| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118251
Identifier: 197118251
GI number: 197118251
Start: 2161950
End: 2164421
Strand: Reverse
Name: 197118251
Synonym: Gbem_1868
Alternate gene names: NA
Gene position: 2164421-2161950 (Counterclockwise)
Preceding gene: 197118253
Following gene: 197118250
Centisome position: 46.9
GC content: 65.21
Gene sequence:
>2472_bases ATGTCACGACAGCTGGACGCTACCCCCACTTCCCTCTCCTCGCCTGCCACCATCACCGAACTCCATCCCCATTTCCTCAG AAACGTCATGACGAGGCTCGTCGGACAGGAGCCGACAGCGGCGGGTTCTCTGGAACGCCTACCCTTCGCCGCCGGCGACA CCACCGGGGGGACCGAGACCGAGCTGCAAGCCGTGGTGGCTGGGGATCGGACCAGGGTCGACCTGCCGCTGGTGATCGAG CAATCCGACTACTTCGCCAACATCGCCAAACGCGCCGCTGCAGGCGAGACCCCAAAGCGACTGATCACGGAGCTCGAGCG CTACCTGGCGGGGAACAGGGAAAACGTCTGGGAAAACAGCTGGGTGAGGTTTCCGGCAAGAAGCCTCTCCCCCTTCGCGC TGCGGGTATTCGATAACGACCTCTCGGCCGACAAGAAGAGCCCGCAGGCTGGACGGCGCAGCGACGCCGGGCGCTTCTTC GTCACCGCGCCGGACGGGACGCAGCAACTCAGGGTCCCCGTCAGCTATCTCCTGAAACTCTCCCTCGCCGACCTGATCGG CTCTCAAAAACTTCCTGCTCCGCTTGTGGAAACCGGCAAGAGACTTCTGGGGCACTACCTGAATGACAACACCTCCCCCG AAACCTTTTCCTTCCACGTGGTGCCGCTCACCCGGCAGGGGGGAATGGGGCGGGCGCTCGCCAGGGAAACCTCCAAGCGC TTCCTCTTCACCCAGATGCTCGCCATGCACACCAACTATAGCTTCGGGCTTAAAGAGAGCGGCCAGCGCGCCATGGTCTA CTTCGCGCCGCACCCGCCGCTCAGGCAAAAGGAGCTGAACGACCACGTTCCCGACGCCTTCTACCGCGACCTCTTCATGA GTCCCTGCCTCTCCGGCTGGGACCGGGGCGAGGAGAAGTACCGCTACATGCAGCTTTGCCACCAGGTCCTCTCCAGAAGC CAGCTGAACGCGGTCGCCAAGCTGCGCGAGGCGGGGATCATCACCAACAACCTGGTGGTGCTCCCGAACGTCTCCAACGT GAGCCTGGCCAACAACGGCACCCACGTGAGCCTGGGGAGCCGCAGGCTGGGGAACCTCCTCTCCGACCCGGCCTCAGGCT TCTCCCAGGCGCACGAGAAGTACCTGGGGGATCTCGCCATCAAGATGGCGGAGCACTTCCTGCCGCTCTTCGTCGGGACC TACTCGGCGGCCCCCTACCGGCTGGGGTACACCGCCTTCCATCCCGAGAAGGCGCTCGGCTTCCTGCCGCACGAACTCGA CTACACCCACCTGCGCATGCTCTGGAGGCGCTGGCAGAAAAAGGCCAAGATCTCCGTGTTCGGCCAGCCCGTCACCCCGT TCGGACCGCCGTGGATCGACCGGATGGTGAGCGGGCTCTTCGGGCTCAAGGGGGACTTCGTCCCGGACTTCCGCCTGGTC GACTACCTGATCTGCCTGATGAGCACGCCGCAAAGCCCGGCCCTGAACGGCCGCGTGGGAAGCAGCGACAAGCTGAAACG CGACCTTGCCGAGATGGGGGTGTTCGATTCCCAGATGTCGCTCTACCTCCTCTACAAGCTGCGCGAGCACGCCGTGATGG GATTTTCCGGCTTCGAAGGACGCCACTACAGCCAGTTCGACTCGATTCGGGACGACCTGGCCGGCGCCACCGACCTGCAG ATGCTGGTCAACGCGCTCGCCTTCAAGTACATGGCGCAGGGGACCCTCACCCACCCATCCATCCCCGACGACCCCACCCT GGAGAGCGAACGGCGCCAGATCTTTTTCGCCTGCGCGATCGGCAACCCGACCTTTTACGTCAGGCGCAACAGCACAAACC GGTTCCTGCTGCGCATCCTGGAAAAAACCAGGGGGGTCCGCAACAGCCGGCGCTACCCCGGCTACGCCAGGGTCAAGGTC GGGGAGTATCGCCTCGCCCTGCTGCGGCTCTTGCGCCAGGACGCAGGGGACCTGATCGAGATGATGGGGCTAGAGCGGAC CATGGCCGACCTGGAAGCCCGGCTGGTCGATCCGGAGCGCTCTTCGGTGGCGGGTAAACTGACCAGCGGCATCCTGGCCG AAGTGGGGGGGAAACAGCCGCTCAAGGTCAACGCCGACGACTTCAACCGCGGCGCCGAGCGCTACTACCGCGAGGGACTC AGAAGGAAGCACATGGAGGAGGCGCTCGACGCGCTGGAGGAGGATTTCCACGCGCTCGACCGCGCCGCTTGCGAGGGAAG CGGAGCCGAACGGCTCCTCCTGCAGGGAGCGGGCGAGGAGCGCGGTGCGGCTGCCCTTTTGGCCAAGGTGCGCGGCGACT TCCTCGCCGAGCGGCTGGACCTTGGAACCCTCAGGCGCCTCATGAACCTGACCCTGATGACGGTGCAGCGCGATCAGGCC GAGGCGGACGCCGCGCTCAAGGGCAAAACCGGCGCCGCATCAAAGGCGCCGCCGCTCTACCGGGCCAGGTAG
Upstream 100 bases:
>100_bases TTCACCGTTTGTTCACACCATTTCCACATTGCTGCGCTAAATAAGGGCTGCCAGACGGCAACATCCTCTGGAGACGAGTT GCCCGTAAAGGAGGCCTGCA
Downstream 100 bases:
>100_bases ATGCGGGGGTGGCGCCCCTCTTCGTTGCCGTCCTTTAGCGCGGTAACAGGTCCCAAAGCAGCACAAACAGTTCAGCAAAG GAGAACGCGTCATGGAATGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 823; Mature: 822
Protein sequence:
>823_residues MSRQLDATPTSLSSPATITELHPHFLRNVMTRLVGQEPTAAGSLERLPFAAGDTTGGTETELQAVVAGDRTRVDLPLVIE QSDYFANIAKRAAAGETPKRLITELERYLAGNRENVWENSWVRFPARSLSPFALRVFDNDLSADKKSPQAGRRSDAGRFF VTAPDGTQQLRVPVSYLLKLSLADLIGSQKLPAPLVETGKRLLGHYLNDNTSPETFSFHVVPLTRQGGMGRALARETSKR FLFTQMLAMHTNYSFGLKESGQRAMVYFAPHPPLRQKELNDHVPDAFYRDLFMSPCLSGWDRGEEKYRYMQLCHQVLSRS QLNAVAKLREAGIITNNLVVLPNVSNVSLANNGTHVSLGSRRLGNLLSDPASGFSQAHEKYLGDLAIKMAEHFLPLFVGT YSAAPYRLGYTAFHPEKALGFLPHELDYTHLRMLWRRWQKKAKISVFGQPVTPFGPPWIDRMVSGLFGLKGDFVPDFRLV DYLICLMSTPQSPALNGRVGSSDKLKRDLAEMGVFDSQMSLYLLYKLREHAVMGFSGFEGRHYSQFDSIRDDLAGATDLQ MLVNALAFKYMAQGTLTHPSIPDDPTLESERRQIFFACAIGNPTFYVRRNSTNRFLLRILEKTRGVRNSRRYPGYARVKV GEYRLALLRLLRQDAGDLIEMMGLERTMADLEARLVDPERSSVAGKLTSGILAEVGGKQPLKVNADDFNRGAERYYREGL RRKHMEEALDALEEDFHALDRAACEGSGAERLLLQGAGEERGAAALLAKVRGDFLAERLDLGTLRRLMNLTLMTVQRDQA EADAALKGKTGAASKAPPLYRAR
Sequences:
>Translated_823_residues MSRQLDATPTSLSSPATITELHPHFLRNVMTRLVGQEPTAAGSLERLPFAAGDTTGGTETELQAVVAGDRTRVDLPLVIE QSDYFANIAKRAAAGETPKRLITELERYLAGNRENVWENSWVRFPARSLSPFALRVFDNDLSADKKSPQAGRRSDAGRFF VTAPDGTQQLRVPVSYLLKLSLADLIGSQKLPAPLVETGKRLLGHYLNDNTSPETFSFHVVPLTRQGGMGRALARETSKR FLFTQMLAMHTNYSFGLKESGQRAMVYFAPHPPLRQKELNDHVPDAFYRDLFMSPCLSGWDRGEEKYRYMQLCHQVLSRS QLNAVAKLREAGIITNNLVVLPNVSNVSLANNGTHVSLGSRRLGNLLSDPASGFSQAHEKYLGDLAIKMAEHFLPLFVGT YSAAPYRLGYTAFHPEKALGFLPHELDYTHLRMLWRRWQKKAKISVFGQPVTPFGPPWIDRMVSGLFGLKGDFVPDFRLV DYLICLMSTPQSPALNGRVGSSDKLKRDLAEMGVFDSQMSLYLLYKLREHAVMGFSGFEGRHYSQFDSIRDDLAGATDLQ MLVNALAFKYMAQGTLTHPSIPDDPTLESERRQIFFACAIGNPTFYVRRNSTNRFLLRILEKTRGVRNSRRYPGYARVKV GEYRLALLRLLRQDAGDLIEMMGLERTMADLEARLVDPERSSVAGKLTSGILAEVGGKQPLKVNADDFNRGAERYYREGL RRKHMEEALDALEEDFHALDRAACEGSGAERLLLQGAGEERGAAALLAKVRGDFLAERLDLGTLRRLMNLTLMTVQRDQA EADAALKGKTGAASKAPPLYRAR >Mature_822_residues SRQLDATPTSLSSPATITELHPHFLRNVMTRLVGQEPTAAGSLERLPFAAGDTTGGTETELQAVVAGDRTRVDLPLVIEQ SDYFANIAKRAAAGETPKRLITELERYLAGNRENVWENSWVRFPARSLSPFALRVFDNDLSADKKSPQAGRRSDAGRFFV TAPDGTQQLRVPVSYLLKLSLADLIGSQKLPAPLVETGKRLLGHYLNDNTSPETFSFHVVPLTRQGGMGRALARETSKRF LFTQMLAMHTNYSFGLKESGQRAMVYFAPHPPLRQKELNDHVPDAFYRDLFMSPCLSGWDRGEEKYRYMQLCHQVLSRSQ LNAVAKLREAGIITNNLVVLPNVSNVSLANNGTHVSLGSRRLGNLLSDPASGFSQAHEKYLGDLAIKMAEHFLPLFVGTY SAAPYRLGYTAFHPEKALGFLPHELDYTHLRMLWRRWQKKAKISVFGQPVTPFGPPWIDRMVSGLFGLKGDFVPDFRLVD YLICLMSTPQSPALNGRVGSSDKLKRDLAEMGVFDSQMSLYLLYKLREHAVMGFSGFEGRHYSQFDSIRDDLAGATDLQM LVNALAFKYMAQGTLTHPSIPDDPTLESERRQIFFACAIGNPTFYVRRNSTNRFLLRILEKTRGVRNSRRYPGYARVKVG EYRLALLRLLRQDAGDLIEMMGLERTMADLEARLVDPERSSVAGKLTSGILAEVGGKQPLKVNADDFNRGAERYYREGLR RKHMEEALDALEEDFHALDRAACEGSGAERLLLQGAGEERGAAALLAKVRGDFLAERLDLGTLRRLMNLTLMTVQRDQAE ADAALKGKTGAASKAPPLYRAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91850; Mature: 91719
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRQLDATPTSLSSPATITELHPHFLRNVMTRLVGQEPTAAGSLERLPFAAGDTTGGTET CCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCHH ELQAVVAGDRTRVDLPLVIEQSDYFANIAKRAAAGETPKRLITELERYLAGNRENVWENS HHHHEEECCCEEECCEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC WVRFPARSLSPFALRVFDNDLSADKKSPQAGRRSDAGRFFVTAPDGTQQLRVPVSYLLKL CEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH SLADLIGSQKLPAPLVETGKRLLGHYLNDNTSPETFSFHVVPLTRQGGMGRALARETSKR HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHH FLFTQMLAMHTNYSFGLKESGQRAMVYFAPHPPLRQKELNDHVPDAFYRDLFMSPCLSGW HHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHH DRGEEKYRYMQLCHQVLSRSQLNAVAKLREAGIITNNLVVLPNVSNVSLANNGTHVSLGS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEEEEECCCCEEECCCCCEEEECH RRLGNLLSDPASGFSQAHEKYLGDLAIKMAEHFLPLFVGTYSAAPYRLGYTAFHPEKALG HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCEEECCHHHHC FLPHELDYTHLRMLWRRWQKKAKISVFGQPVTPFGPPWIDRMVSGLFGLKGDFVPDFRLV CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH DYLICLMSTPQSPALNGRVGSSDKLKRDLAEMGVFDSQMSLYLLYKLREHAVMGFSGFEG HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC RHYSQFDSIRDDLAGATDLQMLVNALAFKYMAQGTLTHPSIPDDPTLESERRQIFFACAI CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEE GNPTFYVRRNSTNRFLLRILEKTRGVRNSRRYPGYARVKVGEYRLALLRLLRQDAGDLIE CCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHH MMGLERTMADLEARLVDPERSSVAGKLTSGILAEVGGKQPLKVNADDFNRGAERYYREGL HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHH RRKHMEEALDALEEDFHALDRAACEGSGAERLLLQGAGEERGAAALLAKVRGDFLAERLD HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHC LGTLRRLMNLTLMTVQRDQAEADAALKGKTGAASKAPPLYRAR HHHHHHHHHHHHHEEECHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure SRQLDATPTSLSSPATITELHPHFLRNVMTRLVGQEPTAAGSLERLPFAAGDTTGGTET CCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCHH ELQAVVAGDRTRVDLPLVIEQSDYFANIAKRAAAGETPKRLITELERYLAGNRENVWENS HHHHEEECCCEEECCEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC WVRFPARSLSPFALRVFDNDLSADKKSPQAGRRSDAGRFFVTAPDGTQQLRVPVSYLLKL CEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH SLADLIGSQKLPAPLVETGKRLLGHYLNDNTSPETFSFHVVPLTRQGGMGRALARETSKR HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHH FLFTQMLAMHTNYSFGLKESGQRAMVYFAPHPPLRQKELNDHVPDAFYRDLFMSPCLSGW HHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHH DRGEEKYRYMQLCHQVLSRSQLNAVAKLREAGIITNNLVVLPNVSNVSLANNGTHVSLGS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEEEEECCCCEEECCCCCEEEECH RRLGNLLSDPASGFSQAHEKYLGDLAIKMAEHFLPLFVGTYSAAPYRLGYTAFHPEKALG HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCEEECCHHHHC FLPHELDYTHLRMLWRRWQKKAKISVFGQPVTPFGPPWIDRMVSGLFGLKGDFVPDFRLV CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH DYLICLMSTPQSPALNGRVGSSDKLKRDLAEMGVFDSQMSLYLLYKLREHAVMGFSGFEG HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC RHYSQFDSIRDDLAGATDLQMLVNALAFKYMAQGTLTHPSIPDDPTLESERRQIFFACAI CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEE GNPTFYVRRNSTNRFLLRILEKTRGVRNSRRYPGYARVKVGEYRLALLRLLRQDAGDLIE CCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHH MMGLERTMADLEARLVDPERSSVAGKLTSGILAEVGGKQPLKVNADDFNRGAERYYREGL HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHH RRKHMEEALDALEEDFHALDRAACEGSGAERLLLQGAGEERGAAALLAKVRGDFLAERLD HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHC LGTLRRLMNLTLMTVQRDQAEADAALKGKTGAASKAPPLYRAR HHHHHHHHHHHHHEEECHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA