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The map label for this gene is cmoA [H]

Identifier: 197117791

GI number: 197117791

Start: 1616669

End: 1617481

Strand: Reverse

Name: cmoA [H]

Synonym: Gbem_1403

Alternate gene names: 197117791

Gene position: 1617481-1616669 (Counterclockwise)

Preceding gene: 197117792

Following gene: 197117790

Centisome position: 35.05

GC content: 57.44

Gene sequence:

>813_bases
ATGTTCCGCGGCAAACCAGTTAATCTTCGACTTTCTTTTTTTGCCCAACACCCCAGCTCGAAAAAGGACAAGAAGAAGGT
GACCAGAAAAACCGACGATATCTTTGCTGCGCCTCTGCAGGAAATGATCGATTTTAAATTCGATGAACGCGTAGTCGCAG
TCTTTCCCGACATGATACAACGCTCGGTCCCCGGTTACGGGATGATCATATCCAACATCGGCATCCTCGCCGCCAAGTAC
GCCCAGGCCGGAAGTCACTGCTACGATCTCGGCTGCTCCCTCGGGGCCGCTACCCTCTCCATGCGCCAGCGAATCAGCCA
GCCCAACTGCGACATAATCGCCGTCGACAACTCCCCGGCCATGATCGAGCGCGGCCGTGAACTCCTGGCACGCGATTCCC
AGCCGACCGTCCCGGTGGCGCTGATCTGTGCCAATATCCAGGACGTCGTCATCGAGAACGCCTCGGTCGTCGTCCTAAAC
TTCACCCTGCAGTTCATTCCCCCGGAGCAACGTCTGGCCCTGATCAAGCGGATCCATGCCGGGCTCAGGCCGGGCGGCAT
CCTCATCCTCTCCGAAAAGATAGCTTTCAGCGAGCCGGCGCGGCAGCACTTTCACGTAGAAATGCATCACGACTTCAAAC
GGGCCAACGGTTACAGCGATATGGAGATCAGCCAAAAGCGGTCGGCGCTGGAAAACGTGATGATCCCGGAGACCGTCGCC
TGCCACCAGGAGCGGCTGCTGCAGGCTGGCTTCTCCTCCTCCGAGCTTTGGTTCCAGTGCTTCAACTTCGCCTCCATGGT
CGCATTTAAATGA

Upstream 100 bases:

>100_bases
GCCGATGCCGAGGCTGCCGCAATGGGAGGGAGGGGCGGAGCTGAAGCTGTTCAAGCTAAGGCGGGAGTAAGATAAAGCCA
TACTGCATAACAAGGGGTTG

Downstream 100 bases:

>100_bases
GCAACTACGACGCCCTCTATCGCCAGCTAGCCGCCATGGGTCAGGAACGCTGGGCAGAGCAGCTGCAAGCGACCCTGCCG
GATAAACTGGCCCTCGAAAG

Product: tRNA (5-oxyacetic acid-U34)-carboxyltransferase/methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MFRGKPVNLRLSFFAQHPSSKKDKKKVTRKTDDIFAAPLQEMIDFKFDERVVAVFPDMIQRSVPGYGMIISNIGILAAKY
AQAGSHCYDLGCSLGAATLSMRQRISQPNCDIIAVDNSPAMIERGRELLARDSQPTVPVALICANIQDVVIENASVVVLN
FTLQFIPPEQRLALIKRIHAGLRPGGILILSEKIAFSEPARQHFHVEMHHDFKRANGYSDMEISQKRSALENVMIPETVA
CHQERLLQAGFSSSELWFQCFNFASMVAFK

Sequences:

>Translated_270_residues
MFRGKPVNLRLSFFAQHPSSKKDKKKVTRKTDDIFAAPLQEMIDFKFDERVVAVFPDMIQRSVPGYGMIISNIGILAAKY
AQAGSHCYDLGCSLGAATLSMRQRISQPNCDIIAVDNSPAMIERGRELLARDSQPTVPVALICANIQDVVIENASVVVLN
FTLQFIPPEQRLALIKRIHAGLRPGGILILSEKIAFSEPARQHFHVEMHHDFKRANGYSDMEISQKRSALENVMIPETVA
CHQERLLQAGFSSSELWFQCFNFASMVAFK
>Mature_270_residues
MFRGKPVNLRLSFFAQHPSSKKDKKKVTRKTDDIFAAPLQEMIDFKFDERVVAVFPDMIQRSVPGYGMIISNIGILAAKY
AQAGSHCYDLGCSLGAATLSMRQRISQPNCDIIAVDNSPAMIERGRELLARDSQPTVPVALICANIQDVVIENASVVVLN
FTLQFIPPEQRLALIKRIHAGLRPGGILILSEKIAFSEPARQHFHVEMHHDFKRANGYSDMEISQKRSALENVMIPETVA
CHQERLLQAGFSSSELWFQCFNFASMVAFK

Specific function: Catalyzes the conversion of 5-methoxyuridine (mo5U) to uridine-5-oxyacetic acid (cmo5U) at position 8 in tRNA. May also participate in the methylation of uridine-5-oxyacetic acid (cmo5U) to uridine-5-oxyacetic acid methyl ester (mcmo5U) [H]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoA family [H]

Homologues:

Organism=Escherichia coli, GI1788177, Length=239, Percent_Identity=60.2510460251046, Blast_Score=300, Evalue=8e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216
- InterPro:   IPR005271 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: NA

Molecular weight: Translated: 30238; Mature: 30238

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRGKPVNLRLSFFAQHPSSKKDKKKVTRKTDDIFAAPLQEMIDFKFDERVVAVFPDMIQ
CCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHH
RSVPGYGMIISNIGILAAKYAQAGSHCYDLGCSLGAATLSMRQRISQPNCDIIAVDNSPA
HCCCCCEEHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHCCCCCCCEEEECCCCH
MIERGRELLARDSQPTVPVALICANIQDVVIENASVVVLNFTLQFIPPEQRLALIKRIHA
HHHHHHHHHHCCCCCCCCHHHHHHCHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHC
GLRPGGILILSEKIAFSEPARQHFHVEMHHDFKRANGYSDMEISQKRSALENVMIPETVA
CCCCCCEEEEECCHHCCCCHHHHEEEEEHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHH
CHQERLLQAGFSSSELWFQCFNFASMVAFK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFRGKPVNLRLSFFAQHPSSKKDKKKVTRKTDDIFAAPLQEMIDFKFDERVVAVFPDMIQ
CCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHH
RSVPGYGMIISNIGILAAKYAQAGSHCYDLGCSLGAATLSMRQRISQPNCDIIAVDNSPA
HCCCCCEEHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHCCCCCCCEEEECCCCH
MIERGRELLARDSQPTVPVALICANIQDVVIENASVVVLNFTLQFIPPEQRLALIKRIHA
HHHHHHHHHHCCCCCCCCHHHHHHCHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHC
GLRPGGILILSEKIAFSEPARQHFHVEMHHDFKRANGYSDMEISQKRSALENVMIPETVA
CCCCCCEEEEECCHHCCCCHHHHEEEEEHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHH
CHQERLLQAGFSSSELWFQCFNFASMVAFK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA