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The map label for this gene is pepF2 [H]

Identifier: 197117683

GI number: 197117683

Start: 1495993

End: 1497759

Strand: Reverse

Name: pepF2 [H]

Synonym: Gbem_1295

Alternate gene names: 197117683

Gene position: 1497759-1495993 (Counterclockwise)

Preceding gene: 197117685

Following gene: 197117642

Centisome position: 32.45

GC content: 62.08

Gene sequence:

>1767_bases
ATGCAAAGCGACCTCAATTGGGATACGACCCCGCTCTACCCCGCCCCTTCCGCACCGGAACTTGCCCGCGCCTTCGAAGA
AGGGACCGGCCAGGTGGCCGCCTTTCGCGAGCGCTACCGCGGAAAGGTGGCGGAGCTCGACGCAGAGGGGCTCCTGGAAG
CGCTGAAGCAATACGAGTCCCTGCAGGAGAAGCTGGCGACGCCTCAGCTCTACGCCCACCTTCTCTTCGCCGCGGACAGC
GAGAGCGACGAGCACAAGCGGCTGTCGCAGAAAGCCGAAGAGTTCGGCAACGCCATGGGGAGGGAGCTGATCTTCTTCGA
CCTGGAACTGATCCAGATGGAGGAGGAGCCCTTCGCGAAGCTTGCGGACGACCTGCTGCTGGAAAACTACCGCCACTACC
TGCAGGTTTTGCGCAAGTTCAAGAAGCACACCCTGACCGAGCGGGAAGAAAGCCTTCTAGCGCAAAAGAGCCTGACCGGG
GTGCAGGCGTTTTGCCGCCTCTTCGACGAGGTCTCCGCCTCGCTGCGCTACACCCTGGAGATGGAGGGAGAGACGCGGGA
GATGACCGGCGAGGAGCTCCTGGCGCTCTTGCACCACCCGGACACAGGGCTTAGGGAAAGGGCCTTCGGCACCTTCCTCA
AACGCCACGAGGAAAACGGCATCATGTTTTCCGCCGTCTTCAACAACGTCGCCTTGGACCACTCCCAGGAGCTTGAGCTT
AGAAACTACAGCCATCCCATGGAGCCTACGAACCTCGGTAACGAGATCCCCAACGAGGTGGTAGAAAGCCTGATGCGGGT
CTCCGAGGAGAACTACCCGCTGGCGCAGGAGTATTTCCGTCTCAAGGCGCAGCTTCTGGGCATCCCGCGCCTGAAGAACA
CCGACGTCTACGCCCCCATCTCCGAGAGCGACCGCAAGTACAGCTTCGAGGAGGCGCGCGCCATGACGGTCGCTGCTTAC
CGCGGCTTCTCCGACGAGTTCGCAGAACTCGCCGATTCCTTCTTCACCGGCAAGAGGGTCGACGTCCTCCCTCGCCCCGG
CAAGAGCGGAGGCGCCTTCTGCATGGGGATGATCCCGTCGCTCCCCCCGTACCTGCTTTTGAACTTCACCGGAAACCTGC
GCGATGTATCCACCATGGCGCACGAGGTGGGGCACGGCATCCACTACCTTTTGGCGCAGCGCCAGAGCATGCTCAACTAC
CATCCCCCGCTGCCGCTGGCCGAGACGGCCTCGGTCTTCGGGGAGATGCTGTTGACCCGTCAGCTCCTGGAGCAGGAAAC
CGACGTGGAGGTGAAGAAATCGCTTCTCTGCGCGAAGATCGAGGACATCATCGCCACCACCTTCCGCCAGAACGTCCTCA
CCAGTTTCGAGGAACGGATGCACCTGGAGCGGGCGAATGGGCTTCTGACCGCCAGCGAGCTCTGCGACATGTGGTGGCAG
GAGAACGCGAAGCTCTACGGCGACGCCGTCGAGATGATAGAGCCGTACCGCTACGGCTGGAGCTACATCTCCCACTTCAT
TCACGCCCGTTTCTATTGCTACTCCTACACCTGCGCCGAGTTGGTGGTGCTCTCCTTGTTCCAGCGCTACCTGAAGGAGC
GCGAGAGCTTCGTGCCGGTCTACCGCGACATCCTCGCCGACGGCGGTTCCAAGTCCCCCGGCGACACCCTCGCCCCTGGA
GGGATCGTCTTCAGCGACCCGAGTTTCTGGCAGGGAGGGTACGATCTGCTGGGCGACCTGATCAAGGAACTGAAGGCGCT
GCTGTAA

Upstream 100 bases:

>100_bases
CGCGGCCCTGCCCTTTCTTGACACTGCTTAGCCCATGCATTACTATCGGTTGCATTTCCATGAAATCATTGACGATTCAC
CATGCATCAAGGGAGAAACC

Downstream 100 bases:

>100_bases
CTCGTCCGACAGGTCAGACAGGTCAGACCCGTCCGACAGGTCCGACTGGTCAGACTGGTCAGACTGGTCAGACAAAAACT
AAAAAGGCCCGCCGGTTATC

Product: oligoendopeptidase, pepF/M3 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 588; Mature: 588

Protein sequence:

>588_residues
MQSDLNWDTTPLYPAPSAPELARAFEEGTGQVAAFRERYRGKVAELDAEGLLEALKQYESLQEKLATPQLYAHLLFAADS
ESDEHKRLSQKAEEFGNAMGRELIFFDLELIQMEEEPFAKLADDLLLENYRHYLQVLRKFKKHTLTEREESLLAQKSLTG
VQAFCRLFDEVSASLRYTLEMEGETREMTGEELLALLHHPDTGLRERAFGTFLKRHEENGIMFSAVFNNVALDHSQELEL
RNYSHPMEPTNLGNEIPNEVVESLMRVSEENYPLAQEYFRLKAQLLGIPRLKNTDVYAPISESDRKYSFEEARAMTVAAY
RGFSDEFAELADSFFTGKRVDVLPRPGKSGGAFCMGMIPSLPPYLLLNFTGNLRDVSTMAHEVGHGIHYLLAQRQSMLNY
HPPLPLAETASVFGEMLLTRQLLEQETDVEVKKSLLCAKIEDIIATTFRQNVLTSFEERMHLERANGLLTASELCDMWWQ
ENAKLYGDAVEMIEPYRYGWSYISHFIHARFYCYSYTCAELVVLSLFQRYLKERESFVPVYRDILADGGSKSPGDTLAPG
GIVFSDPSFWQGGYDLLGDLIKELKALL

Sequences:

>Translated_588_residues
MQSDLNWDTTPLYPAPSAPELARAFEEGTGQVAAFRERYRGKVAELDAEGLLEALKQYESLQEKLATPQLYAHLLFAADS
ESDEHKRLSQKAEEFGNAMGRELIFFDLELIQMEEEPFAKLADDLLLENYRHYLQVLRKFKKHTLTEREESLLAQKSLTG
VQAFCRLFDEVSASLRYTLEMEGETREMTGEELLALLHHPDTGLRERAFGTFLKRHEENGIMFSAVFNNVALDHSQELEL
RNYSHPMEPTNLGNEIPNEVVESLMRVSEENYPLAQEYFRLKAQLLGIPRLKNTDVYAPISESDRKYSFEEARAMTVAAY
RGFSDEFAELADSFFTGKRVDVLPRPGKSGGAFCMGMIPSLPPYLLLNFTGNLRDVSTMAHEVGHGIHYLLAQRQSMLNY
HPPLPLAETASVFGEMLLTRQLLEQETDVEVKKSLLCAKIEDIIATTFRQNVLTSFEERMHLERANGLLTASELCDMWWQ
ENAKLYGDAVEMIEPYRYGWSYISHFIHARFYCYSYTCAELVVLSLFQRYLKERESFVPVYRDILADGGSKSPGDTLAPG
GIVFSDPSFWQGGYDLLGDLIKELKALL
>Mature_588_residues
MQSDLNWDTTPLYPAPSAPELARAFEEGTGQVAAFRERYRGKVAELDAEGLLEALKQYESLQEKLATPQLYAHLLFAADS
ESDEHKRLSQKAEEFGNAMGRELIFFDLELIQMEEEPFAKLADDLLLENYRHYLQVLRKFKKHTLTEREESLLAQKSLTG
VQAFCRLFDEVSASLRYTLEMEGETREMTGEELLALLHHPDTGLRERAFGTFLKRHEENGIMFSAVFNNVALDHSQELEL
RNYSHPMEPTNLGNEIPNEVVESLMRVSEENYPLAQEYFRLKAQLLGIPRLKNTDVYAPISESDRKYSFEEARAMTVAAY
RGFSDEFAELADSFFTGKRVDVLPRPGKSGGAFCMGMIPSLPPYLLLNFTGNLRDVSTMAHEVGHGIHYLLAQRQSMLNY
HPPLPLAETASVFGEMLLTRQLLEQETDVEVKKSLLCAKIEDIIATTFRQNVLTSFEERMHLERANGLLTASELCDMWWQ
ENAKLYGDAVEMIEPYRYGWSYISHFIHARFYCYSYTCAELVVLSLFQRYLKERESFVPVYRDILADGGSKSPGDTLAPG
GIVFSDPSFWQGGYDLLGDLIKELKALL

Specific function: Hydrolyzes peptides containing between 7 and 17 amino acids with a rather wide specificity [H]

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647 [H]

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]

EC number: NA

Molecular weight: Translated: 67080; Mature: 67080

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSDLNWDTTPLYPAPSAPELARAFEEGTGQVAAFRERYRGKVAELDAEGLLEALKQYES
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHCCHHHHHHHHHHHHH
LQEKLATPQLYAHLLFAADSESDEHKRLSQKAEEFGNAMGRELIFFDLELIQMEEEPFAK
HHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHEEHHHHHHCCCCHHHH
LADDLLLENYRHYLQVLRKFKKHTLTEREESLLAQKSLTGVQAFCRLFDEVSASLRYTLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
MEGETREMTGEELLALLHHPDTGLRERAFGTFLKRHEENGIMFSAVFNNVALDHSQELEL
ECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCHHH
RNYSHPMEPTNLGNEIPNEVVESLMRVSEENYPLAQEYFRLKAQLLGIPRLKNTDVYAPI
HCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
SESDRKYSFEEARAMTVAAYRGFSDEFAELADSFFTGKRVDVLPRPGKSGGAFCMGMIPS
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCC
LPPYLLLNFTGNLRDVSTMAHEVGHGIHYLLAQRQSMLNYHPPLPLAETASVFGEMLLTR
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
QLLEQETDVEVKKSLLCAKIEDIIATTFRQNVLTSFEERMHLERANGLLTASELCDMWWQ
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHH
ENAKLYGDAVEMIEPYRYGWSYISHFIHARFYCYSYTCAELVVLSLFQRYLKERESFVPV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRDILADGGSKSPGDTLAPGGIVFSDPSFWQGGYDLLGDLIKELKALL
HHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHC
>Mature Secondary Structure
MQSDLNWDTTPLYPAPSAPELARAFEEGTGQVAAFRERYRGKVAELDAEGLLEALKQYES
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHCCHHHHHHHHHHHHH
LQEKLATPQLYAHLLFAADSESDEHKRLSQKAEEFGNAMGRELIFFDLELIQMEEEPFAK
HHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHEEHHHHHHCCCCHHHH
LADDLLLENYRHYLQVLRKFKKHTLTEREESLLAQKSLTGVQAFCRLFDEVSASLRYTLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
MEGETREMTGEELLALLHHPDTGLRERAFGTFLKRHEENGIMFSAVFNNVALDHSQELEL
ECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCHHH
RNYSHPMEPTNLGNEIPNEVVESLMRVSEENYPLAQEYFRLKAQLLGIPRLKNTDVYAPI
HCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
SESDRKYSFEEARAMTVAAYRGFSDEFAELADSFFTGKRVDVLPRPGKSGGAFCMGMIPS
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCC
LPPYLLLNFTGNLRDVSTMAHEVGHGIHYLLAQRQSMLNYHPPLPLAETASVFGEMLLTR
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
QLLEQETDVEVKKSLLCAKIEDIIATTFRQNVLTSFEERMHLERANGLLTASELCDMWWQ
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHH
ENAKLYGDAVEMIEPYRYGWSYISHFIHARFYCYSYTCAELVVLSLFQRYLKERESFVPV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRDILADGGSKSPGDTLAPGGIVFSDPSFWQGGYDLLGDLIKELKALL
HHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9209029 [H]