| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is bamA [H]
Identifier: 197117830
GI number: 197117830
Start: 1666047
End: 1667186
Strand: Direct
Name: bamA [H]
Synonym: Gbem_1443
Alternate gene names: 197117830
Gene position: 1666047-1667186 (Clockwise)
Preceding gene: 197117829
Following gene: 197117831
Centisome position: 36.1
GC content: 62.72
Gene sequence:
>1140_bases GTGGCAACTACCGACGAGATCATCAAGAGAACCGCACCGTCCCATCTGATCGATCACAACCTGATCGACCGCGACGTGGA GAGCCTTTGCGACGGGATGGTGAAGTACGAGAAGCGTCCCGCGAAGAGAAAGGACGGCAGCGTGGTGCAGGGGCTGTACA ACGCCTGGATCATCTTCAACAACCCCAAGCAGTTCAACTCCTATACCACCGACATGGTGAAGGCGACCATCCTGGCCTTT CGCCGCGCTTCCGTCGACCGCGAGGTCAACGCCGTGGTCTTCACCGGCGTGGGGGAGAAGGCTTTCTGCACCGGCGGCAA CACCAAGGAGTACGCGGAGTACTACGCGGGGAACCCGCAGGAGTACCGCCAGTACATGCGGCTCTTCAACGACATGGTTT CCGCCATCCTCGGGTGCGACAAGCCGGTCGTCTGCAGGGTGAACGGGATGAGGATTGGCGGCGGCCAGGAGATCGGCATG GCCTGCGACTTCAGCGTCGCGCACGACTTGGCCAACTTCGGCCAGGCCGGTCCCAAGCACGGTTCCGCTGCCATCGGCGG CGCTACCGACTTCCTCCCGGTCATGATCGGCTGCGAGCAGGCCATGGTCTCCGGCACGCTGTGCGAGCCGTTCTCGGCGC ACAAGGCGGCGCGTCTGGGCATCATCGCAGACGTGGTTCCGGCGCTTAAGATCGACGGCAAGTTCGTCGCCAATCCGACG GTCGTCACCGACAAGTTCCTGGACGAGTACGGCCGTGTCATCCACGGCGAGTTCAGGACCGGCGCCCAGTTCAAGGAAGG GCAGGCCCTTATCAAGGAAGGGGAGATCGACCTCTCCATGCTGGACCAGAAGGTGGATGAACTCTGCGCGAAGCTGATCG ACACCTTCCCCGAGTGCATGACCAAGAGCCTCGAGGAGTTGAGGAAGCCGAAGCTGGACGCCTGGAACGCCAACAAGGAA AACTCCAGGGCATGGCTCGCGCTCAACATGATGAACGAGGCGCGCACCGGCTTCAGGGCCTTCAACGAGGGGACCAAGGA GACCGGCCGCGAGATCGAATTCGTGAAGCTGCGCCAGGGGTTGGCCGTCGGTACCCCCTGGACCGAGGAGCTCGTGGACA GCCTGATGCCGGGAGCGTAG
Upstream 100 bases:
>100_bases TTTTTTTTCTTGACATAAAAGTGGTATTAAAGTACTTATTTACTCAAATAGAAATTTCGACATGCAACTCAAACCATAAA AAGAAGTCAAGGGGGAAGCC
Downstream 100 bases:
>100_bases GGGTAGGCGGATCAAGATGTGCCGCGGCAGGTGCGCGAGCGCTCCGCGGCACGCCTTAAAATGGTAAAAAAGTACTTTTA TGCCAGAACTGGCATCGGTC
Product: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase
Products: NA
Alternate protein names: DHNA-CoA synthase [H]
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MATTDEIIKRTAPSHLIDHNLIDRDVESLCDGMVKYEKRPAKRKDGSVVQGLYNAWIIFNNPKQFNSYTTDMVKATILAF RRASVDREVNAVVFTGVGEKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVVCRVNGMRIGGGQEIGM ACDFSVAHDLANFGQAGPKHGSAAIGGATDFLPVMIGCEQAMVSGTLCEPFSAHKAARLGIIADVVPALKIDGKFVANPT VVTDKFLDEYGRVIHGEFRTGAQFKEGQALIKEGEIDLSMLDQKVDELCAKLIDTFPECMTKSLEELRKPKLDAWNANKE NSRAWLALNMMNEARTGFRAFNEGTKETGREIEFVKLRQGLAVGTPWTEELVDSLMPGA
Sequences:
>Translated_379_residues MATTDEIIKRTAPSHLIDHNLIDRDVESLCDGMVKYEKRPAKRKDGSVVQGLYNAWIIFNNPKQFNSYTTDMVKATILAF RRASVDREVNAVVFTGVGEKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVVCRVNGMRIGGGQEIGM ACDFSVAHDLANFGQAGPKHGSAAIGGATDFLPVMIGCEQAMVSGTLCEPFSAHKAARLGIIADVVPALKIDGKFVANPT VVTDKFLDEYGRVIHGEFRTGAQFKEGQALIKEGEIDLSMLDQKVDELCAKLIDTFPECMTKSLEELRKPKLDAWNANKE NSRAWLALNMMNEARTGFRAFNEGTKETGREIEFVKLRQGLAVGTPWTEELVDSLMPGA >Mature_378_residues ATTDEIIKRTAPSHLIDHNLIDRDVESLCDGMVKYEKRPAKRKDGSVVQGLYNAWIIFNNPKQFNSYTTDMVKATILAFR RASVDREVNAVVFTGVGEKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVVCRVNGMRIGGGQEIGMA CDFSVAHDLANFGQAGPKHGSAAIGGATDFLPVMIGCEQAMVSGTLCEPFSAHKAARLGIIADVVPALKIDGKFVANPTV VTDKFLDEYGRVIHGEFRTGAQFKEGQALIKEGEIDLSMLDQKVDELCAKLIDTFPECMTKSLEELRKPKLDAWNANKEN SRAWLALNMMNEARTGFRAFNEGTKETGREIEFVKLRQGLAVGTPWTEELVDSLMPGA
Specific function: Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA) [H]
COG id: COG0447
COG function: function code H; Dihydroxynaphthoic acid synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI194097323, Length=194, Percent_Identity=28.3505154639175, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI1788597, Length=182, Percent_Identity=33.5164835164835, Blast_Score=105, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17554946, Length=187, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17535521, Length=234, Percent_Identity=22.6495726495727, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17549921, Length=173, Percent_Identity=28.3236994219653, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI20129971, Length=182, Percent_Identity=33.5164835164835, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24653477, Length=182, Percent_Identity=33.5164835164835, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24654903, Length=241, Percent_Identity=27.3858921161826, Blast_Score=69, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014748 - InterPro: IPR001753 - InterPro: IPR018376 - InterPro: IPR010198 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.1.3.36 [H]
Molecular weight: Translated: 41789; Mature: 41658
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATTDEIIKRTAPSHLIDHNLIDRDVESLCDGMVKYEKRPAKRKDGSVVQGLYNAWIIFN CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHEEEEEC NPKQFNSYTTDMVKATILAFRRASVDREVNAVVFTGVGEKAFCTGGNTKEYAEYYAGNPQ CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCCCHHHHHHHHCCCHH EYRQYMRLFNDMVSAILGCDKPVVCRVNGMRIGGGQEIGMACDFSVAHDLANFGQAGPKH HHHHHHHHHHHHHHHHHCCCCCEEEEECCEEECCCCCCCCEECHHHHHHHHHHCCCCCCC GSAAIGGATDFLPVMIGCEQAMVSGTLCEPFSAHKAARLGIIADVVPALKIDGKFVANPT CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEECCEEECCCC VVTDKFLDEYGRVIHGEFRTGAQFKEGQALIKEGEIDLSMLDQKVDELCAKLIDTFPECM HHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH TKSLEELRKPKLDAWNANKENSRAWLALNMMNEARTGFRAFNEGTKETGREIEFVKLRQG HHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCHHHHCCCEEHHHHHCC LAVGTPWTEELVDSLMPGA CCCCCCCHHHHHHHHCCCC >Mature Secondary Structure ATTDEIIKRTAPSHLIDHNLIDRDVESLCDGMVKYEKRPAKRKDGSVVQGLYNAWIIFN CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHEEEEEC NPKQFNSYTTDMVKATILAFRRASVDREVNAVVFTGVGEKAFCTGGNTKEYAEYYAGNPQ CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCCCHHHHHHHHCCCHH EYRQYMRLFNDMVSAILGCDKPVVCRVNGMRIGGGQEIGMACDFSVAHDLANFGQAGPKH HHHHHHHHHHHHHHHHHCCCCCEEEEECCEEECCCCCCCCEECHHHHHHHHHHCCCCCCC GSAAIGGATDFLPVMIGCEQAMVSGTLCEPFSAHKAARLGIIADVVPALKIDGKFVANPT CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEECCEEECCCC VVTDKFLDEYGRVIHGEFRTGAQFKEGQALIKEGEIDLSMLDQKVDELCAKLIDTFPECM HHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH TKSLEELRKPKLDAWNANKENSRAWLALNMMNEARTGFRAFNEGTKETGREIEFVKLRQG HHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCHHHHCCCEEHHHHHCC LAVGTPWTEELVDSLMPGA CCCCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]