Click here to switch to the map view.

The map label for this gene is 197117944

Identifier: 197117944

GI number: 197117944

Start: 1807067

End: 1808239

Strand: Direct

Name: 197117944

Synonym: Gbem_1557

Alternate gene names: NA

Gene position: 1807067-1808239 (Clockwise)

Preceding gene: 197117943

Following gene: 197117945

Centisome position: 39.16

GC content: 63.09

Gene sequence:

>1173_bases
ATGGTAGAGGACGCTTTATCCTTCTGGACGGAGATACAGCGCTACGAGGACATGCTGGCAACCGATGCCAAGAACTTGTG
CTTCGCGCCCCTCTCGGAGCTGTACCGAAAGCTTGGCCTTCTGGACGATGCCATCATGGTGGCTGAGAAAGGGTGCGCCG
CACATCCCGACCTCCCTGCCGGTTTCCTGGCCCTTGGCACTGCCTGTTACGCGAAGGGGCTTACCGGCCAGGCGCGCAAC
GCCTTGGAGCGGGCGGTGGCGCTCGAGCCGAATCATCTTGAGGCCCTGAAACTACTGGGTCAGCTCTACGTGGAACAAAA
TGAGGTGGTCCTGGCGCGCAAGGTGCTGGAGCAGGTGCTGCAACAGGACCCGGACGACCTGGAGAGTTCGCTTTTGTTGA
ACTCGGTCGCCGTCACTCCCTCCCAGGAGGAACCCGAAGAAGTGCTGGAGAACATCGAGATCATAGAGGAACTGGAGGAG
GTGGTGGAAGAGGATTTTGCCGCTCCCCTCCGTCCCGCGGTGGAACCGGCCCGCCCCCAGGCGCCGGCTGCCGCGGCACC
CCTGGAAGACGACGACATCTGGGCCATCGAGGACCTGGAAGAGGTCGAGGTCGAGCCTCTCCCCCCGCAACGGAGCGACG
CTGCCACCCCCGATCCGCTTACGACTGCGACCCTGGCGGAACTCTACGTCTCCCAGGGGTTCGTCGAGAAGGCGCTGGGG
ATCTACCGGGAGCTCATCACAGCGCACCCGTCCAACTCGCAGTACCGGCTGCGCTGCGCGGAACTTCAGGAAATGCTGGA
ATTGCAGCAGATGCCGGTCGAATCCGCAGGAGCGGCAAAGGGACCGGCTGCCGCGACGGCGCCCGCCGCGGAACTGCTGG
AGGACACTGACGATTTTGAAGCCGGCTGGGATGTCCCGGTCGAGCCGGAAGGCATGGCTGAAGCAGAGCGGAACTCCGAA
CTGGTGATACCTGCCGCCTTGGAGACGCCGGCTAAGCTGGAATTTCCTGCAACCGCCGAGGCGGCGTTTGCCATCGAATC
CCCGGCCGTAATGGAAGAGCCTGCCCTGGAGGTATTGGAGACGCGGAGCGCGCCGACCGGTGGCGCAGGCGAAGCCGAGG
TCGAGCTGCAACGCTGGCTGGAAAACATAAGGAGAAGAAAAGATGGGGTTTAA

Upstream 100 bases:

>100_bases
GGACTCTTGTTCATCTGCAACCAGGGGATTGGTGCCTACCGCATGGAAAGGCTCACCGACCTGGGGGCGCTTCTGGAGAT
CTGTGGCATAGGAGAATGAC

Downstream 100 bases:

>100_bases
GGCGATACTCAAGTCGATCGTTGAGGAAAGCGGCGGCGGCCTTGGCGGCGTCATCATGGGATACGACGGCATCTCCATCG
ATGAATATGTGAAGCAATCG

Product: hypothetical protein

Products: NA

Alternate protein names: Tetratricopeptide TPR_2 Repeat Protein; TPR Domain-Containing Protein; Tetratricopeptide Domain Protein

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MVEDALSFWTEIQRYEDMLATDAKNLCFAPLSELYRKLGLLDDAIMVAEKGCAAHPDLPAGFLALGTACYAKGLTGQARN
ALERAVALEPNHLEALKLLGQLYVEQNEVVLARKVLEQVLQQDPDDLESSLLLNSVAVTPSQEEPEEVLENIEIIEELEE
VVEEDFAAPLRPAVEPARPQAPAAAAPLEDDDIWAIEDLEEVEVEPLPPQRSDAATPDPLTTATLAELYVSQGFVEKALG
IYRELITAHPSNSQYRLRCAELQEMLELQQMPVESAGAAKGPAAATAPAAELLEDTDDFEAGWDVPVEPEGMAEAERNSE
LVIPAALETPAKLEFPATAEAAFAIESPAVMEEPALEVLETRSAPTGGAGEAEVELQRWLENIRRRKDGV

Sequences:

>Translated_390_residues
MVEDALSFWTEIQRYEDMLATDAKNLCFAPLSELYRKLGLLDDAIMVAEKGCAAHPDLPAGFLALGTACYAKGLTGQARN
ALERAVALEPNHLEALKLLGQLYVEQNEVVLARKVLEQVLQQDPDDLESSLLLNSVAVTPSQEEPEEVLENIEIIEELEE
VVEEDFAAPLRPAVEPARPQAPAAAAPLEDDDIWAIEDLEEVEVEPLPPQRSDAATPDPLTTATLAELYVSQGFVEKALG
IYRELITAHPSNSQYRLRCAELQEMLELQQMPVESAGAAKGPAAATAPAAELLEDTDDFEAGWDVPVEPEGMAEAERNSE
LVIPAALETPAKLEFPATAEAAFAIESPAVMEEPALEVLETRSAPTGGAGEAEVELQRWLENIRRRKDGV
>Mature_390_residues
MVEDALSFWTEIQRYEDMLATDAKNLCFAPLSELYRKLGLLDDAIMVAEKGCAAHPDLPAGFLALGTACYAKGLTGQARN
ALERAVALEPNHLEALKLLGQLYVEQNEVVLARKVLEQVLQQDPDDLESSLLLNSVAVTPSQEEPEEVLENIEIIEELEE
VVEEDFAAPLRPAVEPARPQAPAAAAPLEDDDIWAIEDLEEVEVEPLPPQRSDAATPDPLTTATLAELYVSQGFVEKALG
IYRELITAHPSNSQYRLRCAELQEMLELQQMPVESAGAAKGPAAATAPAAELLEDTDDFEAGWDVPVEPEGMAEAERNSE
LVIPAALETPAKLEFPATAEAAFAIESPAVMEEPALEVLETRSAPTGGAGEAEVELQRWLENIRRRKDGV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42394; Mature: 42394

Theoretical pI: Translated: 3.84; Mature: 3.84

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEDALSFWTEIQRYEDMLATDAKNLCFAPLSELYRKLGLLDDAIMVAEKGCAAHPDLPA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCH
GFLALGTACYAKGLTGQARNALERAVALEPNHLEALKLLGQLYVEQNEVVLARKVLEQVL
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
QQDPDDLESSLLLNSVAVTPSQEEPEEVLENIEIIEELEEVVEEDFAAPLRPAVEPARPQ
HCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
APAAAAPLEDDDIWAIEDLEEVEVEPLPPQRSDAATPDPLTTATLAELYVSQGFVEKALG
CCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IYRELITAHPSNSQYRLRCAELQEMLELQQMPVESAGAAKGPAAATAPAAELLEDTDDFE
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
AGWDVPVEPEGMAEAERNSELVIPAALETPAKLEFPATAEAAFAIESPAVMEEPALEVLE
CCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHEECCCCHHHHHHHHHHH
TRSAPTGGAGEAEVELQRWLENIRRRKDGV
HCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVEDALSFWTEIQRYEDMLATDAKNLCFAPLSELYRKLGLLDDAIMVAEKGCAAHPDLPA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCH
GFLALGTACYAKGLTGQARNALERAVALEPNHLEALKLLGQLYVEQNEVVLARKVLEQVL
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
QQDPDDLESSLLLNSVAVTPSQEEPEEVLENIEIIEELEEVVEEDFAAPLRPAVEPARPQ
HCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
APAAAAPLEDDDIWAIEDLEEVEVEPLPPQRSDAATPDPLTTATLAELYVSQGFVEKALG
CCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IYRELITAHPSNSQYRLRCAELQEMLELQQMPVESAGAAKGPAAATAPAAELLEDTDDFE
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
AGWDVPVEPEGMAEAERNSELVIPAALETPAKLEFPATAEAAFAIESPAVMEEPALEVLE
CCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHEECCCCHHHHHHHHHHH
TRSAPTGGAGEAEVELQRWLENIRRRKDGV
HCCCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA