| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117787
Identifier: 197117787
GI number: 197117787
Start: 1612789
End: 1613886
Strand: Reverse
Name: 197117787
Synonym: Gbem_1399
Alternate gene names: NA
Gene position: 1613886-1612789 (Counterclockwise)
Preceding gene: 197117789
Following gene: 197117778
Centisome position: 34.97
GC content: 53.55
Gene sequence:
>1098_bases ATGGCATCACTGGATTTTGAGCAGGAAAAAGAACTATTCAGGAAGTACTACGACAGGAACCACAAGCAGTTGACTGCGGC CAAGGATGCCTACGTCGGCATTGTCAGGACATTGATCAGGCAAAGCGATGTAGGTGAGGCCACCAAAATAGAAGGGCGCG TCAAGGACAAAGATGAGTGCATCAAGAAGTTCCAGCGTAAGTACCAGGGCAAGTTGGAGGCCGACGAACAACCCTACAGC ATCAGTGACTTCATATCCGACTTGATAGGCGTCAGGATCGTCTGTCTCTACGAGGATGAAGTTCCCGTGGTGTCGGAATT GCTGCAGCGGCACTTCAAGATACTGAACGTTACCGATAAAACCTCTGCAGTGGAAAGCACGGAAGATTCCTTCGGCTACA AAGGTCTGCACATGGACCTGACCCTGAATCCCGATGCCGCTTACCCCTGCAAACACCTCCCGGCGGCGGAGATGTGCTTC GAGGTTCAGATCAGGTCCCTGATCCAGGACGCCTGGAGCATGCTGGACCACAAGATCAAGTACAAGAGATCGATCCCCGT AGATCTGAAGCGCAGGATCAATGTCCTCGCCGCCCTTTTCGAACTGGCGGACCGCGAATTCAAGGAGATCAGGAACGCCA CTTCGGACCTGATGCAGCAGGCGACGGTCACTCAGATCGAGCCCGCCGACGGCATAGTGGAAGCGTCAGGGCAGGCGGCA GCTGCCGCCACAAAAACGGTGAACGTCTTCAACTTCCTCCCCATAGCAGGGCATTTCTTCAGGGATTTCCCTTTCGATGA CCAAAAGGTGGACGATTTTGTCCAGGACATACTGGAGCGGGACGGCACTTTGCAGAAGGCCGATCTGCACCGGTGCCTGA ACGAGAATCTGAAGGTGGTCAGGGAGTACAGCGAGCATGTGATCGCAGAAAACCCCAACCGTACCTTCACTGCCTACACC TCGATCAGGCATTGTCTTTATCTCTATAACCAGGAGAAATTCGAGCGGATCTTGTCGAGAAGAAACAGGGAGCGCTTCGC GGCATGGCTGAAGGTAAACCCGACAACGCAGCAGCTTGTTAATCCGGCTTCAGTTTAA
Upstream 100 bases:
>100_bases CTAAGCGAGTCATTATCACTCGCAATTGGCTTGATAACAGGGTAGAGTGATGCGGCCTTTGGCGTGGAAAGCGCAGGCTT GACGGATGAGGAACTGAAAC
Downstream 100 bases:
>100_bases TCGCGGGTCGCCTCCCGGCCCTTAGCGCGCGGCAAAGACCGAGGTCGCGCGCAGCTTTAAAACCGGACGCGCGCTGAGCG CAGCGGCTACCACACTGACG
Product: RelA/SpoT domain-containing protein
Products: NA
Alternate protein names: RelA/SpoT Domain Protein; GTP Pyrophosphokinase; Region Found In RelA / SpoT Proteins; RelA/SpoT; Rela/Spot Domain Protein
Number of amino acids: Translated: 365; Mature: 364
Protein sequence:
>365_residues MASLDFEQEKELFRKYYDRNHKQLTAAKDAYVGIVRTLIRQSDVGEATKIEGRVKDKDECIKKFQRKYQGKLEADEQPYS ISDFISDLIGVRIVCLYEDEVPVVSELLQRHFKILNVTDKTSAVESTEDSFGYKGLHMDLTLNPDAAYPCKHLPAAEMCF EVQIRSLIQDAWSMLDHKIKYKRSIPVDLKRRINVLAALFELADREFKEIRNATSDLMQQATVTQIEPADGIVEASGQAA AAATKTVNVFNFLPIAGHFFRDFPFDDQKVDDFVQDILERDGTLQKADLHRCLNENLKVVREYSEHVIAENPNRTFTAYT SIRHCLYLYNQEKFERILSRRNRERFAAWLKVNPTTQQLVNPASV
Sequences:
>Translated_365_residues MASLDFEQEKELFRKYYDRNHKQLTAAKDAYVGIVRTLIRQSDVGEATKIEGRVKDKDECIKKFQRKYQGKLEADEQPYS ISDFISDLIGVRIVCLYEDEVPVVSELLQRHFKILNVTDKTSAVESTEDSFGYKGLHMDLTLNPDAAYPCKHLPAAEMCF EVQIRSLIQDAWSMLDHKIKYKRSIPVDLKRRINVLAALFELADREFKEIRNATSDLMQQATVTQIEPADGIVEASGQAA AAATKTVNVFNFLPIAGHFFRDFPFDDQKVDDFVQDILERDGTLQKADLHRCLNENLKVVREYSEHVIAENPNRTFTAYT SIRHCLYLYNQEKFERILSRRNRERFAAWLKVNPTTQQLVNPASV >Mature_364_residues ASLDFEQEKELFRKYYDRNHKQLTAAKDAYVGIVRTLIRQSDVGEATKIEGRVKDKDECIKKFQRKYQGKLEADEQPYSI SDFISDLIGVRIVCLYEDEVPVVSELLQRHFKILNVTDKTSAVESTEDSFGYKGLHMDLTLNPDAAYPCKHLPAAEMCFE VQIRSLIQDAWSMLDHKIKYKRSIPVDLKRRINVLAALFELADREFKEIRNATSDLMQQATVTQIEPADGIVEASGQAAA AATKTVNVFNFLPIAGHFFRDFPFDDQKVDDFVQDILERDGTLQKADLHRCLNENLKVVREYSEHVIAENPNRTFTAYTS IRHCLYLYNQEKFERILSRRNRERFAAWLKVNPTTQQLVNPASV
Specific function: Unknown
COG id: COG2357
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42110; Mature: 41979
Theoretical pI: Translated: 6.43; Mature: 6.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASLDFEQEKELFRKYYDRNHKQLTAAKDAYVGIVRTLIRQSDVGEATKIEGRVKDKDEC CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCHHHH IKKFQRKYQGKLEADEQPYSISDFISDLIGVRIVCLYEDEVPVVSELLQRHFKILNVTDK HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHCCCCH TSAVESTEDSFGYKGLHMDLTLNPDAAYPCKHLPAAEMCFEVQIRSLIQDAWSMLDHKIK HHHHHCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH YKRSIPVDLKRRINVLAALFELADREFKEIRNATSDLMQQATVTQIEPADGIVEASGQAA HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHH AAATKTVNVFNFLPIAGHFFRDFPFDDQKVDDFVQDILERDGTLQKADLHRCLNENLKVV HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH REYSEHVIAENPNRTFTAYTSIRHCLYLYNQEKFERILSRRNRERFAAWLKVNPTTQQLV HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCHHHHHHHEEECCCHHHHC NPASV CCCCC >Mature Secondary Structure ASLDFEQEKELFRKYYDRNHKQLTAAKDAYVGIVRTLIRQSDVGEATKIEGRVKDKDEC CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCHHHH IKKFQRKYQGKLEADEQPYSISDFISDLIGVRIVCLYEDEVPVVSELLQRHFKILNVTDK HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHCCCCH TSAVESTEDSFGYKGLHMDLTLNPDAAYPCKHLPAAEMCFEVQIRSLIQDAWSMLDHKIK HHHHHCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH YKRSIPVDLKRRINVLAALFELADREFKEIRNATSDLMQQATVTQIEPADGIVEASGQAA HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHH AAATKTVNVFNFLPIAGHFFRDFPFDDQKVDDFVQDILERDGTLQKADLHRCLNENLKVV HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH REYSEHVIAENPNRTFTAYTSIRHCLYLYNQEKFERILSRRNRERFAAWLKVNPTTQQLV HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCHHHHHHHEEECCCHHHHC NPASV CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA