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The map label for this gene is scdA [H]

Identifier: 197117639

GI number: 197117639

Start: 1447269

End: 1448000

Strand: Reverse

Name: scdA [H]

Synonym: Gbem_1251

Alternate gene names: 197117639

Gene position: 1448000-1447269 (Counterclockwise)

Preceding gene: 197117640

Following gene: 197117637

Centisome position: 31.37

GC content: 59.15

Gene sequence:

>732_bases
ATGGAGAAAACAGCAAAGATTCCTGTCGAAGCAACCGATTCGGAAACCGTTGGCGCCGTCGTGGCCAGGGATTACCGCGC
CGCCGGCGTGTTGGAAAAATATGGTATCGACTTCTGCTGCGGAGGGAACGTCCCTCTGGACGCGGCCTGCCGCGACAAAG
GGGTAGATCCGCAGGCCGTGCGGCGCGAACTGGAGGAGGCGGCGGCCCGCCCCCTGGATCGCAGCCAGAATTACGACGCG
TGGGAACTCCCGTTTCTGGCTGACTACATCGTCAACACGCACCATGTCTACCTGAAGGAAAGCATCCCGACCATTGCGGC
CTACTCTCAGAAGATCGCCGAAGTGCATGGCGCCAACCATCCCGAAGCGGTGGAGATCGCCGCCATTTTCCGCAAGGTGG
GGGAGGACATGATGCTCCACCTGCAAAAGGAGGAGGAAAAACTCTTCCCGGCGATCAAGCGGCTTGCAGAGCTGAAGGCA
AAAGGAACCAGCGCCGATGCGCAGGAAGTAGCCGGCCTGAAGGAAGTCCTGGCAGACCTGAGCCACGAGCATGACGAGGT
AGGAGCCGCGGTGCACGAGATACGGCGGCTCGCCAACGACTACACCGTACCCGGGGACGTCTGCAATACCTTCATGGTGA
CCTATGAGAAACTGAAGGAATTCGAAGACGACCTGCACAAGCACGTTCATTTGGAGAACAACATCCTCTTCCCCAAGGCG
GCAAGGGTGTAA

Upstream 100 bases:

>100_bases
TTTTCTTGATCTGGATCATACATTCTTAACCCTGTCGGTGTTACTATCAGAGCTGCAAGATGAAGCGCACCTATTTCCGG
ATGTGCAAAGGAGACCGACC

Downstream 100 bases:

>100_bases
GTCAAGATGAAGCTCCACTTGCCCGCATCTCCAGGCCCGTAAAGGTCCCCCCTCCCCTTGCGGGTGTATGGACCGGGGTC
AAGGTTTACAGTTGTTCGGG

Product: iron-sulfur cluster repair protein ScdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MEKTAKIPVEATDSETVGAVVARDYRAAGVLEKYGIDFCCGGNVPLDAACRDKGVDPQAVRRELEEAAARPLDRSQNYDA
WELPFLADYIVNTHHVYLKESIPTIAAYSQKIAEVHGANHPEAVEIAAIFRKVGEDMMLHLQKEEEKLFPAIKRLAELKA
KGTSADAQEVAGLKEVLADLSHEHDEVGAAVHEIRRLANDYTVPGDVCNTFMVTYEKLKEFEDDLHKHVHLENNILFPKA
ARV

Sequences:

>Translated_243_residues
MEKTAKIPVEATDSETVGAVVARDYRAAGVLEKYGIDFCCGGNVPLDAACRDKGVDPQAVRRELEEAAARPLDRSQNYDA
WELPFLADYIVNTHHVYLKESIPTIAAYSQKIAEVHGANHPEAVEIAAIFRKVGEDMMLHLQKEEEKLFPAIKRLAELKA
KGTSADAQEVAGLKEVLADLSHEHDEVGAAVHEIRRLANDYTVPGDVCNTFMVTYEKLKEFEDDLHKHVHLENNILFPKA
ARV
>Mature_243_residues
MEKTAKIPVEATDSETVGAVVARDYRAAGVLEKYGIDFCCGGNVPLDAACRDKGVDPQAVRRELEEAAARPLDRSQNYDA
WELPFLADYIVNTHHVYLKESIPTIAAYSQKIAEVHGANHPEAVEIAAIFRKVGEDMMLHLQKEEEKLFPAIKRLAELKA
KGTSADAQEVAGLKEVLADLSHEHDEVGAAVHEIRRLANDYTVPGDVCNTFMVTYEKLKEFEDDLHKHVHLENNILFPKA
ARV

Specific function: Involved in peptidoglycan cross-linking. Required for normal cell growth and development [H]

COG id: COG2846

COG function: function code D; Regulator of cell morphogenesis and NO signaling

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scdA family [H]

Homologues:

Organism=Escherichia coli, GI1790654, Length=226, Percent_Identity=28.3185840707965, Blast_Score=111, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007500
- InterPro:   IPR019903
- InterPro:   IPR012312 [H]

Pfam domain/function: PF01814 Hemerythrin; PF04405 ScdA_N [H]

EC number: NA

Molecular weight: Translated: 27029; Mature: 27029

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKTAKIPVEATDSETVGAVVARDYRAAGVLEKYGIDFCCGGNVPLDAACRDKGVDPQAV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHCCCCCHHHH
RRELEEAAARPLDRSQNYDAWELPFLADYIVNTHHVYLKESIPTIAAYSQKIAEVHGANH
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHEEEHHCCCHHHHHHHHHHHHHCCCC
PEAVEIAAIFRKVGEDMMLHLQKEEEKLFPAIKRLAELKAKGTSADAQEVAGLKEVLADL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
SHEHDEVGAAVHEIRRLANDYTVPGDVCNTFMVTYEKLKEFEDDLHKHVHLENNILFPKA
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHH
ARV
CCC
>Mature Secondary Structure
MEKTAKIPVEATDSETVGAVVARDYRAAGVLEKYGIDFCCGGNVPLDAACRDKGVDPQAV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHCCCCCHHHH
RRELEEAAARPLDRSQNYDAWELPFLADYIVNTHHVYLKESIPTIAAYSQKIAEVHGANH
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHEEEHHCCCHHHHHHHHHHHHHCCCC
PEAVEIAAIFRKVGEDMMLHLQKEEEKLFPAIKRLAELKAKGTSADAQEVAGLKEVLADL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
SHEHDEVGAAVHEIRRLANDYTVPGDVCNTFMVTYEKLKEFEDDLHKHVHLENNILFPKA
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHH
ARV
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA