Click here to switch to the map view.

The map label for this gene is 197117604

Identifier: 197117604

GI number: 197117604

Start: 1408331

End: 1408948

Strand: Direct

Name: 197117604

Synonym: Gbem_1216

Alternate gene names: NA

Gene position: 1408331-1408948 (Clockwise)

Preceding gene: 197117603

Following gene: 197117605

Centisome position: 30.52

GC content: 64.24

Gene sequence:

>618_bases
ATGAAAACTCTGCTGAGGATCTGGATCTTGTTGCTGTTGTCGGCGACGGCCGCGCAGGCCTCGCGCGGGGAGATGGCTCG
CGAGTTCCTGGCCGAGACCAACGTCGCCCGCACCGACCCCGCCCGCTATGCCGGCTACCTCAAGGAGATGAGGGGGAACT
TCATCGGGAAGGGGTACCGGCTCCCGGGTTCGATGAACCTGGTAATGACCAACGAAGGGGTGGCCGCCGTCGAAGAGGCG
ATAGCCTTTCTGTCCAGGCAGCGTCCCGTGTCCGCGCTTTCCTGGTCTCCCGGGCTGGCTAAGGCGGCCGGTGAACTGGT
CCGGGAACAGGCGGCCTCCGGCACAACGGGGCATGACGGCGCAAGCGGCGACCTGAAACAGCGCATCGAGCGCTTCGGCA
CCTGGCAGGGGAGCATCGCCGAGAACATCGGCTACGGTCCCGATACGGCGCGCCGGATGGTGATGGAGCTGATCATAGAC
GACGGCGTATCCGGCCGCGGACACAGAAAGAACATCTTCGAGCGTTCCTTCGGCACGGCGGGCGCCGCCTGCGGATCGCA
TCCTTTGTACCGGAACATGTGCGTCATGGACTTCGCCGTCGGATACAAGAACAAGTAG

Upstream 100 bases:

>100_bases
ACCTCTACTTCACCGTGTACGGGGACGATATCGAGGCGACGCTGGCCGACGCCATGAAGGTGTTCGAAACGAGGCTGGCT
ATGCTTGAGGGGAAAAAATC

Downstream 100 bases:

>100_bases
CTCTTGGGATGAATGCCCCTTCATTTCCAAGCAGTAATTGCTTGACACTCCCGTCCCAAATACCTATAGACTAATGGCTC
GTTTTTCCACCCGAATCCTT

Product: SCP-like extracellular protein

Products: NA

Alternate protein names: Allergen V5/Tpx-1 Family Protein; SCP-Like Extracellular Protein; Allergen V5/Tpx-1 Related Protein; Allergen V5/Tpx-1 ; Lipoprotein

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MKTLLRIWILLLLSATAAQASRGEMAREFLAETNVARTDPARYAGYLKEMRGNFIGKGYRLPGSMNLVMTNEGVAAVEEA
IAFLSRQRPVSALSWSPGLAKAAGELVREQAASGTTGHDGASGDLKQRIERFGTWQGSIAENIGYGPDTARRMVMELIID
DGVSGRGHRKNIFERSFGTAGAACGSHPLYRNMCVMDFAVGYKNK

Sequences:

>Translated_205_residues
MKTLLRIWILLLLSATAAQASRGEMAREFLAETNVARTDPARYAGYLKEMRGNFIGKGYRLPGSMNLVMTNEGVAAVEEA
IAFLSRQRPVSALSWSPGLAKAAGELVREQAASGTTGHDGASGDLKQRIERFGTWQGSIAENIGYGPDTARRMVMELIID
DGVSGRGHRKNIFERSFGTAGAACGSHPLYRNMCVMDFAVGYKNK
>Mature_205_residues
MKTLLRIWILLLLSATAAQASRGEMAREFLAETNVARTDPARYAGYLKEMRGNFIGKGYRLPGSMNLVMTNEGVAAVEEA
IAFLSRQRPVSALSWSPGLAKAAGELVREQAASGTTGHDGASGDLKQRIERFGTWQGSIAENIGYGPDTARRMVMELIID
DGVSGRGHRKNIFERSFGTAGAACGSHPLYRNMCVMDFAVGYKNK

Specific function: Unknown

COG id: COG2340

COG function: function code S; Uncharacterized protein with SCP/PR1 domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22249; Mature: 22249

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLLRIWILLLLSATAAQASRGEMAREFLAETNVARTDPARYAGYLKEMRGNFIGKGYR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEE
LPGSMNLVMTNEGVAAVEEAIAFLSRQRPVSALSWSPGLAKAAGELVREQAASGTTGHDG
CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHCCCCCCCCC
ASGDLKQRIERFGTWQGSIAENIGYGPDTARRMVMELIIDDGVSGRGHRKNIFERSFGTA
CCCHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
GAACGSHPLYRNMCVMDFAVGYKNK
CCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKTLLRIWILLLLSATAAQASRGEMAREFLAETNVARTDPARYAGYLKEMRGNFIGKGYR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEE
LPGSMNLVMTNEGVAAVEEAIAFLSRQRPVSALSWSPGLAKAAGELVREQAASGTTGHDG
CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHCCCCCCCCC
ASGDLKQRIERFGTWQGSIAENIGYGPDTARRMVMELIIDDGVSGRGHRKNIFERSFGTA
CCCHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
GAACGSHPLYRNMCVMDFAVGYKNK
CCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA