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The map label for this gene is rtcB [C]

Identifier: 197117379

GI number: 197117379

Start: 1145714

End: 1147174

Strand: Reverse

Name: rtcB [C]

Synonym: Gbem_0989

Alternate gene names: 197117379

Gene position: 1147174-1145714 (Counterclockwise)

Preceding gene: 197117380

Following gene: 197117378

Centisome position: 24.86

GC content: 60.99

Gene sequence:

>1461_bases
ATGAACGTACCGGCGGCGCTAAAGCGGATCACAGATCAGGTATGGGAACTACCGGTGAGCTACAAGGAAGGGATGCTGGT
ACCCGCCCGAATCTTCGCCTCGGAAAAATTGGTCCGGGAGATGGATGCGGGCGTTTTCGAGCAGGTCAGCAACGTCGCCA
CGCTCCCCGGCATCCAGAGATACGCCTACTGCATGCCCGACGGCCACTGGGGCTACGGCTTTCCCATAGGGGGAGTCGCC
GCCATGGATCCGGGAACCGGCGTCATTTCCCCTGGAGGGATAGGCTTCGACATAAACTGCGGCATGCGGCTGGTATTGAC
CAACCTGACCGCCGACCAGGTATTCCCCAAACTGCATCAACTGGTCGATCGCCTCTTCGCCAGGATACCCACCGGCGTCG
GATGTCATGGTTTCGTGAAGCTGAAGCAGGACGATTTTCGTTCCATAGTGCAGCAGGGTTCGCGCTGGTGCCTGAAAAAC
GGTTTCGCTACCCAGGAAGATCTGGATATGACCGAGGAAGGGGGCTGCTTCTCCGGCGCCGACGCATCGCACATAAGCGA
CAAGGCGGTTGAGCGCGGCTACAACCAGCTCGGCACCCTAGGGTCCGGCAACCACTACTGCGAGATCCAGGTGGTAAAGC
CCGAGAACATCATGGACGCGGAACTGGCCGCAGCGTTCGGGCTCACCACGGTACCCAACCAGGTGGTGATCATGTTCCAT
TGCGGCAGCAGGGGCTTTGGCCACCAGGTGGCAACGGACTACTTGAAATTGTTCCTCTCGGTCATGGGGCGCAAGTACGG
CATCAAGATCGTCGATCGCGAACTCGCCTGCGCCCCATTCCATTCGCCTGAAGGGCAAGCCTACTTCAGCGCCATGAAGT
GCGCCGTCAACATGGCCTTCGCCAACAGGCAAGTGATCCTGCATCGGATCAGGGAGGTCTTTTCCGACCTGTTCCACGCC
TCGCCCGACGAACTCGGGCTGCGCATGGTGTACGACGTGGCGCACAACACGGCAAAGCTGGAACGGCACGAGGTAAACGG
GACCCGGAAGGAACTCCTGGTACACCGCAAAGGATCGACCCGTGCCTTCGGCCCTGGCGCGGCAGGGTTACCCGGTTGCT
ACGCCAAGACCGGCCAGCCCGTCATCATAGGGGGTAGCATGGAGACCGGCTCCTACCTGCTCGCGGGGATGCAAAGCGGC
GCGGACGCCTTCTTCACCACCGCCCACGGCAGCGGCAGGACCATGAGCAGGCATGAGGCGAAGAAAAATTTCAGGGGCGA
CAAGCTGCAGCGTGAAATGGAGGCGCGGGGGATCTACGTTCGCACCGACTCGTTCGGAGGGTTGGCGGAGGAGGCGGGGC
CCGCCTACAAGAATATAGACGAGGTTGTGGAAGCCACCGAGCTGGCAGGTTTGAGCAAGAGGGTGGCGCGCCTGGTTCCC
ATCGGCAACATCAAGGGGTAG

Upstream 100 bases:

>100_bases
CCCGCCGCCCTGATCTAAGCATTGCTTTCGGACATCCCAGATTAAATTATGATAACATCTCCCGGTGCATGGCCATGAGA
ACCGTAGCAACGGAGGAGTT

Downstream 100 bases:

>100_bases
CCCCTGCAGCACCGGGGCCAGTAGGGGGAAAGATGCCGTATCAATACCGCGGTGACATAGCCCATGCCGACGTCGCTTTC
GATGCCTGGGCTAAGACCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MNVPAALKRITDQVWELPVSYKEGMLVPARIFASEKLVREMDAGVFEQVSNVATLPGIQRYAYCMPDGHWGYGFPIGGVA
AMDPGTGVISPGGIGFDINCGMRLVLTNLTADQVFPKLHQLVDRLFARIPTGVGCHGFVKLKQDDFRSIVQQGSRWCLKN
GFATQEDLDMTEEGGCFSGADASHISDKAVERGYNQLGTLGSGNHYCEIQVVKPENIMDAELAAAFGLTTVPNQVVIMFH
CGSRGFGHQVATDYLKLFLSVMGRKYGIKIVDRELACAPFHSPEGQAYFSAMKCAVNMAFANRQVILHRIREVFSDLFHA
SPDELGLRMVYDVAHNTAKLERHEVNGTRKELLVHRKGSTRAFGPGAAGLPGCYAKTGQPVIIGGSMETGSYLLAGMQSG
ADAFFTTAHGSGRTMSRHEAKKNFRGDKLQREMEARGIYVRTDSFGGLAEEAGPAYKNIDEVVEATELAGLSKRVARLVP
IGNIKG

Sequences:

>Translated_486_residues
MNVPAALKRITDQVWELPVSYKEGMLVPARIFASEKLVREMDAGVFEQVSNVATLPGIQRYAYCMPDGHWGYGFPIGGVA
AMDPGTGVISPGGIGFDINCGMRLVLTNLTADQVFPKLHQLVDRLFARIPTGVGCHGFVKLKQDDFRSIVQQGSRWCLKN
GFATQEDLDMTEEGGCFSGADASHISDKAVERGYNQLGTLGSGNHYCEIQVVKPENIMDAELAAAFGLTTVPNQVVIMFH
CGSRGFGHQVATDYLKLFLSVMGRKYGIKIVDRELACAPFHSPEGQAYFSAMKCAVNMAFANRQVILHRIREVFSDLFHA
SPDELGLRMVYDVAHNTAKLERHEVNGTRKELLVHRKGSTRAFGPGAAGLPGCYAKTGQPVIIGGSMETGSYLLAGMQSG
ADAFFTTAHGSGRTMSRHEAKKNFRGDKLQREMEARGIYVRTDSFGGLAEEAGPAYKNIDEVVEATELAGLSKRVARLVP
IGNIKG
>Mature_486_residues
MNVPAALKRITDQVWELPVSYKEGMLVPARIFASEKLVREMDAGVFEQVSNVATLPGIQRYAYCMPDGHWGYGFPIGGVA
AMDPGTGVISPGGIGFDINCGMRLVLTNLTADQVFPKLHQLVDRLFARIPTGVGCHGFVKLKQDDFRSIVQQGSRWCLKN
GFATQEDLDMTEEGGCFSGADASHISDKAVERGYNQLGTLGSGNHYCEIQVVKPENIMDAELAAAFGLTTVPNQVVIMFH
CGSRGFGHQVATDYLKLFLSVMGRKYGIKIVDRELACAPFHSPEGQAYFSAMKCAVNMAFANRQVILHRIREVFSDLFHA
SPDELGLRMVYDVAHNTAKLERHEVNGTRKELLVHRKGSTRAFGPGAAGLPGCYAKTGQPVIIGGSMETGSYLLAGMQSG
ADAFFTTAHGSGRTMSRHEAKKNFRGDKLQREMEARGIYVRTDSFGGLAEEAGPAYKNIDEVVEATELAGLSKRVARLVP
IGNIKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=498, Percent_Identity=41.7670682730924, Blast_Score=366, Evalue=1e-101,
Organism=Escherichia coli, GI2367224, Length=433, Percent_Identity=28.175519630485, Blast_Score=119, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI17506665, Length=498, Percent_Identity=42.3694779116466, Blast_Score=377, Evalue=1e-105,
Organism=Drosophila melanogaster, GI24585217, Length=498, Percent_Identity=41.7670682730924, Blast_Score=365, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 52862; Mature: 52862

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS01288 UPF0027

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVPAALKRITDQVWELPVSYKEGMLVPARIFASEKLVREMDAGVFEQVSNVATLPGIQR
CCCHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
YAYCMPDGHWGYGFPIGGVAAMDPGTGVISPGGIGFDINCGMRLVLTNLTADQVFPKLHQ
EEEECCCCCCCCCCCCCCEEEECCCCCEECCCCCCEECCCCEEEEEECCCHHHHHHHHHH
LVDRLFARIPTGVGCHGFVKLKQDDFRSIVQQGSRWCLKNGFATQEDLDMTEEGGCFSGA
HHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHCCCEEHHCCCCCCCCCCCCCCCCCCCCC
DASHISDKAVERGYNQLGTLGSGNHYCEIQVVKPENIMDAELAAAFGLTTVPNQVVIMFH
CCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEE
CGSRGFGHQVATDYLKLFLSVMGRKYGIKIVDRELACAPFHSPEGQAYFSAMKCAVNMAF
CCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCHHHHHHHHHHHHHHH
ANRQVILHRIREVFSDLFHASPDELGLRMVYDVAHNTAKLERHEVNGTRKELLVHRKGST
HHHHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHCHHHHHHHHCCCCHHHHEEECCCCC
RAFGPGAAGLPGCYAKTGQPVIIGGSMETGSYLLAGMQSGADAFFTTAHGSGRTMSRHEA
CCCCCCCCCCCCCHHCCCCEEEEECCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHH
KKNFRGDKLQREMEARGIYVRTDSFGGLAEEAGPAYKNIDEVVEATELAGLSKRVARLVP
HHCCCCHHHHHHHHHCCEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
IGNIKG
CCCCCC
>Mature Secondary Structure
MNVPAALKRITDQVWELPVSYKEGMLVPARIFASEKLVREMDAGVFEQVSNVATLPGIQR
CCCHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
YAYCMPDGHWGYGFPIGGVAAMDPGTGVISPGGIGFDINCGMRLVLTNLTADQVFPKLHQ
EEEECCCCCCCCCCCCCCEEEECCCCCEECCCCCCEECCCCEEEEEECCCHHHHHHHHHH
LVDRLFARIPTGVGCHGFVKLKQDDFRSIVQQGSRWCLKNGFATQEDLDMTEEGGCFSGA
HHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHCCCEEHHCCCCCCCCCCCCCCCCCCCCC
DASHISDKAVERGYNQLGTLGSGNHYCEIQVVKPENIMDAELAAAFGLTTVPNQVVIMFH
CCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEE
CGSRGFGHQVATDYLKLFLSVMGRKYGIKIVDRELACAPFHSPEGQAYFSAMKCAVNMAF
CCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCHHHHHHHHHHHHHHH
ANRQVILHRIREVFSDLFHASPDELGLRMVYDVAHNTAKLERHEVNGTRKELLVHRKGST
HHHHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHCHHHHHHHHCCCCHHHHEEECCCCC
RAFGPGAAGLPGCYAKTGQPVIIGGSMETGSYLLAGMQSGADAFFTTAHGSGRTMSRHEA
CCCCCCCCCCCCCHHCCCCEEEEECCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHH
KKNFRGDKLQREMEARGIYVRTDSFGGLAEEAGPAYKNIDEVVEATELAGLSKRVARLVP
HHCCCCHHHHHHHHHCCEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
IGNIKG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]