| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is maeB-3 [H]
Identifier: 197118271
GI number: 197118271
Start: 2187490
End: 2189739
Strand: Reverse
Name: maeB-3 [H]
Synonym: Gbem_1888
Alternate gene names: 197118271
Gene position: 2189739-2187490 (Counterclockwise)
Preceding gene: 197118272
Following gene: 197118270
Centisome position: 47.45
GC content: 62.76
Gene sequence:
>2250_bases ATGAGCAAAAAATTGGGTGCCCTTGATTACCACTCAAGCGGCAGAAAAGGTAAGATCGAAGTCATCGCCACCAAGCCGTG CCAGACCGCAGCCGACCTGTCCCTCGCCTACTCTCCGGGGGTCGCGGAACCCTGCCTGGCCATCCAGGAGAACCCGGACG ACGCCTACAAGTACACGGCGAAGGGGAACCTCGTGGCGGTCGTATCCAACGGCACCGCGGTCCTGGGCCTTGGGAACCTG GGCGCCCTCGCCGGCAAGCCGGTCATGGAAGGGAAAGGTGTCCTCTTCAAGCGTTTCGCCGACATCGACGTCTTCGACAT CGAGCTGAACACCGAGAACCCCGACGAGATCATCAAGGCCTGCCAGCTCCTGGAGCCGACCTTCGGCGGCATCAACCTTG AGGACATCAAGGCGCCCGAGTGCTTCTATATCGAGGAGCAGCTCAAGAAGACCATGAACATCCCGGTCTTCCACGACGAC CAGCACGGCACCGCCATCATCTGCTCGGCGGCCCTTCTGAATGCCCTGATGCTGGTGCAAAAGAAGATCGAGGACATAAG GATCGTCGTCAACGGCGCCGGCGCCTCGGCCAACTCCTGCGCCAAGCTCGCCATCGCGCTCGGTGTGAAACCCAACAACA TGATCATGTGCGACACCAAGGGGGTCATCTACAAGGGGCGCGTCGAGGGGATGAATCCCTACAAGGAACTCTTCGCAGCC GAAACCCACTTCCGCACCCTGGAAGAGGCGGCGGTGGGAGCCGACGTCCTTTTCGGCCTCTCGGCCAAGGGGGCCTTCAC ACCGGAGATGGTCCGCTCCATGGCGCCGAACCCGATCATCTTCGCCATGGCGAACCCCGACCCGGAAATCACCCCGGAAG AGGCGCACGGGGTGCGCGGCGACGTGATCATCGCGACCGGCAGGAGCGACTACGCGAACCAGGTCAACAACGTCCTCGGC TTCCCCTTCATCTTCCGCGGCGCGCTCGACGTGCGCGCCACTGCCATCAACGAGGAGATGAAGCTCGCCGCGGTGCACGC CCTGGCGAAACTTGCCCGCGAGGAGGTGCCCGACTCCGTCAGCAAGGCCTACGGCAACGAGAAGTTCAGCTTCGGCCCGA CCTACATCATCCCCAAACCCTTCGACCCGCGCGTGCTTTTGCACGTGGCCCCGGCGATCGCCCAGGCCGCCATGGACACG GGGGTCGCGCGCCTGCCGATCGCCGACATGGGCAAGTACATCGAGCAGCTCGAGTCCTCGCAGGGCAAATCCAAAGAGAT CATGCGCATGATCATCAACAAGGCGAAGAGCGACCCGAAGAAGGTGGTCTTCTCCGAGGGTGAGGACGACAAGATCCTGC GCGCGGCCCAGGTGCTGGTCGAGGAGGGGATCGCCAAGCCGATCCTGATCGGAGACCAGAAGAAGATCAAGCAGAAGATG GACGATCTCAACCTGGACCTCGACGTGCCGATCATGGACCCGTCCGACTCCGAGTTCACCGAGGAGTACGCCGCGGAGCT CTACCGCTTAAGGCAAAGGAAAGGGCTCACCATTTCCGAGTGCCGCCGCATCATGCGCCGCAAGTCGCGGGCACACTTCG GCAACATGATGGTGCACATGGGGCACGCCGACGCTCTTCTGGGCGGGATCGACACCCACTACCCGGAAACCATCCGCCCC GCACTGCAGGTCTTAGGCAAGCAGGGGGGGCTCTCCAGCGTGCACGGCCTCTACATGATGGTGTCCAAACAGAACGTCTA CTTCCTGGCCGACACCACGGTGACCATCGATCCGACCGCGGAGGAGCTGGCCGAGACGGCCATTCTCGCCGCCGAGATGG TCACCAAGCTCGACATCGAGCCCCGCGTCGCCATGCTCTCCTTCTCCAACTTCGGCTCGGTGGACCACCCGCAGACGCGC AAGGTCAAGCGCGCCGTCGAGATCGTCAAGGAGCGCGCCCCCAACCTGATAGTAGAGGGTGAGATGCAGGCCGACACCGC CGTGGTCCCCGATCTTCTGGACGGCTTCACCTTCTCGAAACTGAAGACCCCGGCCAACATCCTGATCTTCCCCGACCTCA ACTCCGGGAACATCTGCTACAAGCTCTTGCACCACCTGGGCGGCGCCGAGGCGATAGGCCCGATCCTCATGGGGATGAAC AAGCCGGTGCACGTACTGCAGCGCGGCGACGACGTCAACGACATCGTCAACATGGCCGCCATCGCCGTGGTGGACGTACA GAACCTGTAG
Upstream 100 bases:
>100_bases AGGAGGTCCGGGTGCTGGTAGTCGTGACCAAGTAGTTGCACCGGCAGCAGAGACTTTAATGGCGCATAGCCGCGAATCTG ATGAGTCAAAGGAGAAATGC
Downstream 100 bases:
>100_bases ACGGAGCCCCCCTCCCCCGAAAAGGCTCTTCCGAGAGTTGCGGGGATAATAGCCCCCCTCCCTTGACGGGAGGGGGGACC AAAATCACGTAAACACAAGT
Product: malic enzyme
Products: NA
Alternate protein names: NADP-ME [H]
Number of amino acids: Translated: 749; Mature: 748
Protein sequence:
>749_residues MSKKLGALDYHSSGRKGKIEVIATKPCQTAADLSLAYSPGVAEPCLAIQENPDDAYKYTAKGNLVAVVSNGTAVLGLGNL GALAGKPVMEGKGVLFKRFADIDVFDIELNTENPDEIIKACQLLEPTFGGINLEDIKAPECFYIEEQLKKTMNIPVFHDD QHGTAIICSAALLNALMLVQKKIEDIRIVVNGAGASANSCAKLAIALGVKPNNMIMCDTKGVIYKGRVEGMNPYKELFAA ETHFRTLEEAAVGADVLFGLSAKGAFTPEMVRSMAPNPIIFAMANPDPEITPEEAHGVRGDVIIATGRSDYANQVNNVLG FPFIFRGALDVRATAINEEMKLAAVHALAKLAREEVPDSVSKAYGNEKFSFGPTYIIPKPFDPRVLLHVAPAIAQAAMDT GVARLPIADMGKYIEQLESSQGKSKEIMRMIINKAKSDPKKVVFSEGEDDKILRAAQVLVEEGIAKPILIGDQKKIKQKM DDLNLDLDVPIMDPSDSEFTEEYAAELYRLRQRKGLTISECRRIMRRKSRAHFGNMMVHMGHADALLGGIDTHYPETIRP ALQVLGKQGGLSSVHGLYMMVSKQNVYFLADTTVTIDPTAEELAETAILAAEMVTKLDIEPRVAMLSFSNFGSVDHPQTR KVKRAVEIVKERAPNLIVEGEMQADTAVVPDLLDGFTFSKLKTPANILIFPDLNSGNICYKLLHHLGGAEAIGPILMGMN KPVHVLQRGDDVNDIVNMAAIAVVDVQNL
Sequences:
>Translated_749_residues MSKKLGALDYHSSGRKGKIEVIATKPCQTAADLSLAYSPGVAEPCLAIQENPDDAYKYTAKGNLVAVVSNGTAVLGLGNL GALAGKPVMEGKGVLFKRFADIDVFDIELNTENPDEIIKACQLLEPTFGGINLEDIKAPECFYIEEQLKKTMNIPVFHDD QHGTAIICSAALLNALMLVQKKIEDIRIVVNGAGASANSCAKLAIALGVKPNNMIMCDTKGVIYKGRVEGMNPYKELFAA ETHFRTLEEAAVGADVLFGLSAKGAFTPEMVRSMAPNPIIFAMANPDPEITPEEAHGVRGDVIIATGRSDYANQVNNVLG FPFIFRGALDVRATAINEEMKLAAVHALAKLAREEVPDSVSKAYGNEKFSFGPTYIIPKPFDPRVLLHVAPAIAQAAMDT GVARLPIADMGKYIEQLESSQGKSKEIMRMIINKAKSDPKKVVFSEGEDDKILRAAQVLVEEGIAKPILIGDQKKIKQKM DDLNLDLDVPIMDPSDSEFTEEYAAELYRLRQRKGLTISECRRIMRRKSRAHFGNMMVHMGHADALLGGIDTHYPETIRP ALQVLGKQGGLSSVHGLYMMVSKQNVYFLADTTVTIDPTAEELAETAILAAEMVTKLDIEPRVAMLSFSNFGSVDHPQTR KVKRAVEIVKERAPNLIVEGEMQADTAVVPDLLDGFTFSKLKTPANILIFPDLNSGNICYKLLHHLGGAEAIGPILMGMN KPVHVLQRGDDVNDIVNMAAIAVVDVQNL >Mature_748_residues SKKLGALDYHSSGRKGKIEVIATKPCQTAADLSLAYSPGVAEPCLAIQENPDDAYKYTAKGNLVAVVSNGTAVLGLGNLG ALAGKPVMEGKGVLFKRFADIDVFDIELNTENPDEIIKACQLLEPTFGGINLEDIKAPECFYIEEQLKKTMNIPVFHDDQ HGTAIICSAALLNALMLVQKKIEDIRIVVNGAGASANSCAKLAIALGVKPNNMIMCDTKGVIYKGRVEGMNPYKELFAAE THFRTLEEAAVGADVLFGLSAKGAFTPEMVRSMAPNPIIFAMANPDPEITPEEAHGVRGDVIIATGRSDYANQVNNVLGF PFIFRGALDVRATAINEEMKLAAVHALAKLAREEVPDSVSKAYGNEKFSFGPTYIIPKPFDPRVLLHVAPAIAQAAMDTG VARLPIADMGKYIEQLESSQGKSKEIMRMIINKAKSDPKKVVFSEGEDDKILRAAQVLVEEGIAKPILIGDQKKIKQKMD DLNLDLDVPIMDPSDSEFTEEYAAELYRLRQRKGLTISECRRIMRRKSRAHFGNMMVHMGHADALLGGIDTHYPETIRPA LQVLGKQGGLSSVHGLYMMVSKQNVYFLADTTVTIDPTAEELAETAILAAEMVTKLDIEPRVAMLSFSNFGSVDHPQTRK VKRAVEIVKERAPNLIVEGEMQADTAVVPDLLDGFTFSKLKTPANILIFPDLNSGNICYKLLHHLGGAEAIGPILMGMNK PVHVLQRGDDVNDIVNMAAIAVVDVQNL
Specific function: Unknown
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family [H]
Homologues:
Organism=Homo sapiens, GI62420882, Length=349, Percent_Identity=28.9398280802292, Blast_Score=80, Evalue=7e-15, Organism=Homo sapiens, GI62420880, Length=349, Percent_Identity=28.9398280802292, Blast_Score=80, Evalue=7e-15, Organism=Homo sapiens, GI239049447, Length=349, Percent_Identity=28.9398280802292, Blast_Score=80, Evalue=7e-15, Organism=Homo sapiens, GI4505143, Length=348, Percent_Identity=26.7241379310345, Blast_Score=75, Evalue=3e-13, Organism=Homo sapiens, GI4505145, Length=353, Percent_Identity=28.0453257790368, Blast_Score=71, Evalue=4e-12, Organism=Escherichia coli, GI1788806, Length=754, Percent_Identity=52.2546419098143, Blast_Score=743, Evalue=0.0, Organism=Escherichia coli, GI1788800, Length=329, Percent_Identity=34.6504559270517, Blast_Score=187, Evalue=2e-48, Organism=Escherichia coli, GI1788635, Length=346, Percent_Identity=32.9479768786127, Blast_Score=181, Evalue=1e-46, Organism=Caenorhabditis elegans, GI17537199, Length=424, Percent_Identity=24.7641509433962, Blast_Score=71, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6322823, Length=267, Percent_Identity=27.3408239700375, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI24646388, Length=349, Percent_Identity=30.3724928366762, Blast_Score=91, Evalue=3e-18, Organism=Drosophila melanogaster, GI24646386, Length=349, Percent_Identity=30.3724928366762, Blast_Score=91, Evalue=4e-18, Organism=Drosophila melanogaster, GI281362674, Length=411, Percent_Identity=27.4939172749392, Blast_Score=83, Evalue=7e-16, Organism=Drosophila melanogaster, GI21356279, Length=411, Percent_Identity=27.4939172749392, Blast_Score=83, Evalue=8e-16, Organism=Drosophila melanogaster, GI281362672, Length=411, Percent_Identity=27.4939172749392, Blast_Score=83, Evalue=8e-16, Organism=Drosophila melanogaster, GI78707242, Length=409, Percent_Identity=26.6503667481663, Blast_Score=77, Evalue=6e-14, Organism=Drosophila melanogaster, GI78707238, Length=409, Percent_Identity=26.6503667481663, Blast_Score=77, Evalue=6e-14, Organism=Drosophila melanogaster, GI78707240, Length=346, Percent_Identity=27.1676300578035, Blast_Score=74, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR012188 - InterPro: IPR016040 - InterPro: IPR002505 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M; PF01515 PTA_PTB [H]
EC number: =1.1.1.40 [H]
Molecular weight: Translated: 81402; Mature: 81271
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKLGALDYHSSGRKGKIEVIATKPCQTAADLSLAYSPGVAEPCLAIQENPDDAYKYTA CCCCCCCCCCCCCCCCCEEEEEEECCCCCHHCCEEEECCCCCCCCCEEECCCCHHEEEEE KGNLVAVVSNGTAVLGLGNLGALAGKPVMEGKGVLFKRFADIDVFDIELNTENPDEIIKA CCCEEEEEECCEEEEEECCCCHHCCCCCCCCCCCEEEEECCCEEEEEEECCCCHHHHHHH CQLLEPTFGGINLEDIKAPECFYIEEQLKKTMNIPVFHDDQHGTAIICSAALLNALMLVQ HHHHCCCCCCCCHHHCCCCCEEEHHHHHHHHCCCCEEECCCCCCEEHHHHHHHHHHHHHH KKIEDIRIVVNGAGASANSCAKLAIALGVKPNNMIMCDTKGVIYKGRVEGMNPYKELFAA HHHCEEEEEEECCCCCCCCHHEEEEEEECCCCCEEEECCCCEEEECCCCCCCHHHHHHHH ETHFRTLEEAAVGADVLFGLSAKGAFTPEMVRSMAPNPIIFAMANPDPEITPEEAHGVRG HHHHHHHHHHHCCCHHHEECCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCHHHCCCCC DVIIATGRSDYANQVNNVLGFPFIFRGALDVRATAINEEMKLAAVHALAKLAREEVPDSV CEEEEECCCHHHHHHHHHCCCHHHHHCCHHHEEEHHCHHHHHHHHHHHHHHHHHHCCHHH SKAYGNEKFSFGPTYIIPKPFDPRVLLHVAPAIAQAAMDTGVARLPIADMGKYIEQLESS HHHCCCCCCCCCCEEEECCCCCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC QGKSKEIMRMIINKAKSDPKKVVFSEGEDDKILRAAQVLVEEGIAKPILIGDQKKIKQKM CCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCHHHHHHHH DDLNLDLDVPIMDPSDSEFTEEYAAELYRLRQRKGLTISECRRIMRRKSRAHFGNMMVHM HHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEE GHADALLGGIDTHYPETIRPALQVLGKQGGLSSVHGLYMMVSKQNVYFLADTTVTIDPTA CCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHCEEEEEEECCCEEEEEECEEEECCCH EELAETAILAAEMVTKLDIEPRVAMLSFSNFGSVDHPQTRKVKRAVEIVKERAPNLIVEG HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEC EMQADTAVVPDLLDGFTFSKLKTPANILIFPDLNSGNICYKLLHHLGGAEAIGPILMGMN CCCCCCHHHHHHHCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHCCC KPVHVLQRGDDVNDIVNMAAIAVVDVQNL CCHHHHHCCCCHHHHHHHHHHEEEEECCC >Mature Secondary Structure SKKLGALDYHSSGRKGKIEVIATKPCQTAADLSLAYSPGVAEPCLAIQENPDDAYKYTA CCCCCCCCCCCCCCCCEEEEEEECCCCCHHCCEEEECCCCCCCCCEEECCCCHHEEEEE KGNLVAVVSNGTAVLGLGNLGALAGKPVMEGKGVLFKRFADIDVFDIELNTENPDEIIKA CCCEEEEEECCEEEEEECCCCHHCCCCCCCCCCCEEEEECCCEEEEEEECCCCHHHHHHH CQLLEPTFGGINLEDIKAPECFYIEEQLKKTMNIPVFHDDQHGTAIICSAALLNALMLVQ HHHHCCCCCCCCHHHCCCCCEEEHHHHHHHHCCCCEEECCCCCCEEHHHHHHHHHHHHHH KKIEDIRIVVNGAGASANSCAKLAIALGVKPNNMIMCDTKGVIYKGRVEGMNPYKELFAA HHHCEEEEEEECCCCCCCCHHEEEEEEECCCCCEEEECCCCEEEECCCCCCCHHHHHHHH ETHFRTLEEAAVGADVLFGLSAKGAFTPEMVRSMAPNPIIFAMANPDPEITPEEAHGVRG HHHHHHHHHHHCCCHHHEECCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCHHHCCCCC DVIIATGRSDYANQVNNVLGFPFIFRGALDVRATAINEEMKLAAVHALAKLAREEVPDSV CEEEEECCCHHHHHHHHHCCCHHHHHCCHHHEEEHHCHHHHHHHHHHHHHHHHHHCCHHH SKAYGNEKFSFGPTYIIPKPFDPRVLLHVAPAIAQAAMDTGVARLPIADMGKYIEQLESS HHHCCCCCCCCCCEEEECCCCCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC QGKSKEIMRMIINKAKSDPKKVVFSEGEDDKILRAAQVLVEEGIAKPILIGDQKKIKQKM CCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCHHHHHHHH DDLNLDLDVPIMDPSDSEFTEEYAAELYRLRQRKGLTISECRRIMRRKSRAHFGNMMVHM HHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEE GHADALLGGIDTHYPETIRPALQVLGKQGGLSSVHGLYMMVSKQNVYFLADTTVTIDPTA CCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHCEEEEEEECCCEEEEEECEEEECCCH EELAETAILAAEMVTKLDIEPRVAMLSFSNFGSVDHPQTRKVKRAVEIVKERAPNLIVEG HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEC EMQADTAVVPDLLDGFTFSKLKTPANILIFPDLNSGNICYKLLHHLGGAEAIGPILMGMN CCCCCCHHHHHHHCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHCCC KPVHVLQRGDDVNDIVNMAAIAVVDVQNL CCHHHHHCCCCHHHHHHHHHHEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 36376 [H]