| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118199
Identifier: 197118199
GI number: 197118199
Start: 2098265
End: 2099605
Strand: Direct
Name: 197118199
Synonym: Gbem_1814
Alternate gene names: NA
Gene position: 2098265-2099605 (Clockwise)
Preceding gene: 197118198
Following gene: 197118200
Centisome position: 45.46
GC content: 69.35
Gene sequence:
>1341_bases ATGAGATTCCCGCTTCTTTCGCTCTGCCTCATGGCGCTCATGAGCCCGGCGGCGGCAGGCGCCGAGGAGGCCGGCCCCGC CGCAGAACCGCTCCGTCTCGAACTGAAGCTGGCAAGGGCGCGGGTCTACCCGCGCATGCCGGTCCCGGTGACGGTAAGGC TCATGGTGCGGGATGCGCAGTTGCGCGGGATAGGCTACCCCCGGCTTTCCCACCGCACTTTGCAGGTGGGGGAGTTCTCG CTTCCCGCGAAGCGCGAGCTGGTTTTGGAGGGGGCCACTTACACCGCCTACGACTTCACCACCGTAGTCAGCGCCAGGCA AAGCGGGAGCTACCGTTTGGGCCCGGCCGAGCTGGAAGCCGAACTACTCTCCCCGGCGTCCGGCGCGGCGGCCTTTTTCG GCGCCACCGAATCGAAGCCGGTCGCGCTCAAGTCGCAGCCGCTTGCCCTCACCGTGCTCCCCGTCCCGATGCAGGGGCGC CCGGACGGCTTTACCGGCGCAGTCGGGCGCTTCACGGTGAGCGTATCAGCCCGCCCCCGCGAAGTGAGCGCCGGCGACCC GATCACCGTGCGCACCGTGATAAGGGGGGAAGGGGCCGAGCGCGAATTCTCCTGCCGCCCCATCGAGGCCCGCGGCTTCA GGGGGTATCCCCCTGTTCAGGAAAAAGGGGCGGGGGAGCTTGTCTGCGAACAGCTTATGGTGCCGGAGACCGGGGGCGCG GTGGAGATTCCCCCGGTCCGGATCAGCTTCTTCAACCCCTCCGCGGGGCGTTTCGGCACGGCCCAAAGCGAGGCGCTAGC GCTTAAGGTGCGCCCTGCCGCAGCCGCTGCTGCTGCCCTGTCTGACGGGTCTGACAGGTCCGACAGGTCCGACAGGTCCG ACAGGTCCGACAGGTCCGACAAGTCCGACAAGTCCGACAAGTCCGACCGAACAGGCGCCTTCTGGCTGGCGCTTTCCGCT CTCGCGGCGCTCGCAGCTGCCGTCTTACTCTGCAGGAGGCTGCGCCGACAGACGCCGCCGTCCGGCGACGGCAGGCAGGG CTGGCTTGCCGCGGCCCGCTCGGCACACGCCTCCGGCGACGCGAGCGCCTTTTATAGCGCCGCCTTCAGGCTGCTGCAGC GGGTGGGGGGGGAGCGCCAGGGGCTCCCCGCGGCGGGCTGGACCGGCCCGCTGCCGGAGGGTGCGTTCGGCCGGGAGCAG CAGGAGAGCCTTGCCGCGCTCCTTGCGCGCTGCGACCGGGTCCGTTACGGCGGAGAGATCCCGCAGCCCGAGCAGATGGC CGCGGATCTGCTTCTCCTGGAGCAAGCGGAGGGTCCTTCAACGGCATGGGAAAATATTTGA
Upstream 100 bases:
>100_bases GCCTCTTAGCCGAGGAGCGCGGGCGTGAGACGCTGGTGCCGCAGGTTTTGGGTGCCGGCGGCAAGGGGCGCCATGCCCCC GCCGGGAAGGAGTGGTGAAG
Downstream 100 bases:
>100_bases CATTGAATAATGCTTACCGTTTAATGTGTAACGCAGCCTTCCCTTTTTAATTGTGCCAACGCGGCGCCCTTTCTTTTTTC GGCGTATCTAGCCGTCTCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 446; Mature: 446
Protein sequence:
>446_residues MRFPLLSLCLMALMSPAAAGAEEAGPAAEPLRLELKLARARVYPRMPVPVTVRLMVRDAQLRGIGYPRLSHRTLQVGEFS LPAKRELVLEGATYTAYDFTTVVSARQSGSYRLGPAELEAELLSPASGAAAFFGATESKPVALKSQPLALTVLPVPMQGR PDGFTGAVGRFTVSVSARPREVSAGDPITVRTVIRGEGAEREFSCRPIEARGFRGYPPVQEKGAGELVCEQLMVPETGGA VEIPPVRISFFNPSAGRFGTAQSEALALKVRPAAAAAAALSDGSDRSDRSDRSDRSDRSDKSDKSDKSDRTGAFWLALSA LAALAAAVLLCRRLRRQTPPSGDGRQGWLAAARSAHASGDASAFYSAAFRLLQRVGGERQGLPAAGWTGPLPEGAFGREQ QESLAALLARCDRVRYGGEIPQPEQMAADLLLLEQAEGPSTAWENI
Sequences:
>Translated_446_residues MRFPLLSLCLMALMSPAAAGAEEAGPAAEPLRLELKLARARVYPRMPVPVTVRLMVRDAQLRGIGYPRLSHRTLQVGEFS LPAKRELVLEGATYTAYDFTTVVSARQSGSYRLGPAELEAELLSPASGAAAFFGATESKPVALKSQPLALTVLPVPMQGR PDGFTGAVGRFTVSVSARPREVSAGDPITVRTVIRGEGAEREFSCRPIEARGFRGYPPVQEKGAGELVCEQLMVPETGGA VEIPPVRISFFNPSAGRFGTAQSEALALKVRPAAAAAAALSDGSDRSDRSDRSDRSDRSDKSDKSDKSDRTGAFWLALSA LAALAAAVLLCRRLRRQTPPSGDGRQGWLAAARSAHASGDASAFYSAAFRLLQRVGGERQGLPAAGWTGPLPEGAFGREQ QESLAALLARCDRVRYGGEIPQPEQMAADLLLLEQAEGPSTAWENI >Mature_446_residues MRFPLLSLCLMALMSPAAAGAEEAGPAAEPLRLELKLARARVYPRMPVPVTVRLMVRDAQLRGIGYPRLSHRTLQVGEFS LPAKRELVLEGATYTAYDFTTVVSARQSGSYRLGPAELEAELLSPASGAAAFFGATESKPVALKSQPLALTVLPVPMQGR PDGFTGAVGRFTVSVSARPREVSAGDPITVRTVIRGEGAEREFSCRPIEARGFRGYPPVQEKGAGELVCEQLMVPETGGA VEIPPVRISFFNPSAGRFGTAQSEALALKVRPAAAAAAALSDGSDRSDRSDRSDRSDRSDKSDKSDKSDRTGAFWLALSA LAALAAAVLLCRRLRRQTPPSGDGRQGWLAAARSAHASGDASAFYSAAFRLLQRVGGERQGLPAAGWTGPLPEGAFGREQ QESLAALLARCDRVRYGGEIPQPEQMAADLLLLEQAEGPSTAWENI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47439; Mature: 47439
Theoretical pI: Translated: 8.94; Mature: 8.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFPLLSLCLMALMSPAAAGAEEAGPAAEPLRLELKLARARVYPRMPVPVTVRLMVRDAQ CCCCHHHHHHHHHHCCCCCCCHHCCCCCCCEEEEEEEHHHHCCCCCCCCEEEEEEEEEHH LRGIGYPRLSHRTLQVGEFSLPAKRELVLEGATYTAYDFTTVVSARQSGSYRLGPAELEA HCCCCCCCCCCCEEEECCCCCCCCCEEEEECCEEEEHHHHHHHHHHCCCCCCCCHHHHHH ELLSPASGAAAFFGATESKPVALKSQPLALTVLPVPMQGRPDGFTGAVGRFTVSVSARPR HHHCCCCCCEEEECCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCC EVSAGDPITVRTVIRGEGAEREFSCRPIEARGFRGYPPVQEKGAGELVCEQLMVPETGGA CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCE VEIPPVRISFFNPSAGRFGTAQSEALALKVRPAAAAAAALSDGSDRSDRSDRSDRSDRSD EECCCEEEEEECCCCCCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCC KSDKSDKSDRTGAFWLALSALAALAAAVLLCRRLRRQTPPSGDGRQGWLAAARSAHASGD CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCC ASAFYSAAFRLLQRVGGERQGLPAAGWTGPLPEGAFGREQQESLAALLARCDRVRYGGEI HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC PQPEQMAADLLLLEQAEGPSTAWENI CCHHHHHHHHHHEECCCCCCCCCCCC >Mature Secondary Structure MRFPLLSLCLMALMSPAAAGAEEAGPAAEPLRLELKLARARVYPRMPVPVTVRLMVRDAQ CCCCHHHHHHHHHHCCCCCCCHHCCCCCCCEEEEEEEHHHHCCCCCCCCEEEEEEEEEHH LRGIGYPRLSHRTLQVGEFSLPAKRELVLEGATYTAYDFTTVVSARQSGSYRLGPAELEA HCCCCCCCCCCCEEEECCCCCCCCCEEEEECCEEEEHHHHHHHHHHCCCCCCCCHHHHHH ELLSPASGAAAFFGATESKPVALKSQPLALTVLPVPMQGRPDGFTGAVGRFTVSVSARPR HHHCCCCCCEEEECCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCC EVSAGDPITVRTVIRGEGAEREFSCRPIEARGFRGYPPVQEKGAGELVCEQLMVPETGGA CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCE VEIPPVRISFFNPSAGRFGTAQSEALALKVRPAAAAAAALSDGSDRSDRSDRSDRSDRSD EECCCEEEEEECCCCCCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCC KSDKSDKSDRTGAFWLALSALAALAAAVLLCRRLRRQTPPSGDGRQGWLAAARSAHASGD CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCC ASAFYSAAFRLLQRVGGERQGLPAAGWTGPLPEGAFGREQQESLAALLARCDRVRYGGEI HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC PQPEQMAADLLLLEQAEGPSTAWENI CCHHHHHHHHHHEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA