Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

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The map label for this gene is 197117760

Identifier: 197117760

GI number: 197117760

Start: 1587572

End: 1589083

Strand: Direct

Name: 197117760

Synonym: Gbem_1372

Alternate gene names: NA

Gene position: 1587572-1589083 (Clockwise)

Preceding gene: 197117759

Following gene: 197117762

Centisome position: 34.4

GC content: 65.34

Gene sequence:

>1512_bases
ATGAGACCACTGCGCACCCTTTTGGGCAGCTTCGCACTCCTTGCCCTTTCCCTGTCCGCAGGGTGCGGCAGCCCCGGCGA
GCTGCCGCGCCGGATCCAGCAGGACCTGGACACGGCCCTTCTCGGCGAAAGCCGGCAACTGCTCTACGTCGATGCCGTCA
GCCCCGCATCGACGGGCGCGGCGCTATACCCGCTGCAGCGCGGCCTCCTTGGGTGGCAACTGGCTGCGCCGCCGGTGCCG
GTGAATCTGGGTAGAAACGGGGTGGCCCCTCCCTTCGAGAAGCGTGAGGGAGACGGGCGCACCCCATCCGGCCTTTTCCC
GCTGCGCCGGGCCTTCGGCTACCAGGGGGAATTCAAGGGTCGCTTTCCGTACCAGCGGGTGGACAGCCAGGACCTCTGGG
TGGACGACGTCCATTCCCCTGATTACAACCTTTGGGTGCGGCGCGGCCAGACCATGGCCTCTTCCTACGAGGAACTTCTC
CGTCCGGATCCCCTATATAAATATGCGCTGGCGCCGGAGTACAACGAGGCGCCGGTGGTGCGGGGCCTCGGAAGTGCCAT
CTTTATCCATGTCGAGAGCAAAAGGAAGCCGGAAACCTCGGGGTGCATCTCCATGCCGGAAAAGGAGCTGGTGCAGGTGA
TGCAGTGGCTGGACCCGGAAAAGGAGCCGCAACTTTTGGTGGCGATCGCGCCCGCGCTGGAGCTGGCGAGCCAGTGGATC
GAGTCGCAACTGCCGGCCGATCTCCCGCCCGAAATGGCCCTGCGCCTCACGCAGGCCTCGCGCCTTTTGGCGCTAAAGAG
GAAGAGCGGTTTCTTTGCGGCCGCGGTGACGCTCCCCCCGCAGGTGAGCCAGCGGATGCTGGAGAAGGGTTCGTGGCGCC
CGGAGTGCCCGGTCCCCCTCGAGGAACTCTCCTACCTGGTCACTTCGTATTGGGGATTCGACGGCCGGCCGCATTACGGG
GAACTGGTGGTTCATGCCTCGCTTTGCGCCTTCGTTATGGACTCCCTGCACCACGCCTTCAACGGCCGCTTTCCCATAGA
GCGCATGGAGTTGGCCGAGGCCTTCGGCGCCGACGAGTTCCTTTCCATGGCTGCCAACAACACCTCCGCCTTCAACTGCC
GCGAGGTCCCCGGGCGTCCCGGCGTCTTCTCCACGCACAGCTATGGCGCCGCCATTGACATCAACCCACGGCAGAACCCT
TACCTGCAGGTAAACCCCGAGGCCTACCCGGTCCCTTCCGGTGACGCCGCCAGCGGCAGCTCCGGCGACACGGCTCTTGC
CGCGGCCGATTTTTGCCGCAATAACGGCTCGCTTTGCAGCATACTGCCGGCCGCTTCGGCTTCCTTCCTGGACCGGGGAG
ACCTGCGGCCGGGGATGCTGCAGGCCGACGACCCGCTCCTCTCCGCCTTCCGGCAGCGCGGCTTTTCCTGGGGCGGCGCA
TGGCGCTTCCCTGATTATCAGCACCTCGAGTACGACATCCGCAAACTCAACCTTGTTTCTGGCCGGCCCTAA

Upstream 100 bases:

>100_bases
AGCTCCAGCGGTCTCTCGACTCGGGAAAGGTTAGGTTTTCCTTGCCTTTCGGGGCGACTTCGTATAGACGAATCTACTGT
CTTTACGGGAGGAGCACCTG

Downstream 100 bases:

>100_bases
CTTTGGGCCGAAGTTCGTCGTCCCACCTCCTTTAGGCAAAACAAAAGGGCGCGCCACCTGTTAAGTGACGCGCCCTTTTT
TGTTGGAAACTGCCCGCTCT

Product: lipoprotein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 503; Mature: 503

Protein sequence:

>503_residues
MRPLRTLLGSFALLALSLSAGCGSPGELPRRIQQDLDTALLGESRQLLYVDAVSPASTGAALYPLQRGLLGWQLAAPPVP
VNLGRNGVAPPFEKREGDGRTPSGLFPLRRAFGYQGEFKGRFPYQRVDSQDLWVDDVHSPDYNLWVRRGQTMASSYEELL
RPDPLYKYALAPEYNEAPVVRGLGSAIFIHVESKRKPETSGCISMPEKELVQVMQWLDPEKEPQLLVAIAPALELASQWI
ESQLPADLPPEMALRLTQASRLLALKRKSGFFAAAVTLPPQVSQRMLEKGSWRPECPVPLEELSYLVTSYWGFDGRPHYG
ELVVHASLCAFVMDSLHHAFNGRFPIERMELAEAFGADEFLSMAANNTSAFNCREVPGRPGVFSTHSYGAAIDINPRQNP
YLQVNPEAYPVPSGDAASGSSGDTALAAADFCRNNGSLCSILPAASASFLDRGDLRPGMLQADDPLLSAFRQRGFSWGGA
WRFPDYQHLEYDIRKLNLVSGRP

Sequences:

>Translated_503_residues
MRPLRTLLGSFALLALSLSAGCGSPGELPRRIQQDLDTALLGESRQLLYVDAVSPASTGAALYPLQRGLLGWQLAAPPVP
VNLGRNGVAPPFEKREGDGRTPSGLFPLRRAFGYQGEFKGRFPYQRVDSQDLWVDDVHSPDYNLWVRRGQTMASSYEELL
RPDPLYKYALAPEYNEAPVVRGLGSAIFIHVESKRKPETSGCISMPEKELVQVMQWLDPEKEPQLLVAIAPALELASQWI
ESQLPADLPPEMALRLTQASRLLALKRKSGFFAAAVTLPPQVSQRMLEKGSWRPECPVPLEELSYLVTSYWGFDGRPHYG
ELVVHASLCAFVMDSLHHAFNGRFPIERMELAEAFGADEFLSMAANNTSAFNCREVPGRPGVFSTHSYGAAIDINPRQNP
YLQVNPEAYPVPSGDAASGSSGDTALAAADFCRNNGSLCSILPAASASFLDRGDLRPGMLQADDPLLSAFRQRGFSWGGA
WRFPDYQHLEYDIRKLNLVSGRP
>Mature_503_residues
MRPLRTLLGSFALLALSLSAGCGSPGELPRRIQQDLDTALLGESRQLLYVDAVSPASTGAALYPLQRGLLGWQLAAPPVP
VNLGRNGVAPPFEKREGDGRTPSGLFPLRRAFGYQGEFKGRFPYQRVDSQDLWVDDVHSPDYNLWVRRGQTMASSYEELL
RPDPLYKYALAPEYNEAPVVRGLGSAIFIHVESKRKPETSGCISMPEKELVQVMQWLDPEKEPQLLVAIAPALELASQWI
ESQLPADLPPEMALRLTQASRLLALKRKSGFFAAAVTLPPQVSQRMLEKGSWRPECPVPLEELSYLVTSYWGFDGRPHYG
ELVVHASLCAFVMDSLHHAFNGRFPIERMELAEAFGADEFLSMAANNTSAFNCREVPGRPGVFSTHSYGAAIDINPRQNP
YLQVNPEAYPVPSGDAASGSSGDTALAAADFCRNNGSLCSILPAASASFLDRGDLRPGMLQADDPLLSAFRQRGFSWGGA
WRFPDYQHLEYDIRKLNLVSGRP

Specific function: Unknown

COG id: COG3786

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55375; Mature: 55375

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLRTLLGSFALLALSLSAGCGSPGELPRRIQQDLDTALLGESRQLLYVDAVSPASTGA
CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
ALYPLQRGLLGWQLAAPPVPVNLGRNGVAPPFEKREGDGRTPSGLFPLRRAFGYQGEFKG
CHHHHHHCCCCCEECCCCCEEECCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCCCCCCC
RFPYQRVDSQDLWVDDVHSPDYNLWVRRGQTMASSYEELLRPDPLYKYALAPEYNEAPVV
CCCHHHCCCCCCEEECCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
RGLGSAIFIHVESKRKPETSGCISMPEKELVQVMQWLDPEKEPQLLVAIAPALELASQWI
HCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHH
ESQLPADLPPEMALRLTQASRLLALKRKSGFFAAAVTLPPQVSQRMLEKGSWRPECPVPL
HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCH
EELSYLVTSYWGFDGRPHYGELVVHASLCAFVMDSLHHAFNGRFPIERMELAEAFGADEF
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHH
LSMAANNTSAFNCREVPGRPGVFSTHSYGAAIDINPRQNPYLQVNPEAYPVPSGDAASGS
HHHHCCCCCCCEEECCCCCCCCEECCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCCCC
SGDTALAAADFCRNNGSLCSILPAASASFLDRGDLRPGMLQADDPLLSAFRQRGFSWGGA
CCCHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
WRFPDYQHLEYDIRKLNLVSGRP
CCCCCHHHHHHHHHHEEECCCCC
>Mature Secondary Structure
MRPLRTLLGSFALLALSLSAGCGSPGELPRRIQQDLDTALLGESRQLLYVDAVSPASTGA
CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
ALYPLQRGLLGWQLAAPPVPVNLGRNGVAPPFEKREGDGRTPSGLFPLRRAFGYQGEFKG
CHHHHHHCCCCCEECCCCCEEECCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCCCCCCC
RFPYQRVDSQDLWVDDVHSPDYNLWVRRGQTMASSYEELLRPDPLYKYALAPEYNEAPVV
CCCHHHCCCCCCEEECCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
RGLGSAIFIHVESKRKPETSGCISMPEKELVQVMQWLDPEKEPQLLVAIAPALELASQWI
HCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHH
ESQLPADLPPEMALRLTQASRLLALKRKSGFFAAAVTLPPQVSQRMLEKGSWRPECPVPL
HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCH
EELSYLVTSYWGFDGRPHYGELVVHASLCAFVMDSLHHAFNGRFPIERMELAEAFGADEF
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHH
LSMAANNTSAFNCREVPGRPGVFSTHSYGAAIDINPRQNPYLQVNPEAYPVPSGDAASGS
HHHHCCCCCCCEEECCCCCCCCEECCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCCCC
SGDTALAAADFCRNNGSLCSILPAASASFLDRGDLRPGMLQADDPLLSAFRQRGFSWGGA
CCCHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
WRFPDYQHLEYDIRKLNLVSGRP
CCCCCHHHHHHHHHHEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA