| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is ppc [H]
Identifier: 197116626
GI number: 197116626
Start: 265765
End: 268500
Strand: Direct
Name: ppc [H]
Synonym: Gbem_0226
Alternate gene names: 197116626
Gene position: 265765-268500 (Clockwise)
Preceding gene: 197116623
Following gene: 308535152
Centisome position: 5.76
GC content: 65.42
Gene sequence:
>2736_bases ATGCAGGACACCAAAGAGACACCGGATAAGTTGCAGCGAGACCTCGATTACCTGATGGACTGCCTCGCCGAGATGTTTTC GGGGCTTCAGGAGAAGGAACTGTCCGCCTGCCTGCCGCGAGCGGATTCCCTCGCGCCCGGCGCCGACTGCCGTTTCGTCA GGGCGTGGTCCATAGCTTTCCAGCTCCTCAGCATGGCGGAGGAGAACTTCGCCGTGCAAAGCCGCCGGGCTCTGGAAGCC GAACAAGGACTCGTGGCGGAGCCGGGGCTTTGGGGGCGGGTCCTGGAGCAGATCAAGGAGAGCGGGGTGACCGCAGAGGA GCTTGCCGCAAAGCTCGGCCAGATCCGCGTTGAGCCGGTGCTGACGGCGCACCCGACCGAGGCGAAGCGCGCCTCGGTTC TGCGGCACCTGCGTGAACTGTACCTGCTGCTGGTTAAGCGCGAGAATACCGTTTGGACTCCAGCGGAAAAGGACGACATC CGCGACGATATCGTCGCGATGCTGGAGCGCTTGTGGCGCACCGGCGAGATCCACCTGGAGAAGCCGCACGTACTGAACGA GCTCGCCAGCATGATCTACCACCTGCGCGAGATCTTTCCCAAGGCGATCCCGATCCTCGACCAGAGGATCTGCCGCGCCT GGTCCGAGGCCGGTTTAGCTGGCGCCATCTCCCCCCTCACCACCGCGCTGCCCCGGATAAGCTTCAGCACCTGGGTAGGG GGCGACCGCGACGGGCACCCGCTGGTGACGCCGGAGGTGACGGAGGCGACGCTTAAGGAACTGAGGCTCAACGCGCTCAT GCTGATCCACGGCCAGCTCACCACCCTGGGGAGCAGGCTCAGCCTCTCTCGCCGGCTGATCCACCCCTCTGCAGGTCTGC AAAGACGGTTGGACCAACTCGCGGCACACTCCGGTCCAGCGGGGAGCGAAGCCCTCAGGCGCAACCCCGAAGAACCCTGG CGCCAGATGGTGAACCTGATCAAGGCAAGGCTCCCGGTCGACGTCACGGGGGAGGAGGAGATCCTATGCGGCGATCTGGG GACACGCTACTGCCACAGCGACGAACTCGCCCACGACCTGCGGCTTTTGAGGGACAGCCTGGTAGCCGCCGGGGCCTCCC GTCTCGCCTTGGCCGACGTGGTCCCGGTGCTGCGCACCGTCGAGGTCTTCGGCTTCCACCTGGCAAGCCTGGATATCCGT CAAAACAGCAGCTACCACGACAAGGCCGTGGACCAGCTGCTGGCCGCAGCCGGCATCTCCGATCACCGCTTTTCGCAATG GAGCGAGGAAAAGCGCCTCGCCTTCCTCGACCAGGAGCTTGCCTCCCCCCGCCCCTTTGTCCGCGCCGACGCGAAGCCGG GCCCCGAGGCGGAGGGGGTGCTAGGATGTTTCCGCGTCCTCGCCGCCCACATAGCCCTCTACGGCACCGATGCCATCGGT CCCCTGATCGTCAGCATGACCCGCAGCGTTTCGGATCTCTTGGTCGTTTACCTCCTGGCCAGGGAGGCCGGTCTCACCGC CGCAGGGGAGGGAGGGGCGGTCTGCCTGCTCCCGGTGGTGCCGCTTTTCGAGACCATCGACGATTTGCGTGGCAGTTCCG CCATATTGGAGGCCTTCCTGGTCCATCCCGCCACCCGCCGCACTCTGGCGCATCTGCATGGCGACCAACCGGTACAGCAG GTGATGGTCGGCTACAGCGACAGCAACAAGGACGGCGGGATTCTGGCGAGCCTGTGGAGCCTGTACCGGGGTCAGGAGGC GATGCTGGAAACTGCTCGGCGCTTAGGCGTGCGGCTGCGGTTTTTTCATGGTCGCGGCGGCACCATCAGCCGCGGGGCCG GTCCCACCAGCCGTTTTCTGCGGGGACTTCCGGAAGGTTCCACCGGGGGCGACCTCCGGCTCACCGAGCAGGGGGAGGTG ATTTCCCAGAAGTACTCCAACCCCCTCAACGCGGCCTACAACCTGGAGCTGCTCCTGGCTGGGACGGCAGTGGTGACCCT GCCGCCGCGCCAGCCCGCCATCCCCAAAGAAAGGCTGGAATCGCTCATGGACCGGCTGGCGCAACGAAGCCGCTTCGCCT ACGAGCAGTTGCTGGCAGAGCCCGGATTTATCAAGTTTTTTCGGCAGGCGACCCCCATCGACGTCATCGAATGCAGCAGC ATCGGATCCCGTCCCGCCCGCCGCAGCAGGTCCGCCACCCTTTCCGACCTGCGCGCCATCCCCTGGGTCTTCAGTTGGAG CCAGGCCCGCTATTTCCTTTCGGGGTGGTACGGCGTGGGGTCTGCGCTGGAAGAGCTGCTGAACGAGGACGAGAGATCCT TTCGCGAGCTGGCCGGCCACAGCCAGTCCTGGACGGCGCTGCACTACATCATCAGCAATACCGCTACCAGTATCGCCACT GCCGACCTGCAGATCATGCAGGCATACGCCGGTCTGGTGCTGGATCAAACGGTGAGGGACCCGATCTTCGCGCTCCTGAA AGGCGAATACCTGCGCACCACGAGAATTCTGGAGGAGATCTACGGCGGAGCGCTCGCCGAGCGCCGGGCCTCGGTGTACA CCTCCCTGGCGCGGCGCGAGGGAGCCCTGAAGGTGTTGCACGACCGCCAGATCGACCTGCTGCGCCAGTGGCGGCGCCCC GAGACGCAGCAAAACCGGGCACAATGCGAGGAACTCCTGTTCTGGCTCCTGGAGACGGTAAACGCCATCGCCGCAGGCCT GGGCACCACCGGCTGA
Upstream 100 bases:
>100_bases TTCGGGGCGCCCGGACGATGTGCAGTTCGGGAATCTACGGTATGATTCCTAACTGTTCGCCCGAGGCGGGGGGCTTGGCC GCGGGCAAGGAGGCTTCATC
Downstream 100 bases:
>100_bases TAGTCTGAGTCTAAGAAGGTTTACGGCGCGCGAAGGAAGGCGCCGGTCTGCTGCTGGCGGGGTGGAGGGGAGTTGAGTGC AGAAAGGCGGCGGAAGGGTT
Product: phosphoenolpyruvate carboxylase
Products: NA
Alternate protein names: PEPC; PEPCase [H]
Number of amino acids: Translated: 911; Mature: 911
Protein sequence:
>911_residues MQDTKETPDKLQRDLDYLMDCLAEMFSGLQEKELSACLPRADSLAPGADCRFVRAWSIAFQLLSMAEENFAVQSRRALEA EQGLVAEPGLWGRVLEQIKESGVTAEELAAKLGQIRVEPVLTAHPTEAKRASVLRHLRELYLLLVKRENTVWTPAEKDDI RDDIVAMLERLWRTGEIHLEKPHVLNELASMIYHLREIFPKAIPILDQRICRAWSEAGLAGAISPLTTALPRISFSTWVG GDRDGHPLVTPEVTEATLKELRLNALMLIHGQLTTLGSRLSLSRRLIHPSAGLQRRLDQLAAHSGPAGSEALRRNPEEPW RQMVNLIKARLPVDVTGEEEILCGDLGTRYCHSDELAHDLRLLRDSLVAAGASRLALADVVPVLRTVEVFGFHLASLDIR QNSSYHDKAVDQLLAAAGISDHRFSQWSEEKRLAFLDQELASPRPFVRADAKPGPEAEGVLGCFRVLAAHIALYGTDAIG PLIVSMTRSVSDLLVVYLLAREAGLTAAGEGGAVCLLPVVPLFETIDDLRGSSAILEAFLVHPATRRTLAHLHGDQPVQQ VMVGYSDSNKDGGILASLWSLYRGQEAMLETARRLGVRLRFFHGRGGTISRGAGPTSRFLRGLPEGSTGGDLRLTEQGEV ISQKYSNPLNAAYNLELLLAGTAVVTLPPRQPAIPKERLESLMDRLAQRSRFAYEQLLAEPGFIKFFRQATPIDVIECSS IGSRPARRSRSATLSDLRAIPWVFSWSQARYFLSGWYGVGSALEELLNEDERSFRELAGHSQSWTALHYIISNTATSIAT ADLQIMQAYAGLVLDQTVRDPIFALLKGEYLRTTRILEEIYGGALAERRASVYTSLARREGALKVLHDRQIDLLRQWRRP ETQQNRAQCEELLFWLLETVNAIAAGLGTTG
