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The map label for this gene is glxA [H]

Identifier: 197118090

GI number: 197118090

Start: 1968040

End: 1969128

Strand: Reverse

Name: glxA [H]

Synonym: Gbem_1704

Alternate gene names: 197118090

Gene position: 1969128-1968040 (Counterclockwise)

Preceding gene: 197118091

Following gene: 197118089

Centisome position: 42.67

GC content: 63.73

Gene sequence:

>1089_bases
ATGGATGACCGTCAAAATGGCAGGATCTGCTGGTCCATTGTCCTTGAACCTCAGCCGACCTTGTGCAATTATCCCCCCAT
GAAAAAAACCACTACCATATCGAACATAGAGAGCACCGGGCGGCGCAGGATAGCGGTAGCGGCATACCATGGTGCCGAAC
TGCTCGACGTCACCGGCCCCATAGAAGTCTTCAACATGCTGAACCGCTGCCTTGGGGACGAAGAGGCGCTGAAGTGCGGC
TACGAGGTGCTGCTGATGGCAGAGCGACCGGGCCCCTTCGCTTCCTCGCCGGGCATAAGGCTGGTGGCGGACCTCGCCTG
GCAGGAGCTATCCGGTGACACGGACACCATCTTCGTACCGGGGAGCCCGGACGACGCCCTGGCGGAGGCCCTGAAAAACG
AGCATCTGGTGCAGTGGCTGCGCTCGACGCCAGCACTGGCCAGGCGCGTGGTATCGGTCTGTACCGGCGCCTTTCTCCTC
GCCGAGGCTGGGCTCCTCGACGGGCGGCGCGCCACCACCCACTGGATGGACTTGGAGCGGCTGGCCAGGGAATACCCGCA
GGTCATAGTGGAGCAGGACGCCATCTACACGCGTGACGGGGAGATCGCCACTTCGGCCGGGGTCACCGCGGGGATGGACC
TGGCGCTCGCGCTGGTCGAGGAGGATTTCGGCAGGAAGATGGCGCTTACAGTGGCCCGGCGCCTGGTCATGTTCCTGAAG
AGGCCGGGGGGGCAGACACAGTTCAGCACACAGCTGCGCGCCCAGATGGTGGAGGGGGGACAGCTTGCCGCCCTGCTTGC
CTGGCTCAAGGATAATCACTGCCGCAAAGTTACAGTGGAAGAACTGGCCGGGCGGGCGGCGATGAGCCCGCGCAATTTCG
CCAGGGTTTTCCTGCGGGAGACGGGGAAGACACCGGCCAGGTATCTCGACCAACTGCGCCTGGAGCGCTCGATAAACCTG
ATGGAGGATGACGCGCTCTCCCTGGACAGGGTCGCCGCCGAGAGCGGTTTCACCTGCGCCGAACAGATGAGGCGCGTCTT
TATCCGGGAGATGGGGGTCACCCCGCTTGCCTACCGGACGAGGTTTTGA

Upstream 100 bases:

>100_bases
AGCGGGAGGGGGTCAGGGGGTGGGGGTAGGTGTCCCCTCCTGCCTTCGCGGACCGTAGCGCTACGGCGCGCATGCCGTCA
AGGAAGGGGGAGAGCTGGAA

Downstream 100 bases:

>100_bases
GAGGAGGAGGTCGCATGAAATATCTGCTCTGTAAGGGAGAGTTGCTGGCGTTCAAAGCAGGCGCCGCCATCGAGGCGGTA
ACGGTCAACTCGGGAGAGGC

Product: GATase1_AraC_1 family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MDDRQNGRICWSIVLEPQPTLCNYPPMKKTTTISNIESTGRRRIAVAAYHGAELLDVTGPIEVFNMLNRCLGDEEALKCG
YEVLLMAERPGPFASSPGIRLVADLAWQELSGDTDTIFVPGSPDDALAEALKNEHLVQWLRSTPALARRVVSVCTGAFLL
AEAGLLDGRRATTHWMDLERLAREYPQVIVEQDAIYTRDGEIATSAGVTAGMDLALALVEEDFGRKMALTVARRLVMFLK
RPGGQTQFSTQLRAQMVEGGQLAALLAWLKDNHCRKVTVEELAGRAAMSPRNFARVFLRETGKTPARYLDQLRLERSINL
MEDDALSLDRVAAESGFTCAEQMRRVFIREMGVTPLAYRTRF

Sequences:

>Translated_362_residues
MDDRQNGRICWSIVLEPQPTLCNYPPMKKTTTISNIESTGRRRIAVAAYHGAELLDVTGPIEVFNMLNRCLGDEEALKCG
YEVLLMAERPGPFASSPGIRLVADLAWQELSGDTDTIFVPGSPDDALAEALKNEHLVQWLRSTPALARRVVSVCTGAFLL
AEAGLLDGRRATTHWMDLERLAREYPQVIVEQDAIYTRDGEIATSAGVTAGMDLALALVEEDFGRKMALTVARRLVMFLK
RPGGQTQFSTQLRAQMVEGGQLAALLAWLKDNHCRKVTVEELAGRAAMSPRNFARVFLRETGKTPARYLDQLRLERSINL
MEDDALSLDRVAAESGFTCAEQMRRVFIREMGVTPLAYRTRF
>Mature_362_residues
MDDRQNGRICWSIVLEPQPTLCNYPPMKKTTTISNIESTGRRRIAVAAYHGAELLDVTGPIEVFNMLNRCLGDEEALKCG
YEVLLMAERPGPFASSPGIRLVADLAWQELSGDTDTIFVPGSPDDALAEALKNEHLVQWLRSTPALARRVVSVCTGAFLL
AEAGLLDGRRATTHWMDLERLAREYPQVIVEQDAIYTRDGEIATSAGVTAGMDLALALVEEDFGRKMALTVARRLVMFLK
RPGGQTQFSTQLRAQMVEGGQLAALLAWLKDNHCRKVTVEELAGRAAMSPRNFARVFLRETGKTPARYLDQLRLERSINL
MEDDALSLDRVAAESGFTCAEQMRRVFIREMGVTPLAYRTRF

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 40278; Mature: 40278

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDRQNGRICWSIVLEPQPTLCNYPPMKKTTTISNIESTGRRRIAVAAYHGAELLDVTGP
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCEEEECCCH
IEVFNMLNRCLGDEEALKCGYEVLLMAERPGPFASSPGIRLVADLAWQELSGDTDTIFVP
HHHHHHHHHHCCCHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
GSPDDALAEALKNEHLVQWLRSTPALARRVVSVCTGAFLLAEAGLLDGRRATTHWMDLER
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LAREYPQVIVEQDAIYTRDGEIATSAGVTAGMDLALALVEEDFGRKMALTVARRLVMFLK
HHHHHHHHHHHCCCEEECCCCEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
RPGGQTQFSTQLRAQMVEGGQLAALLAWLKDNHCRKVTVEELAGRAAMSPRNFARVFLRE
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEHHHHCCHHCCCHHHHHHHHHHH
TGKTPARYLDQLRLERSINLMEDDALSLDRVAAESGFTCAEQMRRVFIREMGVTPLAYRT
CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHCC
RF
CC
>Mature Secondary Structure
MDDRQNGRICWSIVLEPQPTLCNYPPMKKTTTISNIESTGRRRIAVAAYHGAELLDVTGP
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCEEEECCCH
IEVFNMLNRCLGDEEALKCGYEVLLMAERPGPFASSPGIRLVADLAWQELSGDTDTIFVP
HHHHHHHHHHCCCHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
GSPDDALAEALKNEHLVQWLRSTPALARRVVSVCTGAFLLAEAGLLDGRRATTHWMDLER
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LAREYPQVIVEQDAIYTRDGEIATSAGVTAGMDLALALVEEDFGRKMALTVARRLVMFLK
HHHHHHHHHHHCCCEEECCCCEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
RPGGQTQFSTQLRAQMVEGGQLAALLAWLKDNHCRKVTVEELAGRAAMSPRNFARVFLRE
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEHHHHCCHHCCCHHHHHHHHHHH
TGKTPARYLDQLRLERSINLMEDDALSLDRVAAESGFTCAEQMRRVFIREMGVTPLAYRT
CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHCC
RF
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]