Click here to switch to the map view.

The map label for this gene is ideR [H]

Identifier: 197117977

GI number: 197117977

Start: 1843680

End: 1844324

Strand: Direct

Name: ideR [H]

Synonym: Gbem_1590

Alternate gene names: 197117977

Gene position: 1843680-1844324 (Clockwise)

Preceding gene: 197117976

Following gene: 197117978

Centisome position: 39.95

GC content: 60.0

Gene sequence:

>645_bases
ATGAAGCTGACTGACAAGGCTGAAGAGATACTGGAGGCGTTGTGGATCGAGTCGGAGGAAAAAGGAACCGGCTACGCAGA
ACTGGACCGAATGGAAATAGACGCCTCGGATCCCGCCTATCAAGAACTTGCCTCGCAGGCCCTGGTGGAGATCAAGGGAG
GACGCATCTACTTCCGCCCCGAAGGGCGGGATGAGGGGCGCAACACAATCCGGCGCCACCGCCTCGCCGAAAGGCTGATG
ATGGACGTGCTCAACATCCGCGGCGAGAGCGGGGACATGAAGGCGTGCCAGTTCGAGCACCTTTTGAACGAGGGGGTGGA
CACCAAGGTCTGCACCATGCTGAACCACCCGGTGACCTGCCCGCACGGCAAGCCGATACCTCCCGGGGAGTGCTGCGAGG
AGGCGCGTAAGACCGGTGATCTCGGCGTGGTGCCGCTCACCGAGCTCAAACCCGGCGACGAGGGGGACATAGCCTACATC
CAGACCGAGGACAGCAAGAAGATGCAGAAACTGATGGCCATGGGGGTGCTCCCCGGAAACCGCATCTCGCTTTTACAGGC
TTTCCCGTCCTACATCTTCAGGGTCGGTTTTTCCGAATTCGCCATCGACTCGGCCATGGCCCGCGAAATTTTCGTCAGAC
GATAA

Upstream 100 bases:

>100_bases
ATCCCCCGGAGCCAGCGCTGGTCAAGACACTCAAGAAGGTATTCTCCAAAAAGAAAACAACAAAATGACTGAGAGTTTAT
ATTCGATAAAGGAGCGGTTT

Downstream 100 bases:

>100_bases
AACAGGGGCTAGGGGCTAGGGGCTGGGGACTGGAAAAAACCCGTCCGAAGCTCCAGCTTCCCAGGATGCAAAGCTGGAGC
TTTGCCGTCGCATTGGGTTC

Product: iron/manganese-dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MKLTDKAEEILEALWIESEEKGTGYAELDRMEIDASDPAYQELASQALVEIKGGRIYFRPEGRDEGRNTIRRHRLAERLM
MDVLNIRGESGDMKACQFEHLLNEGVDTKVCTMLNHPVTCPHGKPIPPGECCEEARKTGDLGVVPLTELKPGDEGDIAYI
QTEDSKKMQKLMAMGVLPGNRISLLQAFPSYIFRVGFSEFAIDSAMAREIFVRR

Sequences:

>Translated_214_residues
MKLTDKAEEILEALWIESEEKGTGYAELDRMEIDASDPAYQELASQALVEIKGGRIYFRPEGRDEGRNTIRRHRLAERLM
MDVLNIRGESGDMKACQFEHLLNEGVDTKVCTMLNHPVTCPHGKPIPPGECCEEARKTGDLGVVPLTELKPGDEGDIAYI
QTEDSKKMQKLMAMGVLPGNRISLLQAFPSYIFRVGFSEFAIDSAMAREIFVRR
>Mature_214_residues
MKLTDKAEEILEALWIESEEKGTGYAELDRMEIDASDPAYQELASQALVEIKGGRIYFRPEGRDEGRNTIRRHRLAERLM
MDVLNIRGESGDMKACQFEHLLNEGVDTKVCTMLNHPVTCPHGKPIPPGECCEEARKTGDLGVVPLTELKPGDEGDIAYI
QTEDSKKMQKLMAMGVLPGNRISLLQAFPSYIFRVGFSEFAIDSAMAREIFVRR

Specific function: Metal-dependent DNA-binding protein that controls transcription of many genes involved in iron metabolism [H]

COG id: COG1321

COG function: function code K; Mn-dependent transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH dtxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007167
- InterPro:   IPR001367
- InterPro:   IPR022689
- InterPro:   IPR022687
- InterPro:   IPR008988
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02742 Fe_dep_repr_C; PF01325 Fe_dep_repress; PF04023 FeoA [H]

EC number: NA

Molecular weight: Translated: 24050; Mature: 24050

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTDKAEEILEALWIESEEKGTGYAELDRMEIDASDPAYQELASQALVEIKGGRIYFRP
CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHEEECCCCHHHHHHHHHHHHEECCCEEEECC
EGRDEGRNTIRRHRLAERLMMDVLNIRGESGDMKACQFEHLLNEGVDTKVCTMLNHPVTC
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCC
PHGKPIPPGECCEEARKTGDLGVVPLTELKPGDEGDIAYIQTEDSKKMQKLMAMGVLPGN
CCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCC
RISLLQAFPSYIFRVGFSEFAIDSAMAREIFVRR
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKLTDKAEEILEALWIESEEKGTGYAELDRMEIDASDPAYQELASQALVEIKGGRIYFRP
CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHEEECCCCHHHHHHHHHHHHEECCCEEEECC
EGRDEGRNTIRRHRLAERLMMDVLNIRGESGDMKACQFEHLLNEGVDTKVCTMLNHPVTC
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCC
PHGKPIPPGECCEEARKTGDLGVVPLTELKPGDEGDIAYIQTEDSKKMQKLMAMGVLPGN
CCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCC
RISLLQAFPSYIFRVGFSEFAIDSAMAREIFVRR
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]