Sequences:
>Translated_911_residues MQDTKETPDKLQRDLDYLMDCLAEMFSGLQEKELSACLPRADSLAPGADCRFVRAWSIAFQLLSMAEENFAVQSRRALEA EQGLVAEPGLWGRVLEQIKESGVTAEELAAKLGQIRVEPVLTAHPTEAKRASVLRHLRELYLLLVKRENTVWTPAEKDDI RDDIVAMLERLWRTGEIHLEKPHVLNELASMIYHLREIFPKAIPILDQRICRAWSEAGLAGAISPLTTALPRISFSTWVG GDRDGHPLVTPEVTEATLKELRLNALMLIHGQLTTLGSRLSLSRRLIHPSAGLQRRLDQLAAHSGPAGSEALRRNPEEPW RQMVNLIKARLPVDVTGEEEILCGDLGTRYCHSDELAHDLRLLRDSLVAAGASRLALADVVPVLRTVEVFGFHLASLDIR QNSSYHDKAVDQLLAAAGISDHRFSQWSEEKRLAFLDQELASPRPFVRADAKPGPEAEGVLGCFRVLAAHIALYGTDAIG PLIVSMTRSVSDLLVVYLLAREAGLTAAGEGGAVCLLPVVPLFETIDDLRGSSAILEAFLVHPATRRTLAHLHGDQPVQQ VMVGYSDSNKDGGILASLWSLYRGQEAMLETARRLGVRLRFFHGRGGTISRGAGPTSRFLRGLPEGSTGGDLRLTEQGEV ISQKYSNPLNAAYNLELLLAGTAVVTLPPRQPAIPKERLESLMDRLAQRSRFAYEQLLAEPGFIKFFRQATPIDVIECSS IGSRPARRSRSATLSDLRAIPWVFSWSQARYFLSGWYGVGSALEELLNEDERSFRELAGHSQSWTALHYIISNTATSIAT ADLQIMQAYAGLVLDQTVRDPIFALLKGEYLRTTRILEEIYGGALAERRASVYTSLARREGALKVLHDRQIDLLRQWRRP ETQQNRAQCEELLFWLLETVNAIAAGLGTTG >Mature_911_residues MQDTKETPDKLQRDLDYLMDCLAEMFSGLQEKELSACLPRADSLAPGADCRFVRAWSIAFQLLSMAEENFAVQSRRALEA EQGLVAEPGLWGRVLEQIKESGVTAEELAAKLGQIRVEPVLTAHPTEAKRASVLRHLRELYLLLVKRENTVWTPAEKDDI RDDIVAMLERLWRTGEIHLEKPHVLNELASMIYHLREIFPKAIPILDQRICRAWSEAGLAGAISPLTTALPRISFSTWVG GDRDGHPLVTPEVTEATLKELRLNALMLIHGQLTTLGSRLSLSRRLIHPSAGLQRRLDQLAAHSGPAGSEALRRNPEEPW RQMVNLIKARLPVDVTGEEEILCGDLGTRYCHSDELAHDLRLLRDSLVAAGASRLALADVVPVLRTVEVFGFHLASLDIR QNSSYHDKAVDQLLAAAGISDHRFSQWSEEKRLAFLDQELASPRPFVRADAKPGPEAEGVLGCFRVLAAHIALYGTDAIG PLIVSMTRSVSDLLVVYLLAREAGLTAAGEGGAVCLLPVVPLFETIDDLRGSSAILEAFLVHPATRRTLAHLHGDQPVQQ VMVGYSDSNKDGGILASLWSLYRGQEAMLETARRLGVRLRFFHGRGGTISRGAGPTSRFLRGLPEGSTGGDLRLTEQGEV ISQKYSNPLNAAYNLELLLAGTAVVTLPPRQPAIPKERLESLMDRLAQRSRFAYEQLLAEPGFIKFFRQATPIDVIECSS IGSRPARRSRSATLSDLRAIPWVFSWSQARYFLSGWYGVGSALEELLNEDERSFRELAGHSQSWTALHYIISNTATSIAT ADLQIMQAYAGLVLDQTVRDPIFALLKGEYLRTTRILEEIYGGALAERRASVYTSLARREGALKVLHDRQIDLLRQWRRP ETQQNRAQCEELLFWLLETVNAIAAGLGTTG
Specific function: Through the carboxylation of phosphoenolpyruvate (PEP) it forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle [H]
COG id: COG2352
COG function: function code C; Phosphoenolpyruvate carboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEPCase type 1 family [H]
Homologues:
Organism=Escherichia coli, GI1790393, Length=883, Percent_Identity=30.237825594564, Blast_Score=298, Evalue=8e-82,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021135 - InterPro: IPR018129 - InterPro: IPR022805 - InterPro: IPR015813 [H]
Pfam domain/function: PF00311 PEPcase [H]
EC number: =4.1.1.31 [H]
Molecular weight: Translated: 100924; Mature: 100924
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: PS00781 PEPCASE_1 ; PS00393 PEPCASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDTKETPDKLQRDLDYLMDCLAEMFSGLQEKELSACLPRADSLAPGADCRFVRAWSIAF CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH QLLSMAEENFAVQSRRALEAEQGLVAEPGLWGRVLEQIKESGVTAEELAAKLGQIRVEPV HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCEEECEE LTAHPTEAKRASVLRHLRELYLLLVKRENTVWTPAEKDDIRDDIVAMLERLWRTGEIHLE EECCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCEEEC KPHVLNELASMIYHLREIFPKAIPILDQRICRAWSEAGLAGAISPLTTALPRISFSTWVG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHCCC GDRDGHPLVTPEVTEATLKELRLNALMLIHGQLTTLGSRLSLSRRLIHPSAGLQRRLDQL CCCCCCCCCCCCHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHH AAHSGPAGSEALRRNPEEPWRQMVNLIKARLPVDVTGEEEILCGDLGTRYCHSDELAHDL HHCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHCCHHHHHHHH RLLRDSLVAAGASRLALADVVPVLRTVEVFGFHLASLDIRQNSSYHDKAVDQLLAAAGIS HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHCCCC DHRFSQWSEEKRLAFLDQELASPRPFVRADAKPGPEAEGVLGCFRVLAAHIALYGTDAIG HHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH PLIVSMTRSVSDLLVVYLLAREAGLTAAGEGGAVCLLPVVPLFETIDDLRGSSAILEAFL HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHH VHPATRRTLAHLHGDQPVQQVMVGYSDSNKDGGILASLWSLYRGQEAMLETARRLGVRLR HCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCEEE FFHGRGGTISRGAGPTSRFLRGLPEGSTGGDLRLTEQGEVISQKYSNPLNAAYNLELLLA EEECCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCHHHHHHCCCCCCCCCCEEEEEE GTAVVTLPPRQPAIPKERLESLMDRLAQRSRFAYEQLLAEPGFIKFFRQATPIDVIECSS CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEECCC IGSRPARRSRSATLSDLRAIPWVFSWSQARYFLSGWYGVGSALEELLNEDERSFRELAGH CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SQSWTALHYIISNTATSIATADLQIMQAYAGLVLDQTVRDPIFALLKGEYLRTTRILEEI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH YGGALAERRASVYTSLARREGALKVLHDRQIDLLRQWRRPETQQNRAQCEELLFWLLETV HCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH NAIAAGLGTTG HHHHHHCCCCC >Mature Secondary Structure MQDTKETPDKLQRDLDYLMDCLAEMFSGLQEKELSACLPRADSLAPGADCRFVRAWSIAF CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH QLLSMAEENFAVQSRRALEAEQGLVAEPGLWGRVLEQIKESGVTAEELAAKLGQIRVEPV HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCEEECEE LTAHPTEAKRASVLRHLRELYLLLVKRENTVWTPAEKDDIRDDIVAMLERLWRTGEIHLE EECCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCEEEC KPHVLNELASMIYHLREIFPKAIPILDQRICRAWSEAGLAGAISPLTTALPRISFSTWVG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHCCC GDRDGHPLVTPEVTEATLKELRLNALMLIHGQLTTLGSRLSLSRRLIHPSAGLQRRLDQL CCCCCCCCCCCCHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHH AAHSGPAGSEALRRNPEEPWRQMVNLIKARLPVDVTGEEEILCGDLGTRYCHSDELAHDL HHCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHCCHHHHHHHH RLLRDSLVAAGASRLALADVVPVLRTVEVFGFHLASLDIRQNSSYHDKAVDQLLAAAGIS HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHCCCC DHRFSQWSEEKRLAFLDQELASPRPFVRADAKPGPEAEGVLGCFRVLAAHIALYGTDAIG HHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH PLIVSMTRSVSDLLVVYLLAREAGLTAAGEGGAVCLLPVVPLFETIDDLRGSSAILEAFL HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHH VHPATRRTLAHLHGDQPVQQVMVGYSDSNKDGGILASLWSLYRGQEAMLETARRLGVRLR HCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCEEE FFHGRGGTISRGAGPTSRFLRGLPEGSTGGDLRLTEQGEVISQKYSNPLNAAYNLELLLA EEECCCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCHHHHHHCCCCCCCCCCEEEEEE GTAVVTLPPRQPAIPKERLESLMDRLAQRSRFAYEQLLAEPGFIKFFRQATPIDVIECSS CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEECCC IGSRPARRSRSATLSDLRAIPWVFSWSQARYFLSGWYGVGSALEELLNEDERSFRELAGH CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SQSWTALHYIISNTATSIATADLQIMQAYAGLVLDQTVRDPIFALLKGEYLRTTRILEEI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH YGGALAERRASVYTSLARREGALKVLHDRQIDLLRQWRRPETQQNRAQCEELLFWLLETV HCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH NAIAAGLGTTG HHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9168622; 7961516 [H]