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The map label for this gene is psd [H]

Identifier: 197118245

GI number: 197118245

Start: 2155406

End: 2156413

Strand: Reverse

Name: psd [H]

Synonym: Gbem_1862

Alternate gene names: 197118245

Gene position: 2156413-2155406 (Counterclockwise)

Preceding gene: 197118246

Following gene: 197118244

Centisome position: 46.72

GC content: 65.18

Gene sequence:

>1008_bases
ATGCAGACGACACGGCACCAGTACATCGCGCGGGAGAGCGGCGCTGTCTGCGACGAAGCGCTCTTCGGCGACCGCTTCGT
CCGGCTCATGTACCACGGCGTGCGGGAGAACGCGCCCGGGCTGTTCCGGCTTTTGACCAGCCCGCGCATGACCGGCATCC
TCGGTTACGTCAACTACGACCTCCCCTTCGCCTCGGGGGGCTCGGCCTGCGCCCGTTTCCTGCACCAGCTGAAGGTCGAC
CTATCCGAATGCCTGCTGCGGCCCGAAGAACTCGACACCCCGCGCAAGGTCTTCGAGCGCCGGATACGCTACTGGGAGTG
CCGCCCCATGCCGGAAAGGGCGGAGGAGGTGGTTTCTCCCGCCGACGCCCGGGTGCTGGTCGGCTCCTGCCGCGACACCT
CCAGCCTCTTCATCAAGGACAAGTTCTTCAGCTTCGACGAGCTTTTGGGGGGCGAGCGCCTTCCCTGGCTCAACGCGCTG
CGCGACGGGGACTTCGCCCTGTTCCGGCTCACCCCCGACAAGTACCACTACAACCACACCCCCGTATCCGGCGAAGTGGC
GGACATCTACACGATCGACGGCGAGTTCAACTCCTGCAACCCGGAGGCGATCGTCGCCATGGCGACCCCTTACTCCAAGA
ACCGGCGGGTGGTGACCATCATCAACACGGACGTCAAGGGGGGAAGCAACGTCGGCCTGGTCGCCATGATCGAGGTGGTG
GCGCTCATGATCGGCGACATCGTGCAGTGCTACAGCGCCGAGCGCTACCTCGACCCGCAACCCATAACGCGCGGCATGTT
CGTCAAGAAAGGGCAGCCCAAATCGCTCTACCGCCCCGGGAGCAGTACCGACATCGTCATCTTCCAGAAAGGGAGGGTGA
GCTTCGCCGCGGACCTCCTGGAAAACCAGGCGCGCATCGACGCGACCAGCAGGTTCTCGCAGGGGTTCAGCATTCCCCTG
GTGGAAACCGACATCAGGGTCCGCGCGCTGCTGGCCTCGGCCCGCTGA

Upstream 100 bases:

>100_bases
TGTTTCACCTGTTGGTCACAAGATCTCAATGTAGTTGAGGTACACAGGTGGTGTCGGTTGCGAAACGGACGCGATCACAA
CTGCAAAGGAGAACCTCAAG

Downstream 100 bases:

>100_bases
GAGCCGGACAAGGAGACGCAACTATGACAGAGACCATTTTCTTGCTGGGGCTGGCGGCATGCTCGGCCCTCTACCTCATC
TGGGGCTGGACTACGCTTCC

Product: phosphatidylserine decarboxylase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MQTTRHQYIARESGAVCDEALFGDRFVRLMYHGVRENAPGLFRLLTSPRMTGILGYVNYDLPFASGGSACARFLHQLKVD
LSECLLRPEELDTPRKVFERRIRYWECRPMPERAEEVVSPADARVLVGSCRDTSSLFIKDKFFSFDELLGGERLPWLNAL
RDGDFALFRLTPDKYHYNHTPVSGEVADIYTIDGEFNSCNPEAIVAMATPYSKNRRVVTIINTDVKGGSNVGLVAMIEVV
ALMIGDIVQCYSAERYLDPQPITRGMFVKKGQPKSLYRPGSSTDIVIFQKGRVSFAADLLENQARIDATSRFSQGFSIPL
VETDIRVRALLASAR

Sequences:

>Translated_335_residues
MQTTRHQYIARESGAVCDEALFGDRFVRLMYHGVRENAPGLFRLLTSPRMTGILGYVNYDLPFASGGSACARFLHQLKVD
LSECLLRPEELDTPRKVFERRIRYWECRPMPERAEEVVSPADARVLVGSCRDTSSLFIKDKFFSFDELLGGERLPWLNAL
RDGDFALFRLTPDKYHYNHTPVSGEVADIYTIDGEFNSCNPEAIVAMATPYSKNRRVVTIINTDVKGGSNVGLVAMIEVV
ALMIGDIVQCYSAERYLDPQPITRGMFVKKGQPKSLYRPGSSTDIVIFQKGRVSFAADLLENQARIDATSRFSQGFSIPL
VETDIRVRALLASAR
>Mature_335_residues
MQTTRHQYIARESGAVCDEALFGDRFVRLMYHGVRENAPGLFRLLTSPRMTGILGYVNYDLPFASGGSACARFLHQLKVD
LSECLLRPEELDTPRKVFERRIRYWECRPMPERAEEVVSPADARVLVGSCRDTSSLFIKDKFFSFDELLGGERLPWLNAL
RDGDFALFRLTPDKYHYNHTPVSGEVADIYTIDGEFNSCNPEAIVAMATPYSKNRRVVTIINTDVKGGSNVGLVAMIEVV
ALMIGDIVQCYSAERYLDPQPITRGMFVKKGQPKSLYRPGSSTDIVIFQKGRVSFAADLLENQARIDATSRFSQGFSIPL
VETDIRVRALLASAR

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 2 subfamily [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6321609, Length=234, Percent_Identity=25.6410256410256, Blast_Score=80, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 37652; Mature: 37652

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTTRHQYIARESGAVCDEALFGDRFVRLMYHGVRENAPGLFRLLTSPRMTGILGYVNYD
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHEEEEEEEEC
LPFASGGSACARFLHQLKVDLSECLLRPEELDTPRKVFERRIRYWECRPMPERAEEVVSP
CCCCCCHHHHHHHHHHHHHCHHHHCCCCHHCCCHHHHHHHHHHEEECCCCHHHHHHHCCC
ADARVLVGSCRDTSSLFIKDKFFSFDELLGGERLPWLNALRDGDFALFRLTPDKYHYNHT
CCCEEEEECCCCCCEEEEEHHHCCHHHHHCCCCCCHHHHHCCCCEEEEEECCCCEECCCC
PVSGEVADIYTIDGEFNSCNPEAIVAMATPYSKNRRVVTIINTDVKGGSNVGLVAMIEVV
CCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH
ALMIGDIVQCYSAERYLDPQPITRGMFVKKGQPKSLYRPGSSTDIVIFQKGRVSFAADLL
HHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHCCCCCCCEEEEEECCCHHHHHHHH
ENQARIDATSRFSQGFSIPLVETDIRVRALLASAR
HHHHHCCHHHHHCCCCCCEEEECCHHHHHHHHCCC
>Mature Secondary Structure
MQTTRHQYIARESGAVCDEALFGDRFVRLMYHGVRENAPGLFRLLTSPRMTGILGYVNYD
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHEEEEEEEEC
LPFASGGSACARFLHQLKVDLSECLLRPEELDTPRKVFERRIRYWECRPMPERAEEVVSP
CCCCCCHHHHHHHHHHHHHCHHHHCCCCHHCCCHHHHHHHHHHEEECCCCHHHHHHHCCC
ADARVLVGSCRDTSSLFIKDKFFSFDELLGGERLPWLNALRDGDFALFRLTPDKYHYNHT
CCCEEEEECCCCCCEEEEEHHHCCHHHHHCCCCCCHHHHHCCCCEEEEEECCCCEECCCC
PVSGEVADIYTIDGEFNSCNPEAIVAMATPYSKNRRVVTIINTDVKGGSNVGLVAMIEVV
CCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH
ALMIGDIVQCYSAERYLDPQPITRGMFVKKGQPKSLYRPGSSTDIVIFQKGRVSFAADLL
HHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHCCCCCCCEEEEEECCCHHHHHHHH
ENQARIDATSRFSQGFSIPLVETDIRVRALLASAR
HHHHHCCHHHHHCCCCCCEEEECCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA