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The map label for this gene is degT [H]

Identifier: 197117456

GI number: 197117456

Start: 1238798

End: 1239898

Strand: Direct

Name: degT [H]

Synonym: Gbem_1067

Alternate gene names: 197117456

Gene position: 1238798-1239898 (Clockwise)

Preceding gene: 197117455

Following gene: 197117457

Centisome position: 26.84

GC content: 59.49

Gene sequence:

>1101_bases
ATGAAAGTGCCATTTCTCAACCTCAAAGCACAATATGACTCCATAGCACATGAGGTGGAACAGTCGATCCGGGAGGTGCT
CTCCACCTGTGCCTTTTCCGGCGGACCCTACGTGCAGAAGTTCGAGGAGGAGTTCGCTTCCTTTTGCGGATGTAAGTGGG
CGGTCGGGGTAGGCAGCGGGACCGACGCGCTTTGGCTCGCCCTGCTGGGATTGGGGGTGCAACCTGGTGACGAAGTCATA
ACCGTCCCCAACAGCTTCATAGCGACAGCGGAGGCGATCTCCCTTTGCGGCGCGCAACCGGTCTTCATAGATGTTGGCGA
GGATAGCTTCACCATGAATCCGGCCCTTCTGGAGCAGGCGATCTCACCGCGCACCCGGGCCATCATCCCGGTGCACCTCT
ACGGGCAGGCGGCGGACATGGATGCCATTCTTGCGATCGCCGACAGGCATGGCATCCCTGTTGTGGAGGACGCCTGCCAG
GCTCACGGAGCGGAGTACAAGGGGCGCAGGGCTGGCTCGATGGGGATTGCAGGGTGCTTCAGCTTTTACCCCGGCAAAAA
CCTGGGCGCCTACGGCGAAGCCGGCTGTGTGGTCACTAAGGACGAGGACCTGGCTAAGAAGCTAAGGATGCTGCGCGATC
ACGGACAGTCCCAAAAGTACTATCACCAACTGGTGGGGATCAATGGTCGTATGGACGGCATCCAAGGCGCGGTCCTCAGC
GCGAAGTTGAAATACCTCGATTCCTGGAATGCGTTCCGGCGCACGCATGCCTCTTTCTATCAGGAGGCGCTGGCCGAAGT
TCGGGCGCTAAGGATTCCCAAGGAGATGCCTTATGCCAAGCATGTCTACCATGTATTCGCGGTGCGCTCGCCGGACAGGG
AGGGGCTGAAACAGGCGCTTAACGCCAGCGGTGTTGAGTGCGGGGTGCATTATCCCGTTCCGATCCACCTTCAGCAGGCT
TATGCCGGCCGCGGCGAAGGCGAGGGAAGCTTTCCCGTGGCTGAACGCGTCGCGAAGGAGCTACTGTCTCTCCCAATGTT
CCCGGAGTTAACGACGGAGCAGGTCAGCTACATCTGTGACCAAATCAAGCGGTTCCACTAG

Upstream 100 bases:

>100_bases
GTCGGTGCCGGAAGCGTCGTCACCAAGGACGTTCAACCCTACAGCATCGTGGCTGGCAATCCCGCAAGACTGCTGCGTAC
CATCCCCAAGGAGACTGATG

Downstream 100 bases:

>100_bases
TTCATATGGCCAATCTCACAGTGAAGCTGATAGACCCCCTGAAGGATGCGGGGGTGAGCCACTGGCTGGAACGCTGCCGG
GAGACGACGATCTTTCACAG

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MKVPFLNLKAQYDSIAHEVEQSIREVLSTCAFSGGPYVQKFEEEFASFCGCKWAVGVGSGTDALWLALLGLGVQPGDEVI
TVPNSFIATAEAISLCGAQPVFIDVGEDSFTMNPALLEQAISPRTRAIIPVHLYGQAADMDAILAIADRHGIPVVEDACQ
AHGAEYKGRRAGSMGIAGCFSFYPGKNLGAYGEAGCVVTKDEDLAKKLRMLRDHGQSQKYYHQLVGINGRMDGIQGAVLS
AKLKYLDSWNAFRRTHASFYQEALAEVRALRIPKEMPYAKHVYHVFAVRSPDREGLKQALNASGVECGVHYPVPIHLQQA
YAGRGEGEGSFPVAERVAKELLSLPMFPELTTEQVSYICDQIKRFH

Sequences:

>Translated_366_residues
MKVPFLNLKAQYDSIAHEVEQSIREVLSTCAFSGGPYVQKFEEEFASFCGCKWAVGVGSGTDALWLALLGLGVQPGDEVI
TVPNSFIATAEAISLCGAQPVFIDVGEDSFTMNPALLEQAISPRTRAIIPVHLYGQAADMDAILAIADRHGIPVVEDACQ
AHGAEYKGRRAGSMGIAGCFSFYPGKNLGAYGEAGCVVTKDEDLAKKLRMLRDHGQSQKYYHQLVGINGRMDGIQGAVLS
AKLKYLDSWNAFRRTHASFYQEALAEVRALRIPKEMPYAKHVYHVFAVRSPDREGLKQALNASGVECGVHYPVPIHLQQA
YAGRGEGEGSFPVAERVAKELLSLPMFPELTTEQVSYICDQIKRFH
>Mature_366_residues
MKVPFLNLKAQYDSIAHEVEQSIREVLSTCAFSGGPYVQKFEEEFASFCGCKWAVGVGSGTDALWLALLGLGVQPGDEVI
TVPNSFIATAEAISLCGAQPVFIDVGEDSFTMNPALLEQAISPRTRAIIPVHLYGQAADMDAILAIADRHGIPVVEDACQ
AHGAEYKGRRAGSMGIAGCFSFYPGKNLGAYGEAGCVVTKDEDLAKKLRMLRDHGQSQKYYHQLVGINGRMDGIQGAVLS
AKLKYLDSWNAFRRTHASFYQEALAEVRALRIPKEMPYAKHVYHVFAVRSPDREGLKQALNASGVECGVHYPVPIHLQQA
YAGRGEGEGSFPVAERVAKELLSLPMFPELTTEQVSYICDQIKRFH

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=364, Percent_Identity=34.3406593406593, Blast_Score=198, Evalue=5e-52,
Organism=Escherichia coli, GI2367285, Length=308, Percent_Identity=35.0649350649351, Blast_Score=167, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 40001; Mature: 40001

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVPFLNLKAQYDSIAHEVEQSIREVLSTCAFSGGPYVQKFEEEFASFCGCKWAVGVGSG
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
TDALWLALLGLGVQPGDEVITVPNSFIATAEAISLCGAQPVFIDVGEDSFTMNPALLEQA
HHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHH
ISPRTRAIIPVHLYGQAADMDAILAIADRHGIPVVEDACQAHGAEYKGRRAGSMGIAGCF
CCCCCCEEEEEEECCCCCCHHHHHEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHH
SFYPGKNLGAYGEAGCVVTKDEDLAKKLRMLRDHGQSQKYYHQLVGINGRMDGIQGAVLS
HHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHH
AKLKYLDSWNAFRRTHASFYQEALAEVRALRIPKEMPYAKHVYHVFAVRSPDREGLKQAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEEECCCCHHHHHHHH
NASGVECGVHYPVPIHLQQAYAGRGEGEGSFPVAERVAKELLSLPMFPELTTEQVSYICD
CCCCCCCCCCCCCCEEEHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
QIKRFH
HHHHCC
>Mature Secondary Structure
MKVPFLNLKAQYDSIAHEVEQSIREVLSTCAFSGGPYVQKFEEEFASFCGCKWAVGVGSG
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
TDALWLALLGLGVQPGDEVITVPNSFIATAEAISLCGAQPVFIDVGEDSFTMNPALLEQA
HHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHH
ISPRTRAIIPVHLYGQAADMDAILAIADRHGIPVVEDACQAHGAEYKGRRAGSMGIAGCF
CCCCCCEEEEEEECCCCCCHHHHHEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHH
SFYPGKNLGAYGEAGCVVTKDEDLAKKLRMLRDHGQSQKYYHQLVGINGRMDGIQGAVLS
HHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHH
AKLKYLDSWNAFRRTHASFYQEALAEVRALRIPKEMPYAKHVYHVFAVRSPDREGLKQAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEEECCCCHHHHHHHH
NASGVECGVHYPVPIHLQQAYAGRGEGEGSFPVAERVAKELLSLPMFPELTTEQVSYICD
CCCCCCCCCCCCCCEEEHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
QIKRFH
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]