| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117760
Identifier: 197117760
GI number: 197117760
Start: 1587572
End: 1589083
Strand: Direct
Name: 197117760
Synonym: Gbem_1372
Alternate gene names: NA
Gene position: 1587572-1589083 (Clockwise)
Preceding gene: 197117759
Following gene: 197117762
Centisome position: 34.4
GC content: 65.34
Gene sequence:
>1512_bases ATGAGACCACTGCGCACCCTTTTGGGCAGCTTCGCACTCCTTGCCCTTTCCCTGTCCGCAGGGTGCGGCAGCCCCGGCGA GCTGCCGCGCCGGATCCAGCAGGACCTGGACACGGCCCTTCTCGGCGAAAGCCGGCAACTGCTCTACGTCGATGCCGTCA GCCCCGCATCGACGGGCGCGGCGCTATACCCGCTGCAGCGCGGCCTCCTTGGGTGGCAACTGGCTGCGCCGCCGGTGCCG GTGAATCTGGGTAGAAACGGGGTGGCCCCTCCCTTCGAGAAGCGTGAGGGAGACGGGCGCACCCCATCCGGCCTTTTCCC GCTGCGCCGGGCCTTCGGCTACCAGGGGGAATTCAAGGGTCGCTTTCCGTACCAGCGGGTGGACAGCCAGGACCTCTGGG TGGACGACGTCCATTCCCCTGATTACAACCTTTGGGTGCGGCGCGGCCAGACCATGGCCTCTTCCTACGAGGAACTTCTC CGTCCGGATCCCCTATATAAATATGCGCTGGCGCCGGAGTACAACGAGGCGCCGGTGGTGCGGGGCCTCGGAAGTGCCAT CTTTATCCATGTCGAGAGCAAAAGGAAGCCGGAAACCTCGGGGTGCATCTCCATGCCGGAAAAGGAGCTGGTGCAGGTGA TGCAGTGGCTGGACCCGGAAAAGGAGCCGCAACTTTTGGTGGCGATCGCGCCCGCGCTGGAGCTGGCGAGCCAGTGGATC GAGTCGCAACTGCCGGCCGATCTCCCGCCCGAAATGGCCCTGCGCCTCACGCAGGCCTCGCGCCTTTTGGCGCTAAAGAG GAAGAGCGGTTTCTTTGCGGCCGCGGTGACGCTCCCCCCGCAGGTGAGCCAGCGGATGCTGGAGAAGGGTTCGTGGCGCC CGGAGTGCCCGGTCCCCCTCGAGGAACTCTCCTACCTGGTCACTTCGTATTGGGGATTCGACGGCCGGCCGCATTACGGG GAACTGGTGGTTCATGCCTCGCTTTGCGCCTTCGTTATGGACTCCCTGCACCACGCCTTCAACGGCCGCTTTCCCATAGA GCGCATGGAGTTGGCCGAGGCCTTCGGCGCCGACGAGTTCCTTTCCATGGCTGCCAACAACACCTCCGCCTTCAACTGCC GCGAGGTCCCCGGGCGTCCCGGCGTCTTCTCCACGCACAGCTATGGCGCCGCCATTGACATCAACCCACGGCAGAACCCT TACCTGCAGGTAAACCCCGAGGCCTACCCGGTCCCTTCCGGTGACGCCGCCAGCGGCAGCTCCGGCGACACGGCTCTTGC CGCGGCCGATTTTTGCCGCAATAACGGCTCGCTTTGCAGCATACTGCCGGCCGCTTCGGCTTCCTTCCTGGACCGGGGAG ACCTGCGGCCGGGGATGCTGCAGGCCGACGACCCGCTCCTCTCCGCCTTCCGGCAGCGCGGCTTTTCCTGGGGCGGCGCA TGGCGCTTCCCTGATTATCAGCACCTCGAGTACGACATCCGCAAACTCAACCTTGTTTCTGGCCGGCCCTAA
Upstream 100 bases:
>100_bases AGCTCCAGCGGTCTCTCGACTCGGGAAAGGTTAGGTTTTCCTTGCCTTTCGGGGCGACTTCGTATAGACGAATCTACTGT CTTTACGGGAGGAGCACCTG
Downstream 100 bases:
>100_bases CTTTGGGCCGAAGTTCGTCGTCCCACCTCCTTTAGGCAAAACAAAAGGGCGCGCCACCTGTTAAGTGACGCGCCCTTTTT TGTTGGAAACTGCCCGCTCT
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 503; Mature: 503
Protein sequence:
>503_residues MRPLRTLLGSFALLALSLSAGCGSPGELPRRIQQDLDTALLGESRQLLYVDAVSPASTGAALYPLQRGLLGWQLAAPPVP VNLGRNGVAPPFEKREGDGRTPSGLFPLRRAFGYQGEFKGRFPYQRVDSQDLWVDDVHSPDYNLWVRRGQTMASSYEELL RPDPLYKYALAPEYNEAPVVRGLGSAIFIHVESKRKPETSGCISMPEKELVQVMQWLDPEKEPQLLVAIAPALELASQWI ESQLPADLPPEMALRLTQASRLLALKRKSGFFAAAVTLPPQVSQRMLEKGSWRPECPVPLEELSYLVTSYWGFDGRPHYG ELVVHASLCAFVMDSLHHAFNGRFPIERMELAEAFGADEFLSMAANNTSAFNCREVPGRPGVFSTHSYGAAIDINPRQNP YLQVNPEAYPVPSGDAASGSSGDTALAAADFCRNNGSLCSILPAASASFLDRGDLRPGMLQADDPLLSAFRQRGFSWGGA WRFPDYQHLEYDIRKLNLVSGRP
Sequences:
>Translated_503_residues MRPLRTLLGSFALLALSLSAGCGSPGELPRRIQQDLDTALLGESRQLLYVDAVSPASTGAALYPLQRGLLGWQLAAPPVP VNLGRNGVAPPFEKREGDGRTPSGLFPLRRAFGYQGEFKGRFPYQRVDSQDLWVDDVHSPDYNLWVRRGQTMASSYEELL RPDPLYKYALAPEYNEAPVVRGLGSAIFIHVESKRKPETSGCISMPEKELVQVMQWLDPEKEPQLLVAIAPALELASQWI ESQLPADLPPEMALRLTQASRLLALKRKSGFFAAAVTLPPQVSQRMLEKGSWRPECPVPLEELSYLVTSYWGFDGRPHYG ELVVHASLCAFVMDSLHHAFNGRFPIERMELAEAFGADEFLSMAANNTSAFNCREVPGRPGVFSTHSYGAAIDINPRQNP YLQVNPEAYPVPSGDAASGSSGDTALAAADFCRNNGSLCSILPAASASFLDRGDLRPGMLQADDPLLSAFRQRGFSWGGA WRFPDYQHLEYDIRKLNLVSGRP >Mature_503_residues MRPLRTLLGSFALLALSLSAGCGSPGELPRRIQQDLDTALLGESRQLLYVDAVSPASTGAALYPLQRGLLGWQLAAPPVP VNLGRNGVAPPFEKREGDGRTPSGLFPLRRAFGYQGEFKGRFPYQRVDSQDLWVDDVHSPDYNLWVRRGQTMASSYEELL RPDPLYKYALAPEYNEAPVVRGLGSAIFIHVESKRKPETSGCISMPEKELVQVMQWLDPEKEPQLLVAIAPALELASQWI ESQLPADLPPEMALRLTQASRLLALKRKSGFFAAAVTLPPQVSQRMLEKGSWRPECPVPLEELSYLVTSYWGFDGRPHYG ELVVHASLCAFVMDSLHHAFNGRFPIERMELAEAFGADEFLSMAANNTSAFNCREVPGRPGVFSTHSYGAAIDINPRQNP YLQVNPEAYPVPSGDAASGSSGDTALAAADFCRNNGSLCSILPAASASFLDRGDLRPGMLQADDPLLSAFRQRGFSWGGA WRFPDYQHLEYDIRKLNLVSGRP
Specific function: Unknown
COG id: COG3786
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55375; Mature: 55375
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPLRTLLGSFALLALSLSAGCGSPGELPRRIQQDLDTALLGESRQLLYVDAVSPASTGA CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC ALYPLQRGLLGWQLAAPPVPVNLGRNGVAPPFEKREGDGRTPSGLFPLRRAFGYQGEFKG CHHHHHHCCCCCEECCCCCEEECCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCCCCCCC RFPYQRVDSQDLWVDDVHSPDYNLWVRRGQTMASSYEELLRPDPLYKYALAPEYNEAPVV CCCHHHCCCCCCEEECCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHH RGLGSAIFIHVESKRKPETSGCISMPEKELVQVMQWLDPEKEPQLLVAIAPALELASQWI HCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHH ESQLPADLPPEMALRLTQASRLLALKRKSGFFAAAVTLPPQVSQRMLEKGSWRPECPVPL HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCH EELSYLVTSYWGFDGRPHYGELVVHASLCAFVMDSLHHAFNGRFPIERMELAEAFGADEF HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHH LSMAANNTSAFNCREVPGRPGVFSTHSYGAAIDINPRQNPYLQVNPEAYPVPSGDAASGS HHHHCCCCCCCEEECCCCCCCCEECCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCCCC SGDTALAAADFCRNNGSLCSILPAASASFLDRGDLRPGMLQADDPLLSAFRQRGFSWGGA CCCHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCC WRFPDYQHLEYDIRKLNLVSGRP CCCCCHHHHHHHHHHEEECCCCC >Mature Secondary Structure MRPLRTLLGSFALLALSLSAGCGSPGELPRRIQQDLDTALLGESRQLLYVDAVSPASTGA CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC ALYPLQRGLLGWQLAAPPVPVNLGRNGVAPPFEKREGDGRTPSGLFPLRRAFGYQGEFKG CHHHHHHCCCCCEECCCCCEEECCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCCCCCCC RFPYQRVDSQDLWVDDVHSPDYNLWVRRGQTMASSYEELLRPDPLYKYALAPEYNEAPVV CCCHHHCCCCCCEEECCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHH RGLGSAIFIHVESKRKPETSGCISMPEKELVQVMQWLDPEKEPQLLVAIAPALELASQWI HCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHH ESQLPADLPPEMALRLTQASRLLALKRKSGFFAAAVTLPPQVSQRMLEKGSWRPECPVPL HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCH EELSYLVTSYWGFDGRPHYGELVVHASLCAFVMDSLHHAFNGRFPIERMELAEAFGADEF HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHH LSMAANNTSAFNCREVPGRPGVFSTHSYGAAIDINPRQNPYLQVNPEAYPVPSGDAASGS HHHHCCCCCCCEEECCCCCCCCEECCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCCCC SGDTALAAADFCRNNGSLCSILPAASASFLDRGDLRPGMLQADDPLLSAFRQRGFSWGGA CCCHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCC WRFPDYQHLEYDIRKLNLVSGRP CCCCCHHHHHHHHHHEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA