Click here to switch to the map view.

The map label for this gene is 197118316

Identifier: 197118316

GI number: 197118316

Start: 2234119

End: 2235423

Strand: Direct

Name: 197118316

Synonym: Gbem_1933

Alternate gene names: NA

Gene position: 2234119-2235423 (Clockwise)

Preceding gene: 197118315

Following gene: 197118317

Centisome position: 48.41

GC content: 58.24

Gene sequence:

>1305_bases
ATGAAGAAACAGAACAAAAAGCTTTTGGTGGCAGCAATTGCAGCAGCTCTGTCCGCAGCGTCCGCAGTACCCGCCCTAGC
ACTGGAGAACCAGTTCAACGGCGCCTTCACCGCTTTCTACGACATGTCGAACTTCAGCGGCAGCGGCGTCACCCAGAAGA
ACGCGCCCAGCGAGAACTACTTCGTACAGCGCGTTCGTTTGGGCTACACCGCCAAGGCTGACGACCACGTCAAACTGGTC
ACCAAGTTCGAATTCGACTACGACTACTGGGGCAACAGCTCCTACACCAACGCTCGCGGCGGCGGCGGCGCTATCGGTGC
CGACACGGTGAACATGGAGACCAAGCACCTCTATCTCGACCTGACCTATCCGCAGCTCAACACCAAGATCGGTATGATGC
CGTACAACGATTCCTTCAAAGGTCTGGTGTTCGACGCCGACATGGCCGGCATCCTTCTCTCTCACGATTACTCCAATGCC
AGCATCTCCGCGGGTTTCTTCCGCCTGATGGACTCCACCAAAGACAGCAACATCATTAAAGACGGTCGCCAGCAGGACTT
CACCCGCCTGGGTAGAAACACCAACGACATGTTCACCCTGGACGGCAAGTACACCGTCTCTAAGGACCTGACCGTCGGCG
CTGCCTACTACTACATCCAAGACGACAGCAACGACTTCGTCTCCACCATCCAGAGCGCCAAGGTGCACAACCTCGGTATC
AATGCCGCCGGCAACGTCGGCCCTGTTGCCCTGAACGGCTTCTTCCTGAAGCAGTTCGGCGACCTCTCCAAGACCACCGA
TGCCAAGGGCTACACCTTCAACGTCGGCGCCAAGATGCCCCTGGCCGGCGGCACCCTGCGCTCCGAGTTCCTCTATGTCA
GCGGCGGCAACGATCAGTTCTACATCACCCACAGCGAACCGGGCGCGACCGAGGGCGGCCAGTTCTACGACGCCGAGATG
ATCATGTTGAACCGTGACAAGTACGCGACCACCATCGATAACGCCATCATGTACGACGTCAACAACAGCGGTCAGGGCGT
TATCGAAGGCACCGTCGGCTACGACTACACCTTCAACGACAAGGTTTCCGCCAGCGCCAATGCCGGCTTCGCCGCCGTTG
CCAAGAACACCGCCCACGCAGGGAGCAGCGACTACCTCGGCACCGAGATCAACGCTGAGGCTTACTACAAGCTGACCGCC
AACGTTACTCTCGGCGCACGCGCGGGCTACCTCTTCCTCGGCGACTACTTCACCAACGAAGACAACCCCTACGATGTGAA
GCTCATTGCCAAGTACAACTTCTAA

Upstream 100 bases:

>100_bases
TCAGTTGAATGGAAAGGTGGTGGTCGTTTTCCCCCGGGTTAACTAGCAGGCCAGTTGTACCAGCAGGACATGCAATTAAC
TTAAAAGAGGAGGATGTTAA

Downstream 100 bases:

>100_bases
GACGCATACGATCTTCCCCGGTACTCTCTGTACCGGGGAAGATAAATTACGTCTGTGTCTGTCTTGACAATCAAGTAGTG
ACAATTAGAATCAGTTGACG

Product: OmpJ-like porin

Products: NA

Alternate protein names: Porin OmpJ; OmpJ-Like Porin

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MKKQNKKLLVAAIAAALSAASAVPALALENQFNGAFTAFYDMSNFSGSGVTQKNAPSENYFVQRVRLGYTAKADDHVKLV
TKFEFDYDYWGNSSYTNARGGGGAIGADTVNMETKHLYLDLTYPQLNTKIGMMPYNDSFKGLVFDADMAGILLSHDYSNA
SISAGFFRLMDSTKDSNIIKDGRQQDFTRLGRNTNDMFTLDGKYTVSKDLTVGAAYYYIQDDSNDFVSTIQSAKVHNLGI
NAAGNVGPVALNGFFLKQFGDLSKTTDAKGYTFNVGAKMPLAGGTLRSEFLYVSGGNDQFYITHSEPGATEGGQFYDAEM
IMLNRDKYATTIDNAIMYDVNNSGQGVIEGTVGYDYTFNDKVSASANAGFAAVAKNTAHAGSSDYLGTEINAEAYYKLTA
NVTLGARAGYLFLGDYFTNEDNPYDVKLIAKYNF

Sequences:

>Translated_434_residues
MKKQNKKLLVAAIAAALSAASAVPALALENQFNGAFTAFYDMSNFSGSGVTQKNAPSENYFVQRVRLGYTAKADDHVKLV
TKFEFDYDYWGNSSYTNARGGGGAIGADTVNMETKHLYLDLTYPQLNTKIGMMPYNDSFKGLVFDADMAGILLSHDYSNA
SISAGFFRLMDSTKDSNIIKDGRQQDFTRLGRNTNDMFTLDGKYTVSKDLTVGAAYYYIQDDSNDFVSTIQSAKVHNLGI
NAAGNVGPVALNGFFLKQFGDLSKTTDAKGYTFNVGAKMPLAGGTLRSEFLYVSGGNDQFYITHSEPGATEGGQFYDAEM
IMLNRDKYATTIDNAIMYDVNNSGQGVIEGTVGYDYTFNDKVSASANAGFAAVAKNTAHAGSSDYLGTEINAEAYYKLTA
NVTLGARAGYLFLGDYFTNEDNPYDVKLIAKYNF
>Mature_434_residues
MKKQNKKLLVAAIAAALSAASAVPALALENQFNGAFTAFYDMSNFSGSGVTQKNAPSENYFVQRVRLGYTAKADDHVKLV
TKFEFDYDYWGNSSYTNARGGGGAIGADTVNMETKHLYLDLTYPQLNTKIGMMPYNDSFKGLVFDADMAGILLSHDYSNA
SISAGFFRLMDSTKDSNIIKDGRQQDFTRLGRNTNDMFTLDGKYTVSKDLTVGAAYYYIQDDSNDFVSTIQSAKVHNLGI
NAAGNVGPVALNGFFLKQFGDLSKTTDAKGYTFNVGAKMPLAGGTLRSEFLYVSGGNDQFYITHSEPGATEGGQFYDAEM
IMLNRDKYATTIDNAIMYDVNNSGQGVIEGTVGYDYTFNDKVSASANAGFAAVAKNTAHAGSSDYLGTEINAEAYYKLTA
NVTLGARAGYLFLGDYFTNEDNPYDVKLIAKYNF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47215; Mature: 47215

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQNKKLLVAAIAAALSAASAVPALALENQFNGAFTAFYDMSNFSGSGVTQKNAPSENY
CCCCCCEEHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCE
FVQRVRLGYTAKADDHVKLVTKFEFDYDYWGNSSYTNARGGGGAIGADTVNMETKHLYLD
EEEEEEECEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEECEEEEEEEEE
LTYPQLNTKIGMMPYNDSFKGLVFDADMAGILLSHDYSNASISAGFFRLMDSTKDSNIIK
EECCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCHHHEECCCCCCCCHHC
DGRQQDFTRLGRNTNDMFTLDGKYTVSKDLTVGAAYYYIQDDSNDFVSTIQSAKVHNLGI
CCCHHHHHHHCCCCCCEEEECCCEEEECCEEEEEEEEEEECCCCHHHHHHHHCEEEECCC
NAAGNVGPVALNGFFLKQFGDLSKTTDAKGYTFNVGAKMPLAGGTLRSEFLYVSGGNDQF
CCCCCCCCEEEEEEEHHHHCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEE
YITHSEPGATEGGQFYDAEMIMLNRDKYATTIDNAIMYDVNNSGQGVIEGTVGYDYTFND
EEEECCCCCCCCCCEEEEEEEEEECCCCEEEECCEEEEEECCCCCEEEEECCCCEEEECC
KVSASANAGFAAVAKNTAHAGSSDYLGTEINAEAYYKLTANVTLGARAGYLFLGDYFTNE
CCCCCCCCCEEEEECCCCCCCCCCCCCEEECCEEEEEEEEEEEECCCCCEEEEEEEECCC
DNPYDVKLIAKYNF
CCCEEEEEEEEECC
>Mature Secondary Structure
MKKQNKKLLVAAIAAALSAASAVPALALENQFNGAFTAFYDMSNFSGSGVTQKNAPSENY
CCCCCCEEHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCE
FVQRVRLGYTAKADDHVKLVTKFEFDYDYWGNSSYTNARGGGGAIGADTVNMETKHLYLD
EEEEEEECEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEECEEEEEEEEE
LTYPQLNTKIGMMPYNDSFKGLVFDADMAGILLSHDYSNASISAGFFRLMDSTKDSNIIK
EECCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCHHHEECCCCCCCCHHC
DGRQQDFTRLGRNTNDMFTLDGKYTVSKDLTVGAAYYYIQDDSNDFVSTIQSAKVHNLGI
CCCHHHHHHHCCCCCCEEEECCCEEEECCEEEEEEEEEEECCCCHHHHHHHHCEEEECCC
NAAGNVGPVALNGFFLKQFGDLSKTTDAKGYTFNVGAKMPLAGGTLRSEFLYVSGGNDQF
CCCCCCCCEEEEEEEHHHHCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCEE
YITHSEPGATEGGQFYDAEMIMLNRDKYATTIDNAIMYDVNNSGQGVIEGTVGYDYTFND
EEEECCCCCCCCCCEEEEEEEEEECCCCEEEECCEEEEEECCCCCEEEEECCCCEEEECC
KVSASANAGFAAVAKNTAHAGSSDYLGTEINAEAYYKLTANVTLGARAGYLFLGDYFTNE
CCCCCCCCCEEEEECCCCCCCCCCCCCEEECCEEEEEEEEEEEECCCCCEEEEEEEECCC
DNPYDVKLIAKYNF
CCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA