| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is yaiI [C]
Identifier: 197118602
GI number: 197118602
Start: 2585746
End: 2586210
Strand: Reverse
Name: yaiI [C]
Synonym: Gbem_2221
Alternate gene names: 197118602
Gene position: 2586210-2585746 (Counterclockwise)
Preceding gene: 197118604
Following gene: 197118601
Centisome position: 56.04
GC content: 59.78
Gene sequence:
>465_bases ATGAAGATTTGGATTGATGCAGATGCCTGTCCCCGAGTGGTAAAGGACATTGTGTTCCGCGCTTCAGAGCGTTTGAAAGT GCCGGTTTGTCTGGTAGCCAACACCGACCTTTCGCGCGCTCACACCTCGCTGATAACTTCCGTACGTGTCAAGGCAGGCT TTGACGTAGCCGACGACTACATAGCCGAGAATGCCGAGGCATGCGACCTCGTCATCACCGCCGACATTCCGCTTGCGGCC CGGGTGGTCGAGAAGGGAGGAGTTGCGCTTGATCCTCGCGGCGAGCTCTACACCGAAGAGAATGTCGGCGAGCGGCTTTC CTACCGTAATCTGATGGCCGAGTTGCGGACCGACGGGCTGCTGGTGGGGGGACCTGCCCAGTTGGGCCTCACCGACCGCA ATCGTTTCGCCTCCGCCCTCGACCGACTGCTCACCAAGATGGTACGCGAGCACCGTTCCCAGTGA
Upstream 100 bases:
>100_bases GTTGACAGGGCAGGTTCGCTGTAGTAGCGTGCAACGCTGCCTATGAGAGATTTTTTCCGCCAATCACAACGTACCGAAAG TGGTATCGCTGGAGTAGAGA
Downstream 100 bases:
>100_bases TGCATGGATTCCCCAGAGCGTTCTGCGAATTACAGAGAGCGCTGCGTCAGTCATCTAGAGCGATATGTAATTTATCGAGA GGGACGTACGAGTCATCGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 154; Mature: 154
Protein sequence:
>154_residues MKIWIDADACPRVVKDIVFRASERLKVPVCLVANTDLSRAHTSLITSVRVKAGFDVADDYIAENAEACDLVITADIPLAA RVVEKGGVALDPRGELYTEENVGERLSYRNLMAELRTDGLLVGGPAQLGLTDRNRFASALDRLLTKMVREHRSQ
Sequences:
>Translated_154_residues MKIWIDADACPRVVKDIVFRASERLKVPVCLVANTDLSRAHTSLITSVRVKAGFDVADDYIAENAEACDLVITADIPLAA RVVEKGGVALDPRGELYTEENVGERLSYRNLMAELRTDGLLVGGPAQLGLTDRNRFASALDRLLTKMVREHRSQ >Mature_154_residues MKIWIDADACPRVVKDIVFRASERLKVPVCLVANTDLSRAHTSLITSVRVKAGFDVADDYIAENAEACDLVITADIPLAA RVVEKGGVALDPRGELYTEENVGERLSYRNLMAELRTDGLLVGGPAQLGLTDRNRFASALDRLLTKMVREHRSQ
Specific function: Unknown
COG id: COG1671
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0178 family [H]
Homologues:
Organism=Escherichia coli, GI87081732, Length=151, Percent_Identity=50.3311258278146, Blast_Score=157, Evalue=2e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003791 [H]
Pfam domain/function: PF02639 DUF188 [H]
EC number: NA
Molecular weight: Translated: 16951; Mature: 16951
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIWIDADACPRVVKDIVFRASERLKVPVCLVANTDLSRAHTSLITSVRVKAGFDVADDY CEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHH IAENAEACDLVITADIPLAARVVEKGGVALDPRGELYTEENVGERLSYRNLMAELRTDGL HHCCCCCCEEEEECCCCHHHHHHHCCCEEECCCCCEECCCCHHHHHHHHHHHHHHCCCCE LVGGPAQLGLTDRNRFASALDRLLTKMVREHRSQ EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKIWIDADACPRVVKDIVFRASERLKVPVCLVANTDLSRAHTSLITSVRVKAGFDVADDY CEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHH IAENAEACDLVITADIPLAARVVEKGGVALDPRGELYTEENVGERLSYRNLMAELRTDGL HHCCCCCCEEEEECCCCHHHHHHHCCCEEECCCCCEECCCCHHHHHHHHHHHHHHCCCCE LVGGPAQLGLTDRNRFASALDRLLTKMVREHRSQ EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA