| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is manB [H]
Identifier: 197117523
GI number: 197117523
Start: 1311630
End: 1312982
Strand: Reverse
Name: manB [H]
Synonym: Gbem_1134
Alternate gene names: 197117523
Gene position: 1312982-1311630 (Counterclockwise)
Preceding gene: 197117524
Following gene: 197117521
Centisome position: 28.45
GC content: 62.9
Gene sequence:
>1353_bases GTGAGCAACATGCACTGCTTCAAAGCCTACGACATCAGGGGGAGAGTCCCTGATGAACTGAACGAGGACCTCGCCTACCG CATCGGCCGGGCCTATGCCTCTTTCCTCGCACCCAAGAAGGTCATCGTCGGGCGCGACGTGCGCCTCTCCAGCGCCTCGC TCTGCACCGCGCTCGCCAACGGGCTTACCGACAGCGGGGTGGAGGTGTACGACATCGGCATCTGCGGCACCGAGCAGGTC TATTTCGCCACCTTCAGCGAGAAGATGGACGGCGGCATCATGGTGACCGCGAGCCACAACCCCATGGACTACAACGGCAT GAAACTCGTGCGCGAAGGCTCCCGCCCCATCAGCGGCGACAGCGGCCTGAACGCCATCCGCGACCTGGCCGAGCAAAACC GGTTCGAGGAGGTTTCGGCGAAGGGTAGCGTGCATCCGCTCGACATCGAGGAGAGCTATGTCTCGCATCTCTTGGGTTAT CTCGACCCGGGCACGCTGAAGCCGTTCAAGATCGTGGTCAACGCCGGCAACGGCTGCGCGGGGAGAACCATCGACCGCCT TGAATCCCGCCTCCCCTTCAGCTTCGTCAAGGTCCACCACGAGCCCGACGGCACCTTCCCCAACGGCATTCCGAACCCGC TGTTGCTTGAGAACCGCTCCGCAACGGCCGAGGCGGTACTGGCGCATGGAGCCGACCTGGGGCTTGCCTGGGACGGCGAT TTCGACCGCTGCTTCCTTTTCGACGCCAAGGGAAACTTCATCGAGGGGTACTACATCGTTGGGCTTCTGGCAGCCGCCAT GCTTCAGAAACACCCCGGCGCCCGGATCATACACGACCCGAGGCTCACCTGGAACACGGTCGACGTGGTGACGGCGGCGG GGGGCGTGCCGGTGATGAGCAAGACGGGACACGCCTTCATCAAAGAGCGGATGAGGGCCGAGGATGCGGTCTACGGCGGC GAGATGAGCGCCCACCACTATTTCCGCGACTTCGCTTACTGCGACAGCGGAATGGTCCCCTGGCTTCTGGTCCTGAACAT CATGGGAAAAACCGGGAAGACGCTGGCGGAACTTGTCGAGGAGAGGATGCGCCTTTACCCGGCCAGCGGCGAGATCAACA GAAAGCTCGCCGACCCGTTGGCCGCCATCGAGCGAATCGGCAAGACCTACCGGGAGAGCGCCTTGAGCATCGACGACACC GACGGCATGAGTATGGAGTTCCCACAATGGCGGTTCAACCTGCGCTGCTCCAACACCGAACCGGTGCTGCGGCTTAACGT CGAGTCGCGGGGCGATGAGGCGCTTATGAACGAGAAGACGGGGGAACTCCTCGCGCTGGTCGACGAGGTGTAA
Upstream 100 bases:
>100_bases AGCGCTTGAAATGACTATCAGCAACAATAAAAGGGGACAGGCTGGTTTTTCAGATCAAAAAGTAGCCTGTCCCCCTTAAA TGTATGGGGAGAATTTTCCG
Downstream 100 bases:
>100_bases TCACACCCTACCCATGCGTGTGGGGTGAAATGAAACCGGCGCCTCTTTCACAAGAAGACGCCGGTTGAGATTTATTTTCG AACTTCGCAGTACGCCTGGA
Product: phosphomannomutase
Products: NA
Alternate protein names: PMM [H]
Number of amino acids: Translated: 450; Mature: 449
Protein sequence:
>450_residues MSNMHCFKAYDIRGRVPDELNEDLAYRIGRAYASFLAPKKVIVGRDVRLSSASLCTALANGLTDSGVEVYDIGICGTEQV YFATFSEKMDGGIMVTASHNPMDYNGMKLVREGSRPISGDSGLNAIRDLAEQNRFEEVSAKGSVHPLDIEESYVSHLLGY LDPGTLKPFKIVVNAGNGCAGRTIDRLESRLPFSFVKVHHEPDGTFPNGIPNPLLLENRSATAEAVLAHGADLGLAWDGD FDRCFLFDAKGNFIEGYYIVGLLAAAMLQKHPGARIIHDPRLTWNTVDVVTAAGGVPVMSKTGHAFIKERMRAEDAVYGG EMSAHHYFRDFAYCDSGMVPWLLVLNIMGKTGKTLAELVEERMRLYPASGEINRKLADPLAAIERIGKTYRESALSIDDT DGMSMEFPQWRFNLRCSNTEPVLRLNVESRGDEALMNEKTGELLALVDEV
Sequences:
>Translated_450_residues MSNMHCFKAYDIRGRVPDELNEDLAYRIGRAYASFLAPKKVIVGRDVRLSSASLCTALANGLTDSGVEVYDIGICGTEQV YFATFSEKMDGGIMVTASHNPMDYNGMKLVREGSRPISGDSGLNAIRDLAEQNRFEEVSAKGSVHPLDIEESYVSHLLGY LDPGTLKPFKIVVNAGNGCAGRTIDRLESRLPFSFVKVHHEPDGTFPNGIPNPLLLENRSATAEAVLAHGADLGLAWDGD FDRCFLFDAKGNFIEGYYIVGLLAAAMLQKHPGARIIHDPRLTWNTVDVVTAAGGVPVMSKTGHAFIKERMRAEDAVYGG EMSAHHYFRDFAYCDSGMVPWLLVLNIMGKTGKTLAELVEERMRLYPASGEINRKLADPLAAIERIGKTYRESALSIDDT DGMSMEFPQWRFNLRCSNTEPVLRLNVESRGDEALMNEKTGELLALVDEV >Mature_449_residues SNMHCFKAYDIRGRVPDELNEDLAYRIGRAYASFLAPKKVIVGRDVRLSSASLCTALANGLTDSGVEVYDIGICGTEQVY FATFSEKMDGGIMVTASHNPMDYNGMKLVREGSRPISGDSGLNAIRDLAEQNRFEEVSAKGSVHPLDIEESYVSHLLGYL DPGTLKPFKIVVNAGNGCAGRTIDRLESRLPFSFVKVHHEPDGTFPNGIPNPLLLENRSATAEAVLAHGADLGLAWDGDF DRCFLFDAKGNFIEGYYIVGLLAAAMLQKHPGARIIHDPRLTWNTVDVVTAAGGVPVMSKTGHAFIKERMRAEDAVYGGE MSAHHYFRDFAYCDSGMVPWLLVLNIMGKTGKTLAELVEERMRLYPASGEINRKLADPLAAIERIGKTYRESALSIDDTD GMSMEFPQWRFNLRCSNTEPVLRLNVESRGDEALMNEKTGELLALVDEV
Specific function: Involved in GDP-mannose biosynthesis which serves as the activated sugar nucleotide precursor for mannose residues in cell surface polysaccharides. This enzyme participates in synthesis of the LPS O antigen [H]
COG id: COG1109
COG function: function code G; Phosphomannomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Escherichia coli, GI1788361, Length=456, Percent_Identity=64.0350877192982, Blast_Score=615, Evalue=1e-177, Organism=Escherichia coli, GI1789566, Length=456, Percent_Identity=27.8508771929825, Blast_Score=109, Evalue=4e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - InterPro: IPR005841 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.8 [H]
Molecular weight: Translated: 49552; Mature: 49421
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: PS00710 PGM_PMM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNMHCFKAYDIRGRVPDELNEDLAYRIGRAYASFLAPKKVIVGRDVRLSSASLCTALAN CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHH GLTDSGVEVYDIGICGTEQVYFATFSEKMDGGIMVTASHNPMDYNGMKLVREGSRPISGD CCCCCCCEEEEEECCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCC SGLNAIRDLAEQNRFEEVSAKGSVHPLDIEESYVSHLLGYLDPGTLKPFKIVVNAGNGCA CHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC GRTIDRLESRLPFSFVKVHHEPDGTFPNGIPNPLLLENRSATAEAVLAHGADLGLAWDGD CCCHHHHHHHCCEEEEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHCCCCEEEEECCC FDRCFLFDAKGNFIEGYYIVGLLAAAMLQKHPGARIIHDPRLTWNTVDVVTAAGGVPVMS CCEEEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEECCCCCCCC KTGHAFIKERMRAEDAVYGGEMSAHHYFRDFAYCDSGMVPWLLVLNIMGKTGKTLAELVE CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHH ERMRLYPASGEINRKLADPLAAIERIGKTYRESALSIDDTDGMSMEFPQWRFNLRCSNTE HHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCC PVLRLNVESRGDEALMNEKTGELLALVDEV CEEEEEECCCCCHHHHCCCCCHHHHHHHCC >Mature Secondary Structure SNMHCFKAYDIRGRVPDELNEDLAYRIGRAYASFLAPKKVIVGRDVRLSSASLCTALAN CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHH GLTDSGVEVYDIGICGTEQVYFATFSEKMDGGIMVTASHNPMDYNGMKLVREGSRPISGD CCCCCCCEEEEEECCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCC SGLNAIRDLAEQNRFEEVSAKGSVHPLDIEESYVSHLLGYLDPGTLKPFKIVVNAGNGCA CHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC GRTIDRLESRLPFSFVKVHHEPDGTFPNGIPNPLLLENRSATAEAVLAHGADLGLAWDGD CCCHHHHHHHCCEEEEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHCCCCEEEEECCC FDRCFLFDAKGNFIEGYYIVGLLAAAMLQKHPGARIIHDPRLTWNTVDVVTAAGGVPVMS CCEEEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEECCCCCCCC KTGHAFIKERMRAEDAVYGGEMSAHHYFRDFAYCDSGMVPWLLVLNIMGKTGKTLAELVE CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHH ERMRLYPASGEINRKLADPLAAIERIGKTYRESALSIDDTDGMSMEFPQWRFNLRCSNTE HHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCC PVLRLNVESRGDEALMNEKTGELLALVDEV CEEEEEECCCCCHHHHCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1383393 [H]