast_Score=847, Evalue=0.0, Organism=Homo sapiens, GI21361370, Length=826, Percent_Identity=52.9055690072639, Blast_Score=830, Evalue=0.0, Organism=Homo sapiens, GI71037379, Length=809, Percent_Identity=51.9159456118665, Blast_Score=807, Evalue=0.0, Organism=Homo sapiens, GI255653002, Length=809, Percent_Identity=49.4437577255871, Blast_Score=751, Evalue=0.0, Organism=Homo sapiens, GI257900462, Length=678, Percent_Identity=53.2448377581121, Blast_Score=729, Evalue=0.0, Organism=Escherichia coli, GI2367228, Length=822, Percent_Identity=48.4184914841849, Blast_Score=766, Evalue=0.0, Organism=Escherichia coli, GI48994936, Length=772, Percent_Identity=47.020725388601, Blast_Score=722, Evalue=0.0, Organism=Caenorhabditis elegans, GI32566204, Length=807, Percent_Identity=52.912019826518, Blast_Score=831, Evalue=0.0, Organism=Caenorhabditis elegans, GI17564550, Length=807, Percent_Identity=52.912019826518, Blast_Score=830, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6325418, Length=843, Percent_Identity=45.7888493475682, Blast_Score=700, Evalue=0.0, Organism=Drosophila melanogaster, GI78706832, Length=818, Percent_Identity=51.8337408312958, Blast_Score=827, Evalue=0.0, Organism=Drosophila melanogaster, GI24581010, Length=818, Percent_Identity=51.8337408312958, Blast_Score=827, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011833 - InterPro: IPR000811 [H]
Pfam domain/function: PF00343 Phosphorylase [H]
EC number: =2.4.1.1 [H]
Molecular weight: Translated: 95286; Mature: 95155
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: PS00102 PHOSPHORYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANTETDILCAPGLEDLPPLPMDAKSLVNDFTHHYFHHLGRDRNCRNIRYNYQALAFTVR CCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHH ERLIERWNNTRYAYIDADTKTGYYLSLEFLMGRALGNAMLNLGLDDAAHRAMEQLGIRLE HHHHHHHCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHH QVAEEEIDAGLGNGGLGRLAACFLDSCATLQLPVMGYGIRYEYGMFRQRIENGRQVEEPD HHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEHCCCCEEEHHHHHHHHHHCCCCCCCCH HWLRDGNPWEMERPEYTQRIRFGGRTECSRNDDGSLTHRWLDTHDILAVPYDLPIPGYKN HHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCC GTVNTLRLWKSAATDAFDLQEFNAGSYTESVAMKNEAENITMVLYPNDASENGKELRLRQ CCCHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHH QYFLASASLQDVLARWKQRQGEVFGHFAERNVFQLNDTHPSCAVPELMRLLMDEKGMGWD HHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCC EAWSVTTRTMAYTNHTLLPEALEKWPVPLFRQLLPRLLEIILEINARFLAEVSSRWPGDN HHHHHHHHEEEECCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH ERLRNMSIIEEGPVPQVRMAYLAIVGSFSVNGVAALHSQLLVQGLFRDFYELWPEKFNNK HHHCCCHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TNGVTPRRWLVKCNPGLASLIAGRIGEGFIADLGRISQVAPLADDPEFRSKWHAVKKANK CCCCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCH ERLAAVVLDQCGVPFNPESLFDVQVKRIHEYKRQLLNVLHVIHLYDRIKRGDTGEWTNRC HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE VLIGGKAAPGYHMAKLIIKLIGNVAKVVNEDPLVGDRLKVAFFPNYRVTAMEVICPGTDL EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECCCCH SEQISTAGKEASGTGNMKFMMNGAITIGTLDGANIEIREEVGDENFFVFGLTAEEVEHQR HHHHHHCCCCCCCCCCEEEEEECEEEEEECCCCCEEEHHHCCCCCEEEEECCHHHHHHHH RSYNPAGIIAADPDLNRVLQLLTSGHFNMFEAGLFDPIIQAIVNPGDPWMVAADFRSYVQ HCCCCCEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHH AQKRAAAAYLDREAWTRMSIVNSARSGKFSTDRTIAEYNEEIWRLRPVRPLPLVPSEPNG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCCCCC KL CC >Mature Secondary Structure ANTETDILCAPGLEDLPPLPMDAKSLVNDFTHHYFHHLGRDRNCRNIRYNYQALAFTVR CCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHH ERLIERWNNTRYAYIDADTKTGYYLSLEFLMGRALGNAMLNLGLDDAAHRAMEQLGIRLE HHHHHHHCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHH QVAEEEIDAGLGNGGLGRLAACFLDSCATLQLPVMGYGIRYEYGMFRQRIENGRQVEEPD HHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEHCCCCEEEHHHHHHHHHHCCCCCCCCH HWLRDGNPWEMERPEYTQRIRFGGRTECSRNDDGSLTHRWLDTHDILAVPYDLPIPGYKN HHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCC GTVNTLRLWKSAATDAFDLQEFNAGSYTESVAMKNEAENITMVLYPNDASENGKELRLRQ CCCHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHH QYFLASASLQDVLARWKQRQGEVFGHFAERNVFQLNDTHPSCAVPELMRLLMDEKGMGWD HHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCC EAWSVTTRTMAYTNHTLLPEALEKWPVPLFRQLLPRLLEIILEINARFLAEVSSRWPGDN HHHHHHHHEEEECCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH ERLRNMSIIEEGPVPQVRMAYLAIVGSFSVNGVAALHSQLLVQGLFRDFYELWPEKFNNK HHHCCCHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TNGVTPRRWLVKCNPGLASLIAGRIGEGFIADLGRISQVAPLADDPEFRSKWHAVKKANK CCCCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCH ERLAAVVLDQCGVPFNPESLFDVQVKRIHEYKRQLLNVLHVIHLYDRIKRGDTGEWTNRC HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE VLIGGKAAPGYHMAKLIIKLIGNVAKVVNEDPLVGDRLKVAFFPNYRVTAMEVICPGTDL EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECCCCH SEQISTAGKEASGTGNMKFMMNGAITIGTLDGANIEIREEVGDENFFVFGLTAEEVEHQR HHHHHHCCCCCCCCCCEEEEEECEEEEEECCCCCEEEHHHCCCCCEEEEECCHHHHHHHH RSYNPAGIIAADPDLNRVLQLLTSGHFNMFEAGLFDPIIQAIVNPGDPWMVAADFRSYVQ HCCCCCEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHH AQKRAAAAYLDREAWTRMSIVNSARSGKFSTDRTIAEYNEEIWRLRPVRPLPLVPSEPNG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCCCCC KL CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]