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The map label for this gene is (hspc4-1 [H]

Identifier: 197118350

GI number: 197118350

Start: 2271399

End: 2271935

Strand: Direct

Name: (hspc4-1 [H]

Synonym: Gbem_1967

Alternate gene names: 197118350

Gene position: 2271399-2271935 (Clockwise)

Preceding gene: 197118349

Following gene: 308535277

Centisome position: 49.22

GC content: 57.91

Gene sequence:

>537_bases
ATGCTCGAAAAAGAACGGGATATTTTGAGACGCGACGACCGGCCGCAAAGCGAAAGACGGCAGTTAGAGCGCGAGAGTGA
GAAGGGCGAACTGCATGGGCGGCACTCCACCTCCCCCATGGCGCAGATGGAGCGGATGTTCGACGAGGTTTTCAAGAAGC
CTTTCTTCTCTCTCTGGTCGCAGAGGATGGCTGGAGGGGAGATGGAGGAGCTCTACCTGCCGGTGGATGTCTTTGAGGAA
GGGGACTCCGTGGTGGTCAAGGCAGAGATCCCGGGAATCCGCAAGGAAGACATTGACGTGCAGCTTTCCCCCGACAGCAT
CACCATCTCGGGGAAGAAGAGCAAGGCCGAGCGGACCGAACAGAAGGATTTCTACCGGGTAGAGCGCTCCTACGGCTCGT
TCATGAGAACATGCAGGCTTCCGGTGGAAACCATCACCGACACTGCGCGTGCAAGCTTCAAGGACGGCGTCTTGGAGGTG
CGGATACTGAAGAGCGAGGCGGCGACCCAGAGGGTCAAGAAACTGAACGTGGAATGA

Upstream 100 bases:

>100_bases
CAAGGGGTAGCTTTGCCTGCAGGTCGCACGGCTTGACTTTCGCGGTCGCCGAATTAAGGTTTTCCGATCTTTAAACCAAC
CTTAATAGGAGGACATCGAA

Downstream 100 bases:

>100_bases
TTTCCCCACCGGTCGGAAACGGAAATGGCCGCGGCGAAAACCGCGGCCATTACTTTTGTCCGCATCCCCTTTTTGGCTGC
CTATAATTTAGGCAAAACGC

Product: alpha-crystallin/Hsp20 family ATP-independent chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MLEKERDILRRDDRPQSERRQLERESEKGELHGRHSTSPMAQMERMFDEVFKKPFFSLWSQRMAGGEMEELYLPVDVFEE
GDSVVVKAEIPGIRKEDIDVQLSPDSITISGKKSKAERTEQKDFYRVERSYGSFMRTCRLPVETITDTARASFKDGVLEV
RILKSEAATQRVKKLNVE

Sequences:

>Translated_178_residues
MLEKERDILRRDDRPQSERRQLERESEKGELHGRHSTSPMAQMERMFDEVFKKPFFSLWSQRMAGGEMEELYLPVDVFEE
GDSVVVKAEIPGIRKEDIDVQLSPDSITISGKKSKAERTEQKDFYRVERSYGSFMRTCRLPVETITDTARASFKDGVLEV
RILKSEAATQRVKKLNVE
>Mature_178_residues
MLEKERDILRRDDRPQSERRQLERESEKGELHGRHSTSPMAQMERMFDEVFKKPFFSLWSQRMAGGEMEELYLPVDVFEE
GDSVVVKAEIPGIRKEDIDVQLSPDSITISGKKSKAERTEQKDFYRVERSYGSFMRTCRLPVETITDTARASFKDGVLEV
RILKSEAATQRVKKLNVE

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 20720; Mature: 20720

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS00430 TONB_DEPENDENT_REC_1 ; PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEKERDILRRDDRPQSERRQLERESEKGELHGRHSTSPMAQMERMFDEVFKKPFFSLWS
CCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
QRMAGGEMEELYLPVDVFEEGDSVVVKAEIPGIRKEDIDVQLSPDSITISGKKSKAERTE
HHHCCCCHHHEECCHHHCCCCCCEEEEECCCCCCCCCCEEEECCCEEEEECCCHHHHHHH
QKDFYRVERSYGSFMRTCRLPVETITDTARASFKDGVLEVRILKSEAATQRVKKLNVE
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLEKERDILRRDDRPQSERRQLERESEKGELHGRHSTSPMAQMERMFDEVFKKPFFSLWS
CCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
QRMAGGEMEELYLPVDVFEEGDSVVVKAEIPGIRKEDIDVQLSPDSITISGKKSKAERTE
HHHCCCCHHHEECCHHHCCCCCCEEEEECCCCCCCCCCEEEECCCEEEEECCCHHHHHHH
QKDFYRVERSYGSFMRTCRLPVETITDTARASFKDGVLEVRILKSEAATQRVKKLNVE
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA