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The map label for this gene is rbcR [H]

Identifier: 197118420

GI number: 197118420

Start: 2345117

End: 2346034

Strand: Reverse

Name: rbcR [H]

Synonym: Gbem_2038

Alternate gene names: 197118420

Gene position: 2346034-2345117 (Counterclockwise)

Preceding gene: 197118426

Following gene: 197118418

Centisome position: 50.83

GC content: 60.68

Gene sequence:

>918_bases
ATGAACCTGAAACAGCTGGAGGTATTCATCAAGGTAGCCGAGAGCGGCAGCTTCTCGAAGGGGGCCGAGGCAACCTTCAT
CACCCAATCCACCGTCAGCCAGCACATCTCCGCACTGGAAAGCGAATTCGGCATGAAACTCCTGGACCGTACCGGCAAGG
GAGCACTCCCCACCGAGGGCGGGAAGATCCTGCTGGAGCGGGCACGCAAACTGGTAGAGTACGCAAAGGAAATACCGGTG
GCGCTGGCGCGCTTCAAGGGAATCGAGGAGGCAGAACTCAATATCGCGGGAAGCAGCATCCCCGGCGAATACATGATTCC
TGCCGCGCTGCCGCTTCTGATCAGCCGCTTTCCCGGCGTGACCATCGTGCTCCTGCAGGGAGACAGCCGTGACGTGTTGA
GGAAGCTTATGACGGAAGAAGTCGAGTTCGGCGTGGTCGGAGGGCGTTTCGAGGAGGAAAGTCTCGATTTCACCCCTTTG
GCCAAGGACGAGTTGGTATTGATCGCGCCTGCCGGGCACCGCTGGGCGAAGAAGAGCCGGATCACCAAGGAGGAACTCCT
GGCAGAGCCGTTCGTGCTGCGCGAGACTGGATCGGGCACAGGGAGAGCGACCGCGAAGGCGCTGCGGGAAGCGGGGTTAG
ACCCGGCGAAGCTCAAGGTCGCAGTGCACCTGGGTAGCAACGAGGCGGTGAAGCGTGCGGTGATGGCGGGAATCGGGGTT
TCCTACGTGTCCGCCGTTTCGGTGCAGCGCGAACTGGAACAGGGGGCGCTGGTCCAGGTGCGTGTGACTGAGGTGGAGAT
CAAGCGGGATTTCTTCCTGGCTACCAGGAAAGGGAGGGAGTTGTCACCTGCGGCGATCGCCTTCAAGGAGATCATGATGC
AAATGTACGCCAAAGCCTCAATCGAGGGTGGAGCGTAG

Upstream 100 bases:

>100_bases
GAAAAAAGCATGTAATCAATAATCGATTGACCCTCTAGAGTCAAATTGATAAATTCGATAAAATTAATACCTGAGATCGC
ATTTCCTAATGGAGGGAAGG

Downstream 100 bases:

>100_bases
CTTCTTTTTATCGGAATGCGCCTTTTTCTGGTTCAGGCGCTTCTCCTTGGCGCGGCGCGGCACCTTGGTCGCGACCCGTT
TCTTCGCTTTTTGCTCCCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MNLKQLEVFIKVAESGSFSKGAEATFITQSTVSQHISALESEFGMKLLDRTGKGALPTEGGKILLERARKLVEYAKEIPV
ALARFKGIEEAELNIAGSSIPGEYMIPAALPLLISRFPGVTIVLLQGDSRDVLRKLMTEEVEFGVVGGRFEEESLDFTPL
AKDELVLIAPAGHRWAKKSRITKEELLAEPFVLRETGSGTGRATAKALREAGLDPAKLKVAVHLGSNEAVKRAVMAGIGV
SYVSAVSVQRELEQGALVQVRVTEVEIKRDFFLATRKGRELSPAAIAFKEIMMQMYAKASIEGGA

Sequences:

>Translated_305_residues
MNLKQLEVFIKVAESGSFSKGAEATFITQSTVSQHISALESEFGMKLLDRTGKGALPTEGGKILLERARKLVEYAKEIPV
ALARFKGIEEAELNIAGSSIPGEYMIPAALPLLISRFPGVTIVLLQGDSRDVLRKLMTEEVEFGVVGGRFEEESLDFTPL
AKDELVLIAPAGHRWAKKSRITKEELLAEPFVLRETGSGTGRATAKALREAGLDPAKLKVAVHLGSNEAVKRAVMAGIGV
SYVSAVSVQRELEQGALVQVRVTEVEIKRDFFLATRKGRELSPAAIAFKEIMMQMYAKASIEGGA
>Mature_305_residues
MNLKQLEVFIKVAESGSFSKGAEATFITQSTVSQHISALESEFGMKLLDRTGKGALPTEGGKILLERARKLVEYAKEIPV
ALARFKGIEEAELNIAGSSIPGEYMIPAALPLLISRFPGVTIVLLQGDSRDVLRKLMTEEVEFGVVGGRFEEESLDFTPL
AKDELVLIAPAGHRWAKKSRITKEELLAEPFVLRETGSGTGRATAKALREAGLDPAKLKVAVHLGSNEAVKRAVMAGIGV
SYVSAVSVQRELEQGALVQVRVTEVEIKRDFFLATRKGRELSPAAIAFKEIMMQMYAKASIEGGA

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=288, Percent_Identity=32.9861111111111, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1790399, Length=281, Percent_Identity=25.6227758007117, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI145693105, Length=298, Percent_Identity=24.1610738255034, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787879, Length=292, Percent_Identity=28.0821917808219, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788748, Length=292, Percent_Identity=27.0547945205479, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082132, Length=293, Percent_Identity=27.3037542662116, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI157672245, Length=302, Percent_Identity=23.1788079470199, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788297, Length=171, Percent_Identity=27.4853801169591, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787530, Length=253, Percent_Identity=24.5059288537549, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788296, Length=248, Percent_Identity=26.6129032258064, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786401, Length=265, Percent_Identity=24.5283018867925, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1789204, Length=247, Percent_Identity=23.0769230769231, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1790208, Length=258, Percent_Identity=25.968992248062, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789639, Length=125, Percent_Identity=29.6, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786713, Length=280, Percent_Identity=25.7142857142857, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788887, Length=194, Percent_Identity=25.7731958762887, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790262, Length=291, Percent_Identity=24.3986254295533, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33027; Mature: 33027

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKQLEVFIKVAESGSFSKGAEATFITQSTVSQHISALESEFGMKLLDRTGKGALPTEG
CCHHHEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCC
GKILLERARKLVEYAKEIPVALARFKGIEEAELNIAGSSIPGEYMIPAALPLLISRFPGV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEECCCCCCCEEHHHHHHHHHHHCCCE
TIVLLQGDSRDVLRKLMTEEVEFGVVGGRFEEESLDFTPLAKDELVLIAPAGHRWAKKSR
EEEEEECCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHC
ITKEELLAEPFVLRETGSGTGRATAKALREAGLDPAKLKVAVHLGSNEAVKRAVMAGIGV
CCHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCHHHEEEEEEECCCHHHHHHHHHHCCH
SYVSAVSVQRELEQGALVQVRVTEVEIKRDFFLATRKGRELSPAAIAFKEIMMQMYAKAS
HHHHHHHHHHHHHCCCEEEEEEEEEEEHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHC
IEGGA
CCCCC
>Mature Secondary Structure
MNLKQLEVFIKVAESGSFSKGAEATFITQSTVSQHISALESEFGMKLLDRTGKGALPTEG
CCHHHEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCC
GKILLERARKLVEYAKEIPVALARFKGIEEAELNIAGSSIPGEYMIPAALPLLISRFPGV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEECCCCCCCEEHHHHHHHHHHHCCCE
TIVLLQGDSRDVLRKLMTEEVEFGVVGGRFEEESLDFTPLAKDELVLIAPAGHRWAKKSR
EEEEEECCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHC
ITKEELLAEPFVLRETGSGTGRATAKALREAGLDPAKLKVAVHLGSNEAVKRAVMAGIGV
CCHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCHHHEEEEEEECCCHHHHHHHHHHCCH
SYVSAVSVQRELEQGALVQVRVTEVEIKRDFFLATRKGRELSPAAIAFKEIMMQMYAKAS
HHHHHHHHHHHHHCCCEEEEEEEEEEEHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHC
IEGGA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA