| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is 197117513
Identifier: 197117513
GI number: 197117513
Start: 1300615
End: 1302591
Strand: Direct
Name: 197117513
Synonym: Gbem_1124
Alternate gene names: NA
Gene position: 1300615-1302591 (Clockwise)
Preceding gene: 197117512
Following gene: 197117514
Centisome position: 28.18
GC content: 55.29
Gene sequence:
>1977_bases ATGAAAATGCACGATATGCGTAAGGGCAGAAGAATTTTGGTTTTTATGCTGACGGCGCTGCTGGCGGTGATGGTTTCGTT CACCGGTAGCAGGACAGCCCTCGCCGCAAAGGCGTTTGTCCGAAAAGATTGTTCTGACTGTCACAAAAAATTCGACGACA AATTTTCCTCTGTGAAGTACGTGCACCCGATGGTGCACGACAAGAAGTGTGAGGACTGCCACCTGCGTCACGGCATTATC CCGAAGCTGCTTCTCAAGCACGATGGCAACCAACTCTGCCTGAACTGCCATCCCGCCAACAAGATAGGTTTGAACAAGCC CAAGGTGCATACCCCCATTGCAAAGGGTAAATGTACGACCTGTCACAATCCCCATGGTTCTGATTCCCGTTATTTCATGA AGTCAGCTGGGAACGAAGCCTGCTTCCAGTGCCATAAGAAATCGGTATTTGAAAAGAAGGTCGTGCACAAGGTGCTCACC GACAAAGGGTGCAGTGCCTGTCATGTGGCCCACAGCTCGGATTACAACAACCTGCTCTCCTCGGAGGTGCCAAAACTTTG CCTGAACTGCCACGACAAGGGTAGTGCCTCCTTCAAGAAGGCGCACGGCAACTACCCGGTCGACCAGAAAAACTGCACTG TATGCCACAACCCGCACGCCTCTGATCAACCAAAGCTGCTCAAAGGCAGCGTGCACAATCCTGTTGCCTCCGCCGGTTGT GACGGCTGTCACAACCCGCCCAATTCGGCCAATCCCTTCGGTGTTTCTCTGAAGAAGGGGGCACTGTGCGCCCAGTGCCA CGAAAGCGCCTCCCTTAAAGGGGGCGGTACCGTCGAGCATATGCCATTTAAGGAAGGTGACTGTCTGTTGTGCCACAACC CGCATGCTTCAGAGCAGACAAAGCTGTTGGTGCAGGAAGGCAACGATCTCTGCAAGATCTGTCATGCGTCGGAAACGGCA TCCCACCTTTTCAAGCACAAGGCTGTGACCGATGGCAAGGGTTGCCTGTCCTGCCACAAACCGCACGCTGCGGCCAAGAA GAAGCTTCTCGTCGCCGAGGGCGCCGACCTTTGCTACACCTGCCATGCGAAGACCAAGGAGGCGCTGAAAGGCAAGGACG TGCACGAGCCGTTCTCCGGCGGGGAGTGCAGCAGTTGCCACGATGCACACGGATCCAACTTCCCCGGCATGATGAAGGAC CGCATGGATACCGTCTGCTTCAATTGCCACAGCGACGCGGAAACCCGGTTCAAGAAGAATTACACCCACAAGCCGGTCCA GGATTCCAACTGTGCTGCCTGTCACAAGCCGCACTCCTCCGATCAGAAGAAGCTCCTGAAGGGTGTGGGTGCACAGTTGT GCTCGTCATGCCACGCCGAACTCATGAAGCCTATAAGCCAAGGGATCAACCACCAGCCCTTCACCGATGGGGACTGCCTT GGCTGCCATGATCCCCATGCCAGCAACATCCAGGGGATGATCACCAGCAACCAAAGCGAACTGTGCGTTAACTGCCACAG CGATCTCAACAAAAACGCGAAGGATGCCAAGAGCAACCATGCGCCCTTCACCAAGGGGGACTGCACCAAGTGCCACAGCC CGCACAAGGCGAAACTCAACAAGCTGCTTCTTGCGCAGAGTCCCGACCTCTGCGTCAACTGCCATAAGGACATCAAGGAG AAGATCGCCCGGCAAAGGCCGCACCCCCCCGCGCAGAAAGATTGCTCGACTTGCCACCTGCCGCATCTCTCCAAGCAGAA GTCTCTTCTGGTCGAGCCGTTGCAGACGATGTGCTCGGAATGCCATGAAGTCGAAAAGCCTGCCTTCGTCAAAGCTCATA TAGGCATCAAGGCCGCCGACATGGATTGCATCAGCTGCCACAGCCCGCATGCTTCGAACGATCCCAAGTTTTTCAAGGAT GTCGTGCATCCTCCGTTTGCCGGCAGAACGTGCGATGACTGCCATATAAAACAATAG
Upstream 100 bases:
>100_bases TGGTTCAAGAAGCTGAGGGAAGCCTATCCCGTGAAGATTTATCTTGAATCGCGGTAATGCCGGATTGGTTAAACTGCCAA AATTAGGCCAAGGGGACGGT
Downstream 100 bases:
>100_bases CCATTTGAGGAGCTTTACTATGATAAATAGACATAAGGTATTAATCCTGTTTGGTGTTATCGGCTCTCTCATGGTCGGCC TCATCGCCAACGCTCAAGAT
Product: cytochrome c
Products: NA
