| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117584
Identifier: 197117584
GI number: 197117584
Start: 1389073
End: 1390326
Strand: Reverse
Name: 197117584
Synonym: Gbem_1196
Alternate gene names: NA
Gene position: 1390326-1389073 (Counterclockwise)
Preceding gene: 197117585
Following gene: 308535223
Centisome position: 30.13
GC content: 55.98
Gene sequence:
>1254_bases ATGCTGGCCTCTGTGTGCGCCTCCGCTGCAGCACCACCCTCGTCCATCAACCTTACCGTTGAAACAACCGCGGCGGATCT CGCCACCATAATCAACCAGTCTCTTCCCAAGGAACTCTACAAGGGACAGGGGGGACTGGGGACATCAGTCTCTGTAGTTC GCACCGGCCCGATGGTAGTGAACGCGGCGGACAATTACCTCTACCTGACCTTGCCTGTTCAACTGACATTCAAGTACGTC ATGTACGAGAGCTACCCGCTCAAGGCCGGACTCAAATTCAAGGTAAAAGTCAACGTCACTCCGGACTGGCGCCTCAAGAC AGAGTTTTATTACATGGGCCTGTCTGACAATCTGGCCGATGACTTCAAGGTAGGACCGCTGTCGCTCAAGCCCAAAAGCA TGGTCGACAACATCAGCCAACCGGTCCAAAAGCTTCTCGCGCCTGTAATAGACGCCAAGGTAAACGATGCCGTCCAACTG AAACCAAAGGTCGCTCGACTCTGGCAGAATGCCTTTTCCCCGACCCTCGTCAGCAAAGAATTCAGCGCATGGCTAAAGCT GGCACCGGAAAGGATCGTCATGAGTCCGCTTTCGGCTGCGAACAACCAGGTCCGGCTTAGCATTGGCATAGTTACCGGCG CTGAGATAGTTGTCGGGCCGAAACCCACCCCTGCTCCTGTGAAAGCGCTGCCCCAGGTGCAGCAGTTACAGGCATTCGAC AAGGCGTTCCGCATTCAGCTTGGCACCGACATATTCTACGCCGACCTGGTCGAAGCCCTGAAGCCGGTGCTGCTGGAAAA GACCTTCGGCGAAGACAAGAAGATCACGGTGAAGGGTTTCAACCTAAAGGGTGAGGATGGTCGACTGATTGTCATACTGA ACGCGACCGGAGACTTCAACGGCGAATTAACCCTTCTGGCGAAGCCGGTGTACAACCCGCAGAACAACTCTCTGACCTTT GAAGACGTAGATTTCGACACCAAGGGGGCGGGAGTGCTGATTGGTGCCGGCAGTTGGCTCTTCAGCAGCACCATCAAAAA GACCATAAAGACGAAACTCGACGGCTCCGTCAGCGAGCAGTTGGAGAAGGCTCGGGGCAAAGCATCCTCGGCATTGGCGT CGGTGCAGATCGCCGAGCACGTGAGGCTTACCGGAGCCGTCAAGTCCTTGGGACTTGGCGAGCCAGCCGTCTTGAGCGAC CGCTTATCGCTTCAGGTCGTGGCACTAGGCGAGTCCAGCGTCAGCCTGAAATAG
Upstream 100 bases:
>100_bases CGTAGACGCTTCGCTAAACGGAGGAGTCAATGCGGTGCCGAAAAGGATCTGAAGGAGACATGCTATTTTTTACCGACTGA TACTGTCACTGTTATTTTTG
Downstream 100 bases:
>100_bases ACCTGCTTCTCCCGGATCAGGAGTAATATAGGTAAAGGTGGTAACGGCAGCAAGTAAAGCCATTACCAAGGGGGAATTCG TCATGAGCAAAAACGCACAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 417; Mature: 417
Protein sequence:
>417_residues MLASVCASAAAPPSSINLTVETTAADLATIINQSLPKELYKGQGGLGTSVSVVRTGPMVVNAADNYLYLTLPVQLTFKYV MYESYPLKAGLKFKVKVNVTPDWRLKTEFYYMGLSDNLADDFKVGPLSLKPKSMVDNISQPVQKLLAPVIDAKVNDAVQL KPKVARLWQNAFSPTLVSKEFSAWLKLAPERIVMSPLSAANNQVRLSIGIVTGAEIVVGPKPTPAPVKALPQVQQLQAFD KAFRIQLGTDIFYADLVEALKPVLLEKTFGEDKKITVKGFNLKGEDGRLIVILNATGDFNGELTLLAKPVYNPQNNSLTF EDVDFDTKGAGVLIGAGSWLFSSTIKKTIKTKLDGSVSEQLEKARGKASSALASVQIAEHVRLTGAVKSLGLGEPAVLSD RLSLQVVALGESSVSLK
Sequences:
>Translated_417_residues MLASVCASAAAPPSSINLTVETTAADLATIINQSLPKELYKGQGGLGTSVSVVRTGPMVVNAADNYLYLTLPVQLTFKYV MYESYPLKAGLKFKVKVNVTPDWRLKTEFYYMGLSDNLADDFKVGPLSLKPKSMVDNISQPVQKLLAPVIDAKVNDAVQL KPKVARLWQNAFSPTLVSKEFSAWLKLAPERIVMSPLSAANNQVRLSIGIVTGAEIVVGPKPTPAPVKALPQVQQLQAFD KAFRIQLGTDIFYADLVEALKPVLLEKTFGEDKKITVKGFNLKGEDGRLIVILNATGDFNGELTLLAKPVYNPQNNSLTF EDVDFDTKGAGVLIGAGSWLFSSTIKKTIKTKLDGSVSEQLEKARGKASSALASVQIAEHVRLTGAVKSLGLGEPAVLSD RLSLQVVALGESSVSLK >Mature_417_residues MLASVCASAAAPPSSINLTVETTAADLATIINQSLPKELYKGQGGLGTSVSVVRTGPMVVNAADNYLYLTLPVQLTFKYV MYESYPLKAGLKFKVKVNVTPDWRLKTEFYYMGLSDNLADDFKVGPLSLKPKSMVDNISQPVQKLLAPVIDAKVNDAVQL KPKVARLWQNAFSPTLVSKEFSAWLKLAPERIVMSPLSAANNQVRLSIGIVTGAEIVVGPKPTPAPVKALPQVQQLQAFD KAFRIQLGTDIFYADLVEALKPVLLEKTFGEDKKITVKGFNLKGEDGRLIVILNATGDFNGELTLLAKPVYNPQNNSLTF EDVDFDTKGAGVLIGAGSWLFSSTIKKTIKTKLDGSVSEQLEKARGKASSALASVQIAEHVRLTGAVKSLGLGEPAVLSD RLSLQVVALGESSVSLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44820; Mature: 44820
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLASVCASAAAPPSSINLTVETTAADLATIINQSLPKELYKGQGGLGTSVSVVRTGPMVV CCHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE NAADNYLYLTLPVQLTFKYVMYESYPLKAGLKFKVKVNVTPDWRLKTEFYYMGLSDNLAD EECCCEEEEEEEHEEEEEEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCC DFKVGPLSLKPKSMVDNISQPVQKLLAPVIDAKVNDAVQLKPKVARLWQNAFSPTLVSKE CCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHCCCCCHHHHH FSAWLKLAPERIVMSPLSAANNQVRLSIGIVTGAEIVVGPKPTPAPVKALPQVQQLQAFD HHHHHHCCCHHHEECCHHCCCCEEEEEEEEEECCEEEECCCCCCCHHHHCCHHHHHHHHH KAFRIQLGTDIFYADLVEALKPVLLEKTFGEDKKITVKGFNLKGEDGRLIVILNATGDFN HHEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEECCCCCC GELTLLAKPVYNPQNNSLTFEDVDFDTKGAGVLIGAGSWLFSSTIKKTIKTKLDGSVSEQ CEEEEEEECCCCCCCCCEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCHHHHH LEKARGKASSALASVQIAEHVRLTGAVKSLGLGEPAVLSDRLSLQVVALGESSVSLK HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEEECCCCCCCC >Mature Secondary Structure MLASVCASAAAPPSSINLTVETTAADLATIINQSLPKELYKGQGGLGTSVSVVRTGPMVV CCHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE NAADNYLYLTLPVQLTFKYVMYESYPLKAGLKFKVKVNVTPDWRLKTEFYYMGLSDNLAD EECCCEEEEEEEHEEEEEEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCC DFKVGPLSLKPKSMVDNISQPVQKLLAPVIDAKVNDAVQLKPKVARLWQNAFSPTLVSKE CCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHCCCCCHHHHH FSAWLKLAPERIVMSPLSAANNQVRLSIGIVTGAEIVVGPKPTPAPVKALPQVQQLQAFD HHHHHHCCCHHHEECCHHCCCCEEEEEEEEEECCEEEECCCCCCCHHHHCCHHHHHHHHH KAFRIQLGTDIFYADLVEALKPVLLEKTFGEDKKITVKGFNLKGEDGRLIVILNATGDFN HHEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEECCCCCC GELTLLAKPVYNPQNNSLTFEDVDFDTKGAGVLIGAGSWLFSSTIKKTIKTKLDGSVSEQ CEEEEEEECCCCCCCCCEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCHHHHH LEKARGKASSALASVQIAEHVRLTGAVKSLGLGEPAVLSDRLSLQVVALGESSVSLK HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA