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The map label for this gene is ybeQ [H]

Identifier: 197117516

GI number: 197117516

Start: 1304882

End: 1305700

Strand: Direct

Name: ybeQ [H]

Synonym: Gbem_1127

Alternate gene names: 197117516

Gene position: 1304882-1305700 (Clockwise)

Preceding gene: 197117515

Following gene: 197117517

Centisome position: 28.27

GC content: 56.9

Gene sequence:

>819_bases
ATGAAGAAATCTCTGCCCGGTTTTGTTCTGTTGGCATCTTCTCTAATCTGTTCCCTTGCAATTGCAGCCAGCAATTTGGA
TATGGCCGAAAAAGCGCTAAACGACGGAGACTATGAAAAGGCCTTGCAACTCTACCGGGCGGATGGCGGGGCGCAGGCCC
TCAATAACATTGGCATTATGTACTATAGAGGAGATGGTGTTCGTCAGGACAAAGCCGAGGCGGTGCACTGGCTATTGAAG
GCGGCCGCTCTCGGTAATGAGGATGCTCAGGTGAGCCTCGGGCAGATGTATAGAACCGGCGACGGCGTGGAGGAGAATCC
CGCTGAGGCCGTAAAGTGGTACCGCAAAGCAGGTGCGCAAGGCAACCAGGAGGCGCAGGCCGAGCTTGAGCGTTTGTACG
CCCTCAAAGAAGACGTAGAGACCAAATGGTACCGTCGTGACGCCGAGCGCGGAATGGTGCGAGCCCAGGTGAATCTGGGC
CTGATCTATTACTTTGGTCGTGATCTCGGGGCGGATAAGCGCGAAGCAGCCCTCTGGTTTAGCAAGGCTGCCGTGCAGGG
CGATGCTCAGGCACAATACTACTACGGCCTGATGCTTTCTGAAGGTGACGGCATCGATCCGGACGCGGTAGAGGGCGCCA
GGCTCTTGCTGTCAGCGGCCAAGGCTGGGCACGCCGATGCGCAGTATCAGATTTCAAAGTGCTACCTGCATGGTAAAGGC
GTCGCTCGCAACGCTGACGAGGCTGTGGCATGGCTTCGCAAGGCCGCCTCGCAAGGTAACCATAACGCCGCATCTGAACT
TCAGTTGCTCGGGAAGTAG

Upstream 100 bases:

>100_bases
CAGATCTTCGAAAGCTTCAAATAGCGCCTTGGAAGACCGTCACCTCCATACCAACGGGTGACCTGCCACCCGGTTTCTTG
CATGGCTGAGGAAAACGACG

Downstream 100 bases:

>100_bases
GTGAAGGTCCGCACATAAGTCATCGCAAAATGTGAAAAAATTCTGGAACATAGTAGGTCAGGAGGTAGAGTGTGAAAAGA
TTAGTTGTGGGAATTCTGGT

Product: SEL1 repeat-containing lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MKKSLPGFVLLASSLICSLAIAASNLDMAEKALNDGDYEKALQLYRADGGAQALNNIGIMYYRGDGVRQDKAEAVHWLLK
AAALGNEDAQVSLGQMYRTGDGVEENPAEAVKWYRKAGAQGNQEAQAELERLYALKEDVETKWYRRDAERGMVRAQVNLG
LIYYFGRDLGADKREAALWFSKAAVQGDAQAQYYYGLMLSEGDGIDPDAVEGARLLLSAAKAGHADAQYQISKCYLHGKG
VARNADEAVAWLRKAASQGNHNAASELQLLGK

Sequences:

>Translated_272_residues
MKKSLPGFVLLASSLICSLAIAASNLDMAEKALNDGDYEKALQLYRADGGAQALNNIGIMYYRGDGVRQDKAEAVHWLLK
AAALGNEDAQVSLGQMYRTGDGVEENPAEAVKWYRKAGAQGNQEAQAELERLYALKEDVETKWYRRDAERGMVRAQVNLG
LIYYFGRDLGADKREAALWFSKAAVQGDAQAQYYYGLMLSEGDGIDPDAVEGARLLLSAAKAGHADAQYQISKCYLHGKG
VARNADEAVAWLRKAASQGNHNAASELQLLGK
>Mature_272_residues
MKKSLPGFVLLASSLICSLAIAASNLDMAEKALNDGDYEKALQLYRADGGAQALNNIGIMYYRGDGVRQDKAEAVHWLLK
AAALGNEDAQVSLGQMYRTGDGVEENPAEAVKWYRKAGAQGNQEAQAELERLYALKEDVETKWYRRDAERGMVRAQVNLG
LIYYFGRDLGADKREAALWFSKAAVQGDAQAQYYYGLMLSEGDGIDPDAVEGARLLLSAAKAGHADAQYQISKCYLHGKG
VARNADEAVAWLRKAASQGNHNAASELQLLGK

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI151301150, Length=251, Percent_Identity=30.2788844621514, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI19923669, Length=183, Percent_Identity=30.6010928961749, Blast_Score=76, Evalue=2e-14,
Organism=Escherichia coli, GI87081769, Length=217, Percent_Identity=33.1797235023041, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1786867, Length=86, Percent_Identity=40.6976744186046, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17563256, Length=235, Percent_Identity=27.6595744680851, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 29612; Mature: 29612

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSLPGFVLLASSLICSLAIAASNLDMAEKALNDGDYEKALQLYRADGGAQALNNIGIM
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHCCCEE
YYRGDGVRQDKAEAVHWLLKAAALGNEDAQVSLGQMYRTGDGVEENPAEAVKWYRKAGAQ
EEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
GNQEAQAELERLYALKEDVETKWYRRDAERGMVRAQVNLGLIYYFGRDLGADKREAALWF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECEEEEEEECCCCCCCHHHHHHHH
SKAAVQGDAQAQYYYGLMLSEGDGIDPDAVEGARLLLSAAKAGHADAQYQISKCYLHGKG
HHHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCC
VARNADEAVAWLRKAASQGNHNAASELQLLGK
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCC
>Mature Secondary Structure
MKKSLPGFVLLASSLICSLAIAASNLDMAEKALNDGDYEKALQLYRADGGAQALNNIGIM
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHCCCEE
YYRGDGVRQDKAEAVHWLLKAAALGNEDAQVSLGQMYRTGDGVEENPAEAVKWYRKAGAQ
EEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
GNQEAQAELERLYALKEDVETKWYRRDAERGMVRAQVNLGLIYYFGRDLGADKREAALWF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECEEEEEEECCCCCCCHHHHHHHH
SKAAVQGDAQAQYYYGLMLSEGDGIDPDAVEGARLLLSAAKAGHADAQYQISKCYLHGKG
HHHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCC
VARNADEAVAWLRKAASQGNHNAASELQLLGK
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]