Alternate protein names: Decaheme C-Type Cytochrome DmsE Family; Decaheme Cytochrome C MtrA; Multiheme Cytochrome; Nitrate/TMAO Reductase; Multiheme C-Type Cytochrome; Doubled CXXCH Domain-Containing Protein; Cytochrome C; Decaheme Cytochrome C; Cytochrome; Decaheme Cytochrome C MtrD; Multiheme Cytochrome Family Protein; Double CXXCH Motif-Containing Protein; Cytochrome C-Type Protein NrfB
Number of amino acids: Translated: 658; Mature: 658
Protein sequence:
>658_residues MKMHDMRKGRRILVFMLTALLAVMVSFTGSRTALAAKAFVRKDCSDCHKKFDDKFSSVKYVHPMVHDKKCEDCHLRHGII PKLLLKHDGNQLCLNCHPANKIGLNKPKVHTPIAKGKCTTCHNPHGSDSRYFMKSAGNEACFQCHKKSVFEKKVVHKVLT DKGCSACHVAHSSDYNNLLSSEVPKLCLNCHDKGSASFKKAHGNYPVDQKNCTVCHNPHASDQPKLLKGSVHNPVASAGC DGCHNPPNSANPFGVSLKKGALCAQCHESASLKGGGTVEHMPFKEGDCLLCHNPHASEQTKLLVQEGNDLCKICHASETA SHLFKHKAVTDGKGCLSCHKPHAAAKKKLLVAEGADLCYTCHAKTKEALKGKDVHEPFSGGECSSCHDAHGSNFPGMMKD RMDTVCFNCHSDAETRFKKNYTHKPVQDSNCAACHKPHSSDQKKLLKGVGAQLCSSCHAELMKPISQGINHQPFTDGDCL GCHDPHASNIQGMITSNQSELCVNCHSDLNKNAKDAKSNHAPFTKGDCTKCHSPHKAKLNKLLLAQSPDLCVNCHKDIKE KIARQRPHPPAQKDCSTCHLPHLSKQKSLLVEPLQTMCSECHEVEKPAFVKAHIGIKAADMDCISCHSPHASNDPKFFKD VVHPPFAGRTCDDCHIKQ
Sequences:
>Translated_658_residues MKMHDMRKGRRILVFMLTALLAVMVSFTGSRTALAAKAFVRKDCSDCHKKFDDKFSSVKYVHPMVHDKKCEDCHLRHGII PKLLLKHDGNQLCLNCHPANKIGLNKPKVHTPIAKGKCTTCHNPHGSDSRYFMKSAGNEACFQCHKKSVFEKKVVHKVLT DKGCSACHVAHSSDYNNLLSSEVPKLCLNCHDKGSASFKKAHGNYPVDQKNCTVCHNPHASDQPKLLKGSVHNPVASAGC DGCHNPPNSANPFGVSLKKGALCAQCHESASLKGGGTVEHMPFKEGDCLLCHNPHASEQTKLLVQEGNDLCKICHASETA SHLFKHKAVTDGKGCLSCHKPHAAAKKKLLVAEGADLCYTCHAKTKEALKGKDVHEPFSGGECSSCHDAHGSNFPGMMKD RMDTVCFNCHSDAETRFKKNYTHKPVQDSNCAACHKPHSSDQKKLLKGVGAQLCSSCHAELMKPISQGINHQPFTDGDCL GCHDPHASNIQGMITSNQSELCVNCHSDLNKNAKDAKSNHAPFTKGDCTKCHSPHKAKLNKLLLAQSPDLCVNCHKDIKE KIARQRPHPPAQKDCSTCHLPHLSKQKSLLVEPLQTMCSECHEVEKPAFVKAHIGIKAADMDCISCHSPHASNDPKFFKD VVHPPFAGRTCDDCHIKQ >Mature_658_residues MKMHDMRKGRRILVFMLTALLAVMVSFTGSRTALAAKAFVRKDCSDCHKKFDDKFSSVKYVHPMVHDKKCEDCHLRHGII PKLLLKHDGNQLCLNCHPANKIGLNKPKVHTPIAKGKCTTCHNPHGSDSRYFMKSAGNEACFQCHKKSVFEKKVVHKVLT DKGCSACHVAHSSDYNNLLSSEVPKLCLNCHDKGSASFKKAHGNYPVDQKNCTVCHNPHASDQPKLLKGSVHNPVASAGC DGCHNPPNSANPFGVSLKKGALCAQCHESASLKGGGTVEHMPFKEGDCLLCHNPHASEQTKLLVQEGNDLCKICHASETA SHLFKHKAVTDGKGCLSCHKPHAAAKKKLLVAEGADLCYTCHAKTKEALKGKDVHEPFSGGECSSCHDAHGSNFPGMMKD RMDTVCFNCHSDAETRFKKNYTHKPVQDSNCAACHKPHSSDQKKLLKGVGAQLCSSCHAELMKPISQGINHQPFTDGDCL GCHDPHASNIQGMITSNQSELCVNCHSDLNKNAKDAKSNHAPFTKGDCTKCHSPHKAKLNKLLLAQSPDLCVNCHKDIKE KIARQRPHPPAQKDCSTCHLPHLSKQKSLLVEPLQTMCSECHEVEKPAFVKAHIGIKAADMDCISCHSPHASNDPKFFKD VVHPPFAGRTCDDCHIKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72014; Mature: 72014
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
7.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 10.2 %Cys+Met (Translated Protein) 7.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 10.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMHDMRKGRRILVFMLTALLAVMVSFTGSRTALAAKAFVRKDCSDCHKKFDDKFSSVKY CCCCCHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VHPMVHDKKCEDCHLRHGIIPKLLLKHDGNQLCLNCHPANKIGLNKPKVHTPIAKGKCTT HHHHHCCCCCCHHHHHCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC CHNPHGSDSRYFMKSAGNEACFQCHKKSVFEKKVVHKVLTDKGCSACHVAHSSDYNNLLS CCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHH SEVPKLCLNCHDKGSASFKKAHGNYPVDQKNCTVCHNPHASDQPKLLKGSVHNPVASAGC HHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCHHHCCC DGCHNPPNSANPFGVSLKKGALCAQCHESASLKGGGTVEHMPFKEGDCLLCHNPHASEQT CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEECCCCCCCEEEECCCCCCHHH KLLVQEGNDLCKICHASETASHLFKHKAVTDGKGCLSCHKPHAAAKKKLLVAEGADLCYT HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHEEEEECCCCEEEE CHAKTKEALKGKDVHEPFSGGECSSCHDAHGSNFPGMMKDRMDTVCFNCHSDAETRFKKN ECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEECCCCCHHHHHHHC YTHKPVQDSNCAACHKPHSSDQKKLLKGVGAQLCSSCHAELMKPISQGINHQPFTDGDCL CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC GCHDPHASNIQGMITSNQSELCVNCHSDLNKNAKDAKSNHAPFTKGDCTKCHSPHKAKLN CCCCCCCCCCEEEEECCCCCEEEECHHHCCCCHHHHCCCCCCCCCCCCHHCCCCHHHHHH KLLLAQSPDLCVNCHKDIKEKIARQRPHPPAQKDCSTCHLPHLSKQKSLLVEPLQTMCSE HHHHCCCCCCEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH CHEVEKPAFVKAHIGIKAADMDCISCHSPHASNDPKFFKDVVHPPFAGRTCDDCHIKQ HHHCCCCCEEEEECCEEECCCCHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKMHDMRKGRRILVFMLTALLAVMVSFTGSRTALAAKAFVRKDCSDCHKKFDDKFSSVKY CCCCCHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VHPMVHDKKCEDCHLRHGIIPKLLLKHDGNQLCLNCHPANKIGLNKPKVHTPIAKGKCTT HHHHHCCCCCCHHHHHCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC CHNPHGSDSRYFMKSAGNEACFQCHKKSVFEKKVVHKVLTDKGCSACHVAHSSDYNNLLS CCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHH SEVPKLCLNCHDKGSASFKKAHGNYPVDQKNCTVCHNPHASDQPKLLKGSVHNPVASAGC HHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCHHHCCC DGCHNPPNSANPFGVSLKKGALCAQCHESASLKGGGTVEHMPFKEGDCLLCHNPHASEQT CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEECCCCCCCEEEECCCCCCHHH KLLVQEGNDLCKICHASETASHLFKHKAVTDGKGCLSCHKPHAAAKKKLLVAEGADLCYT HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHEEEEECCCCEEEE CHAKTKEALKGKDVHEPFSGGECSSCHDAHGSNFPGMMKDRMDTVCFNCHSDAETRFKKN ECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEECCCCCHHHHHHHC YTHKPVQDSNCAACHKPHSSDQKKLLKGVGAQLCSSCHAELMKPISQGINHQPFTDGDCL CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC GCHDPHASNIQGMITSNQSELCVNCHSDLNKNAKDAKSNHAPFTKGDCTKCHSPHKAKLN CCCCCCCCCCEEEEECCCCCEEEECHHHCCCCHHHHCCCCCCCCCCCCHHCCCCHHHHHH KLLLAQSPDLCVNCHKDIKEKIARQRPHPPAQKDCSTCHLPHLSKQKSLLVEPLQTMCSE HHHHCCCCCCEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH CHEVEKPAFVKAHIGIKAADMDCISCHSPHASNDPKFFKDVVHPPFAGRTCDDCHIKQ HHHCCCCCEEEEECCEEECCCCHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA