| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is exoM [H]
Identifier: 197117465
GI number: 197117465
Start: 1248604
End: 1249521
Strand: Direct
Name: exoM [H]
Synonym: Gbem_1076
Alternate gene names: 197117465
Gene position: 1248604-1249521 (Clockwise)
Preceding gene: 197117464
Following gene: 197117466
Centisome position: 27.05
GC content: 54.68
Gene sequence:
>918_bases ATGAGTCTATCGCCCATGCACATAACCGTCTGTATTTGCACCTTCAAGAGACCAGAAATGTTGCAGCGCCTGCTGATCAC GCTTGAGGGGCAGCAAACCGACGGGAAGTTCAGCTATTCGGCGGTGGTCGTCGATAATGATGCCAACCGCTCAGCGTTGG AAACTATTGCGCTGTTCCAGAAGTATCACACCCTGCCAGTGACCTACCTGGTGGAACCGGAGCAGAACATCGCCCGCGCC AGGAATAAGGCAGTCGATAATGCGACTGGTGACTTCATCGCCTTCATAGACGATGACGAGTTCCCGGAAAACCGGTGGCT GCTGCAGATGGTGAATATCTTAGAGGGATCCGGTGCAGCCGGGGTGCTGGGGCCGGTGCGCCCCCATTTTGAAAAGGGGT GTCCCAAGTGGATCATCAAGAGCGGCCTGTGTGATCGGAAAAGCCACGCCACCGGAACCATTATGCGTTCCGCCGATACC CGCACAGGAAACGTTCTGATCAGCAGGGAGATCTTCAAAGATACGCGTAACAGGTTCGATCCTGCCTTTGGCAGAAGTGG CGGCGAGGATGTCAGATTCTTCGAGTACGTTATGCAGAAGGGGCATACTTTCCTCTGGAGCAACGAGGCCTTGGTCTATG AAACTGTCCCACACGAGCGCTGGAGTGCATCCTTTTATCTACGAAGGGCGGTACGGAAGGGGGGGGTGAGCGGCTCCGTG ATCAGGAAAAGGGGATTCTCCTTTCGGCACCTTGCTTTCGCTCTCGCAGCTTTCTGCGTCTATGCCACAACCTTGCCCTT CGCCGTCCTGGCTGGAAAGCACTTCTGCATCAAATGCTTGGTGAAAACGGCTTATCACTTGGCATGGCTTTCGGGGTTTT TCGGTCACGTTCAGATAGCTCTAAAGGACGACCAGTAG
Upstream 100 bases:
>100_bases CAAACTCCTTCCCGCCAGCGAACCGTAGGCCCTGAAAAAAAGTCATTTGGCAGGAATCGTCGTAACGCCCCCCAATGGAG GTTCACAAGGAGAACGCGGG
Downstream 100 bases:
>100_bases CTCCTTTGACGGCTCAGACTGCCGTCAAGGAAAGGGGGCACCGCGATGTTAGGGATGTTGGCATTACTTGCCTGTTTTGC CTTAGTCACTTGGCTCTTTG
Product: family glycosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 305; Mature: 304
Protein sequence:
>305_residues MSLSPMHITVCICTFKRPEMLQRLLITLEGQQTDGKFSYSAVVVDNDANRSALETIALFQKYHTLPVTYLVEPEQNIARA RNKAVDNATGDFIAFIDDDEFPENRWLLQMVNILEGSGAAGVLGPVRPHFEKGCPKWIIKSGLCDRKSHATGTIMRSADT RTGNVLISREIFKDTRNRFDPAFGRSGGEDVRFFEYVMQKGHTFLWSNEALVYETVPHERWSASFYLRRAVRKGGVSGSV IRKRGFSFRHLAFALAAFCVYATTLPFAVLAGKHFCIKCLVKTAYHLAWLSGFFGHVQIALKDDQ
Sequences:
>Translated_305_residues MSLSPMHITVCICTFKRPEMLQRLLITLEGQQTDGKFSYSAVVVDNDANRSALETIALFQKYHTLPVTYLVEPEQNIARA RNKAVDNATGDFIAFIDDDEFPENRWLLQMVNILEGSGAAGVLGPVRPHFEKGCPKWIIKSGLCDRKSHATGTIMRSADT RTGNVLISREIFKDTRNRFDPAFGRSGGEDVRFFEYVMQKGHTFLWSNEALVYETVPHERWSASFYLRRAVRKGGVSGSV IRKRGFSFRHLAFALAAFCVYATTLPFAVLAGKHFCIKCLVKTAYHLAWLSGFFGHVQIALKDDQ >Mature_304_residues SLSPMHITVCICTFKRPEMLQRLLITLEGQQTDGKFSYSAVVVDNDANRSALETIALFQKYHTLPVTYLVEPEQNIARAR NKAVDNATGDFIAFIDDDEFPENRWLLQMVNILEGSGAAGVLGPVRPHFEKGCPKWIIKSGLCDRKSHATGTIMRSADTR TGNVLISREIFKDTRNRFDPAFGRSGGEDVRFFEYVMQKGHTFLWSNEALVYETVPHERWSASFYLRRAVRKGGVSGSVI RKRGFSFRHLAFALAAFCVYATTLPFAVLAGKHFCIKCLVKTAYHLAWLSGFFGHVQIALKDDQ
Specific function: Glycosyltransferase required for the synthesis of succinoglycan (EPS I). Needed for the addition of the fourth sugar (glucose), catalyzes the formation of a beta-1,4 linkage between the third acetylated sugar and the fourth sugar [H]
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 34381; Mature: 34250
Theoretical pI: Translated: 9.22; Mature: 9.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLSPMHITVCICTFKRPEMLQRLLITLEGQQTDGKFSYSAVVVDNDANRSALETIALFQ CCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHH KYHTLPVTYLVEPEQNIARARNKAVDNATGDFIAFIDDDEFPENRWLLQMVNILEGSGAA HHCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCC GVLGPVRPHFEKGCPKWIIKSGLCDRKSHATGTIMRSADTRTGNVLISREIFKDTRNRFD CCCCCCCHHHHHCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEHHHHHHHHHHCC PAFGRSGGEDVRFFEYVMQKGHTFLWSNEALVYETVPHERWSASFYLRRAVRKGGVSGSV CCCCCCCCCCHHHHHHHHHCCCEEEEECCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHH IRKRGFSFRHLAFALAAFCVYATTLPFAVLAGKHFCIKCLVKTAYHLAWLSGFFGHVQIA HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEEE LKDDQ EECCC >Mature Secondary Structure SLSPMHITVCICTFKRPEMLQRLLITLEGQQTDGKFSYSAVVVDNDANRSALETIALFQ CCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHH KYHTLPVTYLVEPEQNIARARNKAVDNATGDFIAFIDDDEFPENRWLLQMVNILEGSGAA HHCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCC GVLGPVRPHFEKGCPKWIIKSGLCDRKSHATGTIMRSADTRTGNVLISREIFKDTRNRFD CCCCCCCHHHHHCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEHHHHHHHHHHCC PAFGRSGGEDVRFFEYVMQKGHTFLWSNEALVYETVPHERWSASFYLRRAVRKGGVSGSV CCCCCCCCCCHHHHHHHHHCCCEEEEECCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHH IRKRGFSFRHLAFALAAFCVYATTLPFAVLAGKHFCIKCLVKTAYHLAWLSGFFGHVQIA HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEEE LKDDQ EECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8226645; 8246891; 11481431 [H]